Array 1 485379-486687 **** Predicted by CRISPRDetect 2.4 *** >NZ_MTKU01000003.1 Salmonella enterica subsp. enterica serovar Tennessee strain MN25 scaffold00003, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 485379 29 100.0 32 ............................. CGCTACGAACTCTGGCAGAAGAGAGCGTTTAT 485440 29 100.0 32 ............................. AACGCTACCACCCGGCAGTAAAAGAGCCGACG 485501 29 100.0 32 ............................. CAGAACAGGAGCACGTTAGCCGCGTTGCTGAA 485562 29 100.0 32 ............................. GCATTCTTTCAAACGTTACTTCTGCTCGCGCC 485623 29 100.0 32 ............................. TTGTTGCAGGCGGGAGAACGCAGCGCGTACCC 485684 29 100.0 32 ............................. CCTGCCGTCGCCGTCGCCATATCCGGCGCTGT 485745 29 100.0 32 ............................. GGCCACTTATCAGCAAACCGGGCATCCAGAAC 485806 29 100.0 32 ............................. CGAGTCAACAGCGGTAGCCATTGCAGGCATTT 485867 29 100.0 32 ............................. GTTTGCCGTATCTTCGATCATACCGGAACGGT 485928 29 100.0 32 ............................. CTACCAGGCCCGTTTGTCTCAACCATGACCAG 485989 29 100.0 32 ............................. CCACGACTAACCGGTACTAATCCTGAGTTCAT 486050 29 100.0 32 ............................. TATGAGTTTTCAACATCACCAACTAGTCATGT 486111 29 100.0 32 ............................. GCCAAACAGGTTGAGATAGGGCTTCATTATGA 486172 29 100.0 32 ............................. ATGGAACAGGCCCAGGCTGCGCAGCAGCAACA 486233 29 100.0 32 ............................. TCAATAAAATCAATGATAAGCAGTGTCGTTAA 486294 29 100.0 32 ............................. AGAATCGCCAGCGGAAAGAGAAGGGGTTAGCG 486355 29 100.0 32 ............................. CGGGAGCACGGGTGTTGCAGCATTGCAGGAAG 486416 29 100.0 32 ............................. TGCGGCGCGGTAGTTGGCCTACATGATAGCCA 486477 29 100.0 32 ............................. GATGATCGTTTTTTTCGTTACGTCGCGCAAAT 486538 29 100.0 32 ............................. CACCTCAGATGTTTGGGGTGCAATTTGTAATG 486599 29 100.0 32 ............................. AGCGGCTAAACCTGCCGGTTATCGCTGAGCAG 486660 28 89.7 0 ............T..........-.G... | ========== ====== ====== ====== ============================= ================================ ================== 22 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCACCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAACCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGGGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 504062-505983 **** Predicted by CRISPRDetect 2.4 *** >NZ_MTKU01000003.1 Salmonella enterica subsp. enterica serovar Tennessee strain MN25 scaffold00003, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 504062 29 100.0 32 ............................. CAGTTTGAAGAGCGCGCCCGACAGGAATATGA 504123 29 100.0 32 ............................. TTACAGACCGCTCATTTGTTATAAATATGTTG 504184 29 100.0 32 ............................. CCTGGAATGGTTTAACGGTGCAATCCAGGATA 504245 29 100.0 32 ............................. CTGGCTAATCTGCGTGTTGATGTTGTCCATGC 504306 29 100.0 32 ............................. GTCCCTACAACCGGGACCGCCCGCCCGACCAG 504367 29 100.0 32 ............................. CCGAACGCTCAACGGGGAGTGATCGAGAATCT 504428 29 100.0 32 ............................. CGATCAGGAAATCAAGGAGAAGCGGGTGCGTA 504489 29 100.0 32 ............................. ATGGAGCGCGGTGGTTACATCGGCGTTCCGGA 504550 29 100.0 32 ............................. GTCGGGATCTCGACCTTTTCAATTTCTTCTAT 504611 29 100.0 32 ............................. TTTGCGACATTTATATTAATGATTATAAATAT 504672 29 100.0 32 ............................. ACTTGCTTCATTGACATGCCTGCCACTGCTCC 504733 29 100.0 32 ............................. GCGCGCCATTGCTGAGGGTAAACCGGCGATTA 504794 29 100.0 32 ............................. CCAGCTCAATTTCGCCAACCTTCGCGCTAATG 504855 29 100.0 32 ............................. TCCGTCTCCGCCAACGCCTTTAGCCCATCCAG 504916 29 100.0 32 ............................. CTCTTTGATCTCTCCGTTTGCCGTTGAGTGGT 504977 29 100.0 32 ............................. TTGACCGGACTCGCGGTTATTCAACTAACCGT 505038 29 100.0 32 ............................. TAGAATAATTGTGTTTTTGCTACCAATGGTTG 505099 29 100.0 32 ............................. AATCTTCAGAGGACTCAGATCCTGATTACGTT 505160 29 100.0 32 ............................. CAGGCATAACTACACCTGTCAGGAGCCAATTA 505221 29 100.0 32 ............................. TGGTTACGTATACGCCAGATTCAGAAAAGGCC 505282 29 100.0 32 ............................. ATTCAAAAATTCAATATGAGGTTGGAAATTTT 505343 29 100.0 32 ............................. GTTGTGTGGGTACAGCCGGCCAGCGTCAGCAG 505404 29 100.0 32 ............................. TACGAATAAACAGATTTTTGCGATATCTCTGC 505465 29 100.0 32 ............................. CAAATGAAAAATGGTTTAAAGGAGGTCTGTAA 505526 29 100.0 32 ............................. TTTACCTGGTTCGTCTGGTTCAACTATATCGA 505587 29 100.0 32 ............................. ATCGAATGCTTTTGTGTGTTCTGCTGCCACTT 505648 29 100.0 32 ............................. GGGGCGTCACCATTTTTGAATTTATCAGCCGC 505709 29 100.0 32 ............................. ACCAGGCTACCCGCGCGGTAGTTCGTCGACAG 505770 29 100.0 32 ............................. AGCAATGATTGAAAAGCTGGCGATAAACAAGG 505831 29 100.0 33 ............................. ATAAATCTAATTTATTTGATTAGTAGTGCTAAA 505893 29 100.0 32 ............................. TCGCACAACGCCTGGATATCCGCCCATCGGCC 505954 29 96.6 0 ............T................ | A [505981] ========== ====== ====== ====== ============================= ================================= ================== 32 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCAAAAACATTGAGTGCTTCTTGTACGTTCAT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //