Array 1 569116-570242 **** Predicted by CRISPRDetect 2.4 *** >NZ_NQDE01000012.1 Shigella sonnei strain ECFood+09 NODE_1_length_726568_cov_74.5223_ID_1.ctg_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 569116 29 100.0 32 ............................. AGATCACACTTACCCTGCAAAATCTTAATGGG 569177 29 100.0 32 ............................. ACAATCACATATACGACGCGAGACGGAGATCG 569238 29 100.0 32 ............................. CTACCGGGACCGTTGGTTTCCACCATGACCAG 569299 29 100.0 32 ............................. GCCAATGATCCCTACTCGTACCCCCAAACGGG 569360 29 100.0 32 ............................. CTGACGGAAAGCCAATTCAACGTAATCTCAGG 569421 29 100.0 32 ............................. AATGGCGTTTATTTCTCCCATGTAGTGAGCTG 569482 29 100.0 32 ............................. ATAACAACGACACTCCGGCATATATAAAGGCA 569543 29 100.0 32 ............................. GAGACGGAAATCGCGGTTGATAACGCTGATAT 569604 29 100.0 32 ............................. CCAAAATCCCCTAGGAATCCCAGCACGGTGCG 569665 29 96.6 32 ............................T GGATCTGTGGGATTATCAACGAGGTCAAATAA 569726 29 100.0 32 ............................. TCTTCAACGGTTTTGATTTCAAGTTTTTTGAG 569787 29 100.0 32 ............................. CGTGCCGCTCTTGAGATCGGCGGAAAGTTTAT 569848 29 100.0 32 ............................. CCAGTGGAGCCGCCGCGAATTTACACACGATT 569909 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 569970 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 570031 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 570092 29 93.1 32 .A.C......................... GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 570153 29 96.6 32 .A........................... GACGCCGCCGCTGCGAAGCCGTTTCCGATGTT 570214 29 89.7 0 .A.C........................A | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTATGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTTGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 595941-597373 **** Predicted by CRISPRDetect 2.4 *** >NZ_NQDE01000012.1 Shigella sonnei strain ECFood+09 NODE_1_length_726568_cov_74.5223_ID_1.ctg_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 595941 29 100.0 32 ............................. CAACTGGCGGAATACAGGACGGGTGGATATTC 596002 29 100.0 32 ............................. TTAGATCACACCTGGATACGAGAACAAATTGA 596063 29 100.0 32 ............................. CCCGTTGAAGATCTGGACGCGTGGGGAAAAGC 596124 29 100.0 32 ............................. TGCGCGGAACGGAGATTGTAAATATCAAAATC 596185 29 100.0 32 ............................. CCGTCAGTAAACCCGCTGGCGGGTACTGGATA 596246 29 100.0 32 ............................. TTTTCCCCGGCGCTAAACGGGGTAAAAAAATT 596307 29 100.0 32 ............................. CGTGGAGGAGAGGGCGACGCGCTGGCAGACAC 596368 29 100.0 32 ............................. CGTGTCTGCCGCTGCTGAGCTGTGCGGGGATA 596429 29 100.0 32 ............................. GCGCTCTCCTGAACCTCTTTCAGTCCGTCGAT 596490 29 100.0 32 ............................. CACCACATGAACCGCGACGCAGCGATTCACCG 596551 29 100.0 32 ............................. TTGCTAACTGGCGCGAAGAGCGCGCGTGGGCT 596612 29 100.0 32 ............................. ACAGTGAAATATATTGGGATAACATAAAGTCG 596673 29 100.0 32 ............................. GCGCACATATGAAAAAAGCCACGGGTTACGCG 596734 29 100.0 33 ............................. AAACGCGGGATTACGCGCCTGTTTGAAATCTGC 596796 29 100.0 32 ............................. TGATTGTGGAACATCCGTTTGACCTGCTGGCC 596857 29 100.0 32 ............................. GTCTATATTATGATGAAGAGGCAACCATTGAA 596918 29 96.6 32 ............T................ CAATTCATAAATTAATTTACTATTTTGAGTGC 596979 29 100.0 32 ............................. ACGGCGAATATAGCTGTCAACGCGCTCGACAT 597040 29 100.0 32 ............................. TGAGATCAAACGTTAGCCCGGCGGTAATTTGC 597101 29 100.0 32 ............................. GCAATGCTCGTACGCCGTCTCACTCCGCGTGA 597162 29 100.0 32 ............................. TTTATGTGGAGTATCAGTGTCTGGGTGGTAAG 597223 29 100.0 32 ............................. ACCTCGATAATGACACGGGCGCGAAAACAATC 597284 29 100.0 32 ............................. TCGGTGGCTGGATTGAAAAAGAAGATAATCTG 597345 29 96.6 0 ............T................ | ========== ====== ====== ====== ============================= ================================= ================== 24 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAAC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //