Array 1 108436-107674 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAMUS010000002.1 Escherichia coli strain RUBLA-0229 RUBLA-0229-00002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 108435 29 100.0 32 ............................. CGACAAAATTCTCAAAACTCGATCAGGAAAAT 108374 29 100.0 32 ............................. CCACCGTTTTCGCCCACCAGGGCGCACAACCC 108313 29 100.0 32 ............................. GAAAAAGAGAAGGTAGAGAAAGCGGAATCTGG 108252 29 100.0 32 ............................. CAGGTCTATCGGGCGATCAATAAAATCGGTCA 108191 29 100.0 32 ............................. GCGCACCGTTGCGTCGAAAAGGCGCTGGAGAT 108130 29 100.0 32 ............................. TACGCTTACACAACGGGCGAATATTTTAACGG 108069 29 100.0 32 ............................. GAACCCAATAGTGAAATACAGCATCATTTTTT 108008 29 100.0 32 ............................. ACCTGGAGGCGAAAAAGGCGCTTCGACGTAAA 107947 29 100.0 33 ............................. GAGGCCTATATCTCTAACCGCATCGGGCTGCGC 107885 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 107824 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 107763 29 100.0 32 ............................. CTGCGTAGCGACCTTTGCTCTCAATTTCGTTG 107702 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 13 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAACAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAATCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAGGTTATGTGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCCAACCCATCAAGACGCCTTCGCCAACTCTTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCAAACCTGACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCGGTGCCTTTCGGATAGTTTTTATTCAAACCAGGATTGGTCGTCGCGGCTATTCCCTGACTGCGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [40.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 125674-123937 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAMUS010000002.1 Escherichia coli strain RUBLA-0229 RUBLA-0229-00002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 125673 29 100.0 32 ............................. GCATTGACGCTTTAAACGACGACGGACGCCAC 125612 29 100.0 32 ............................. AAAACAGCCTTTAGATTAGTACCTGACGACCG 125551 29 100.0 32 ............................. AAAACAGCCTTTAGATTAGTACCTGACGACCG 125490 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 125429 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 125368 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 125307 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 125246 29 100.0 32 ............................. TGCCGCCAGGCCAGCGACACATCAGACAACTG 125185 29 100.0 32 ............................. GTCTGTGATGGCCTGCTCGTGAGTCCGCGGCG 125124 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 125063 29 100.0 32 ............................. TGCGCCGTAGCGTGTCCACCTATTGTAGTAAA 125002 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 124941 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 124880 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 124819 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 124758 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 124697 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 124636 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 124575 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 124514 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 124453 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 124392 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 124331 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 124270 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 124209 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 124148 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 124087 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 124026 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 123965 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 29 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATTAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //