Array 1 166911-167518 **** Predicted by CRISPRDetect 2.4 *** >NZ_WITG01000003.1 Staphylococcus epidermidis strain F530B NODE_3_length_226010_cov_47.7813_ID_1645, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 166911 37 97.3 36 ....................................G GGGAGGGCGCTCAATTTGAAATTAGCTTGGAATACG 166984 37 100.0 34 ..................................... GATATCCCTCAACAATTGTTTTTTCGTTTCAATT 167055 37 100.0 33 ..................................... ATATAGGAAGTATAATATTGACTACGTTCCTTC 167125 37 100.0 34 ..................................... TTAGCAATTATTTCATTATTAGTAGTCGCTTTAG 167196 37 100.0 33 ..................................... TTTATAATACGAAATATGTTTTTCTATCTCGGT 167266 37 100.0 35 ..................................... CCAGTTTCTTGTATTTCTTTGCTAAATAAACCACC 167338 37 97.3 34 ....................................G ATAAATATCTATAATTAACAATTTTCTTATTGAA 167409 37 100.0 36 ..................................... CCAACTTACTATTTCCTTCTTGAAAAGTAAACTTCA 167482 37 86.5 0 AT..........C....G..................C | ========== ====== ====== ====== ===================================== ==================================== ================== 9 37 97.9 34 GATCGATAACTATCCCGAAGAACAGGGGATGAGAACT # Left flank : TTTTTTAGTAAAACCACTAATAAGGGGACAGAAAGCTTATGAACACAAAAATACTTGAGATTGGCTTCTGTCCTTTAGATTTTACAATCGATTTATAGACCAAATAAAATTTAACTATTTTGTTTATTCAAATTCAGAAGAGCTATCCTCGTGTGATGTGACTGATCTTTCTAAACCGTATAGAAATTTTTCAGATTATTGTTAATAAGCAATCTCTTAAAAAATAAAAATTAAGGAAATTTATATTACTATTATCTAGGTACTAATTTTATCTTTTCTTTTAAATTAAAAAGGAAGAAAAAGTTAAATTTTTATTAAGTTATACACACGATTAATTATTAGCGTGTTAAATGTAGTATACTGTTAATATAAGAAAAGTCATCATAATATTTGTCAAAAAAAGTGACATTCTATATAGTAGTGTGTCGTTAGTTGTCACATTTTTTGACAGCCAAAATAATAATTGAACCCTAATGGTTATGCTATTTAGTGAAGCATCG # Right flank : CTCATCTTGGTGATCCCAATTGGCTTGGTTAAAAAGAAATCGATAACCCTCGTAGAATAGAGAACAAGTATTAAAAATATATTTGGTTTGATAAAATATTCTGCAAAAAAAGAGGAACAAAAAATCAAGATTTAAACTGTAATTCATTATTTTTGCAATTAATCAACATTCAATTTTTAAATAAACAGAAACAAAAATAACTTTCATACAAATAATTTCTTTGCGATTAAGTTGGAATTAGAAAACTAATACTAAACGAATGGAATGTATATTATTGAGGAGTTTGATGCAGTGTGGTCCAATTTCGAGAGCTACTACTTAAGAAAATAAACAATAAGAATTAAATCTGAATCAAGATATAAAAACAAATAGTTTTACCATAACTACATTAGTAAATACTTTATTATTTAGTATACGGATGAAAGCGAAGTGACAGCTAGCAATGCTCCAGATATAGGCATTAGTATTATGAAAGAGCAAGATTATCATTTAGAAAATGT # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATCGATAACTATCCCGAAGAACAGGGGATGAGAACT # Alternate repeat : GATCGATAACTATCCCGAAGAACAGGGGATGAGAACG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.60,-5.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 2 204795-205546 **** Predicted by CRISPRDetect 2.4 *** >NZ_WITG01000003.1 Staphylococcus epidermidis strain F530B NODE_3_length_226010_cov_47.7813_ID_1645, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 204795 36 100.0 38 .................................... CCTCAATTCCTATTACATATATAATGTTAACACTTTTT 204869 36 100.0 35 .................................... AAAAAAACCTGTTGACAATATCTAACATATAATGC 204940 36 100.0 36 .................................... AATATAAGCGTAAAAAGTATTGTCTTTATATTGACT 205012 36 100.0 36 .................................... TTCTGAAAGCCAACAATTATTTTAAATTCTTTTCGC 205084 36 100.0 37 .................................... CTTTAAGGTAACTGAAATTGATAACACTCTTCCAGAT 205157 36 100.0 34 .................................... GGTGCCAACCTGTGCCCCCTAAATCATTTCTGTA 205227 36 100.0 35 .................................... CATTTCAATCATATCCTTTTTAATAATTTTTTTAT 205298 36 100.0 37 .................................... TGTTCGTCTATGCCGTCATAATGTAAATCACTTACTA 205371 36 100.0 34 .................................... TTCAATAGCCCAATTAATAACATCTTTCTTCAGT 205441 36 97.2 35 ...................................T ACATCGTCAGCCATGTGGTTTGGTAAGTTTACAAG 205512 35 86.1 0 ..........T.................G.-...GT | ========== ====== ====== ====== ==================================== ====================================== ================== 11 36 98.5 36 GATCGATAACCACCCCGAAGAAAAGGGGACGAGAAC # Left flank : GCAAAAATGGATTTTCGTTTCTTATGATATGCAATTAATCCTCCAAAAAATTAAGCATAATGAAAATTGTAAGTTTCATGCGGTTCCTCATCTTAATTTCTATGAAATGAGGTACGACCTGAGGAGTAGGTTTACTGAGAAATAATGTATTTACGCTGGGGCTTCAAGTCCAATTTAGTTTTTACATTTCATACTTGCACATTATCAAACAAAATCAATTATTAAAATAGATGTTTAAGTATTTTTCTTCTTGTAGTGAGGGAACGTCTAATTTTTATTCGAAATATAAAAAGAAATGAAAGGTTAAATTAATATTAATTTTATTAAATGAATAGGCTAAACCATCTTAAATGTAGTATACTATTAATATAAATGTAATTATTATAAAATTTGTCAAAAAAAGTGACATATCCTATAATCTTGTACTAGTGATTGTCATATTTTTTGACAGCAAAAATGATGCTTGAAATATAGTTGTGATGGCATTTGTTAAAGTATCT # Right flank : TGTAAATCTAACAACACTCTAAAAAATTGTAGATTTTGAATAAAATACGCATTGATTAATTTCTAGGGGATGGAAAAATGAAAGATGTTATTTATGTAGAAAATCATTACTTTGTTACTGCGAAGGAAAATAGCATTAAATTTAGAAATGTCATAGATAAAAGTGAAAAATTTTATTTGTTTGAAGAAATTGAAGCTATTATTTTTGATCATTATAAAAGCTATTTTTCACATAAATTGGTAATTAAATGTATAGAAAATGATATTGCGATTATATTTTGTGACAAAAAGCATTCTCCAGTTACACAGCTCATTTCTTCATATGGCATGGTTAATCGTCTTAAAAGAATTCAAAGTCAATTTCAGTTATCGGGAAGAACAAAAGATAGAATTTGGAAAAAGATTGTTGTAAATAAAATTTTTAACCAAACACGATGTCTTGAAAATAATTTACATAATGAAAATGTTAAGCTGATGTTAGGTTTTGCAAAAGAAGTGAGT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATCGATAACCACCCCGAAGAAAAGGGGACGAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [15,2] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GATCGATACCCACCCCGAAGAAAAGGGGACGAGAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.80,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : III-A [Matched known repeat from this family], //