Array 1 188955-190385 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAIZBL010000010.1 Salmonella enterica isolate 0347_07, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 188955 29 100.0 32 ............................. ATATCGAATCCTACGCCGATCAGGCGTCAGGG 189016 29 100.0 32 ............................. GGAACAACCATTCCCTCAATGAACGGGTTATT 189077 29 100.0 32 ............................. CGGACAGGCCTGCCAGTCGGGCAATATCCGTC 189138 29 100.0 32 ............................. TTGACGGCCTGGCAGCGCGTGACGTTATTAGC 189199 29 100.0 32 ............................. CCAGGCTGGTACTGTGCGCCATAAAGACGCCT 189260 29 100.0 32 ............................. CCGACCACAATCAGGGAACTGATCCAGCGTGG 189321 29 100.0 32 ............................. TTCAGATTGTCGCTTTTTGTTGCTGCCATTGC 189382 29 100.0 32 ............................. CGCATTATTAATGGCGTTGATGTTCTGGCGGG 189443 29 100.0 32 ............................. GTAATCAATCTCATATAGAGCGGGGGGGGGAT 189504 29 100.0 32 ............................. TTGATTGATCGTTATCAATGGGGAAAGAGATG 189565 29 100.0 32 ............................. TAATACCCGATCGAGCGCACTGTGTCGCCGGA 189626 29 100.0 32 ............................. TCCGGCAAAAATCCAGACCGACGGCGCAATGG 189687 29 100.0 32 ............................. TTAATTAATCATTTTGTTTAAATCCCGGATCA 189748 29 100.0 32 ............................. TGTTCGCGAACTGTTCACAAAATTGATTAAAT 189809 29 100.0 32 ............................. TACGGAAACATACGGCGCCCATTGCTTTTTCA 189870 29 100.0 32 ............................. CCTTATCAACTAATTCGTTCCTTGACACTCGT 189931 29 100.0 32 ............................. TACCGCGACACCGTCAACGACAGCAACCACTT 189992 29 100.0 32 ............................. CAGGTCACTAAAATTTGTAGGGTTATCCACAG 190053 29 100.0 32 ............................. GCGCAATTGCAGTTTGACGCGGTGCTGTCATT 190114 29 100.0 32 ............................. TCGTTTGTGGCGTCAGTAATACTATTATCGGT 190175 29 96.6 32 .............T............... TTTTTAAATCCGGACAGACCCTGTAACGGATC 190236 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 190297 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 190358 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 24 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGATCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGACCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 206655-209613 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAIZBL010000010.1 Salmonella enterica isolate 0347_07, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 206655 29 100.0 32 ............................. GTCACGTACTAGTGACGACATAGACAGACTGG 206716 29 100.0 32 ............................. CGGCGGGACCCCGCGATTTTCTCCCTGACGAA 206777 29 100.0 32 ............................. CTATCCGGGCGTTTACCGTGTGAGCGCCTCCA 206838 29 100.0 32 ............................. GGGGCTTCTCCGCCATCGTAGCGGATTTCAGA 206899 29 100.0 32 ............................. GTCCGGGCGACGTGGCGGCCGTGGTAGTACAT 206960 29 100.0 32 ............................. AGCTGGCGGATCTGTTCGTCACTCAGGCGGGT 207021 29 100.0 32 ............................. CTGGACGGGCGCGTGCTGGGTAATTACCCGCT 207082 29 100.0 32 ............................. TGGATTGCGGAAGATGATGGGGTGCTTAACCC 207143 29 100.0 32 ............................. TTGGCTATTTACGACGCGGCACTGGCCCGTTG 207204 29 100.0 32 ............................. TGGGTTGACGGTGCCGTGATTGACGTTGCCGC 207265 29 100.0 32 ............................. GGGCTAAATTTGATAAGTGGGAACCGTCAAGG 207326 29 100.0 32 ............................. CTAAATACGGGCCATAGCGGCAGTATTACCAC 207387 29 100.0 32 ............................. GTATTAATTGACGTGGTGACGATGCGTCGTAA 207448 29 100.0 32 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTG 207509 29 100.0 32 ............................. GCCTCTGTAATTGATTCCAGCGTTATTTGCTC 207570 29 100.0 32 ............................. TCTAATGCTTCAATATCAATCATTATGTTATT 207631 29 100.0 32 ............................. CCCGAACTGATTGATGCCATCAGTCAGGGGGC 207692 29 100.0 32 ............................. TGTGGTGGATCACCGAGTGTAGAAAGCGGCCC 207753 29 100.0 32 ............................. ATGATCGCGCCCTCATCTCCCCAGATTTTTGA 207814 29 100.0 32 ............................. GCAAAACGTCTGCAATGCCTTTTTTAACAAGA 207875 29 100.0 32 ............................. CCTTGTGTTGCTCTTTGAATTGCTGCGCCATA 207936 29 100.0 32 ............................. GCGTCTCCCCTGTAATTGTGACGCTGTCATCC 207997 29 100.0 32 ............................. GGCGTAATACATCATCACGCACAATGACCATC 208058 29 100.0 32 ............................. TTGATATCCGCCTCAACTACTACGAGGGTGAA 208119 29 100.0 32 ............................. TTTCGTCGGAGCTGGTGGACGTACTGGAACAG 208180 29 100.0 32 ............................. AGACACAATACAGCGTATCCACCCCTGAAGAG 208241 29 100.0 32 ............................. CTGAGGTTGAGCCGCAAAAGATTGTGACTGAT 208302 29 100.0 32 ............................. TAGGCTTCTTTCAGCCTGGCGGCTCGTTTACC 208363 29 100.0 32 ............................. AATGTTGCACTCACCTCTCTCGCCACAAAACC 208424 29 100.0 32 ............................. TAACTCACGTTTGCGAGCTTCCATCTGTGCCG 208485 29 96.6 32 .............T............... CCGCGCTGGGCCAGCCGCATAACGCTGGAAAT 208546 29 96.6 32 .............T............... AAAATGAACTCACCGCCTACAAAGACCAGTTG 208607 29 96.6 32 .............T............... CCAATACGTATACTGACAACAGTATTACTGAC 208668 29 96.6 32 .............T............... TACGCCCCGAACGCGGGGCTGGCTGCTGACCA 208729 29 96.6 32 .............T............... GTAATCCGCGCTTACGATACAATGATGGTCGC 208790 29 96.6 33 .............T............... ACGACGAATGCAGCGCAGACTACTGGCGCTGAC 208852 29 96.6 32 .............T............... GCGCTATTCCTACCCCCACACCCCGATCCCCC 208913 29 96.6 32 .............T............... CCGCGCCTTATCGTCGTACATACCCGGCGGTA 208974 29 96.6 32 .............T............... AAAATTGTATCATGTTTGGATTGCTGACAGAT 209035 29 96.6 32 .............T............... GCTGAGTAGGAACACATATTAACCGGCCCTTC 209096 29 96.6 32 .............T............... CGAAAAAACGGGCGCTGCGGGTCATTTTCGAA 209157 29 100.0 32 ............................. ATCCGCGCCTTTCCACGCTTAAACGTTACGTA 209218 29 100.0 32 ............................. TTGTACTGATCATCTTCCAGCCCGGCAAACGC 209279 29 100.0 32 ............................. CGTTCTTCCAGCACATCCTGCGGCTGCACGAC 209340 29 100.0 32 ............................. TCACGCGGGCCCCCTTATTGGGTCGGGCAGGT 209401 29 100.0 32 ............................. GGCAACTGGGCGATCATCTGGGCGCTGTTTAT 209462 29 100.0 32 ............................. CGCTGATATTGTTCGCGCAGATCGTCGTACTG 209523 29 93.1 32 .........................GT.. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 209584 29 93.1 0 A...........T................ | A [209610] ========== ====== ====== ====== ============================= ================================= ================== 49 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCATTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATTTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAATGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTTGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACTGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //