Array 1 1223-174 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACGBE010000013.1 Campylobacter canadensis strain L279 L279_contig00013, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 1222 37 100.0 35 ..................................... CTAAAAACTTCAAGAAGAAGTGATGTTGTTGCACA 1150 37 100.0 36 ..................................... ATATCTTTTTTAATATTAATTTGTTTATTAATAGCT 1077 37 100.0 35 ..................................... TTTATAGGATTAGGAATGCCACCACCAATAGCTTT 1005 37 100.0 35 ..................................... GATTTGCTAACTACAAGAGACTTATGTTCCTTGTT 933 37 100.0 35 ..................................... TCAAGCTCTAGCACACCACCAGCCACGATTTGCTG 861 37 100.0 35 ..................................... AAAGATTGGGGTTTTGAAGACAGTCAGAATGCTCG 789 37 100.0 37 ..................................... TCGCTTAATCTTGCCCTTAAAACCTTTTCATTACCCT 715 37 100.0 36 ..................................... TCATATGTTAATAACGAATATTTAATTAACGTTGAT 642 37 100.0 35 ..................................... GTAGTACGAATTAAACATCTTTTTCCAACTTCATA 570 37 100.0 35 ..................................... CTAGCATTTAAAGATGCAGACAATTCGGTTTATCG 498 37 100.0 35 ..................................... TTCAGTTCATTATCGTCATTATATCGCAAATTTTG 426 37 100.0 35 ..................................... GAGATGAAGCTACTTGAAACTTCAATTTTAGAAGA 354 37 100.0 35 ..................................... GTTTCGAGTGCTGAATCGGTGCCAACGATGCCAAT 282 37 100.0 35 ..................................... CCATAGGCAATTGAATACAACTTCTTGTCATTAAA 210 37 97.3 0 .............................C....... | ========== ====== ====== ====== ===================================== ===================================== ================== 15 37 99.8 35 CTTTCAAACCTAATTCTAGCAAAACATGGTTTGAAAC # Left flank : CCTTCTAGCTAGTCTTGTTCTTTTAAAACCTCTTCTTTGATGTCTTTTCTTGGTTCTATCTTTTTTTAAAAAATTTATAGAAGATGGTTCAAAGATATAATTCGTAGCAGTTTTATCTATAATCTTGCCATCTTTTGTATGAGCTAAAAACACCCCATTATTTTTCGCTCCCATATCTATACTAATGTGAGTTTTCATGATTTCTCCTAAATTTATGTTTTAATGGAATTTTATTTAGCAAAGATTAACTAATAAGATTTATCGGGGTGGCTAAGCCAGTTGCCCGATATTTTACCAACCTTGTGGTGATTTCAAACTCTTAAATATTTTGCTAGAATTAGGTTTGAGTTGATATATTAGGCTAAAATTCTTAACCATAAGCTTAAATTTTTCTTATTTTTCCACAAAACGGCTGTTTTTTGCCGAAATTTTCAAAGTGGAAAAATAAGCAAACTTTAAGTTAGCTCAAATCCTTACAAGCTAGACAAGTTTATCTAGCT # Right flank : CACAATTTCTTCTTATTTATCTTTTGCTTACTGCACTTCTTTAATTTCTCTAACCAAATTATTTATCTAAAATATATTGATTATTGTAAGTCTTAATTGTTAGTTTGGCAAAAAGCTATATTCTTTAGCAAGTAGTATTTTTACATTAAAGAACGGATTAAGCAGTGTGTTAAA # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCAAACCTAATTCTAGCAAAACATGGTTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.00,-2.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 1 38-282 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACGBE010000017.1 Campylobacter canadensis strain L279 L279_contig00017, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =================================== ================== 38 36 100.0 33 .................................... CCATAAGGCTTTCATATTAAAACTAACCTCATT 107 36 100.0 34 .................................... TTGTAATCAGGCTTAAATTCTTCATGGTATTGCT 177 36 100.0 35 .................................... CGCACGGCGTGTGTCCTTTATTATCCACTCCCCTT 248 35 91.7 0 ...............................-..GG | ========== ====== ====== ====== ==================================== =================================== ================== 4 36 97.9 34 GTTTAAGAAGATTGCCCCGCTTTAGGGGATTGAAAC # Left flank : TTTTACCTGCCTCAACGGCGTATTGTGTGGCGATGAAG # Right flank : GTTCCTGTTACATTTGGGATATAATATTTTCTTAAAGCTATTTAAATGATGTTATTAAAAGAATTATTTATTTAAAGTTTTTAAAAGCTTAATATGCCTTCTATTAAAATATAAAAAGTAATAAATATGATAAAAAGTTATAAGCAAAATCACCACACTTATTTTTTAGTTTCTAATATTATTAGCACATTTATTAATTTTTATATTTATAAATAATTAAAAAATTAGGCAACTTACCTTAGATAAGAGTTTTTAACATTTTATTACTTTTATATATAGCTTTGAAAGTTAGTAACAAAAAACAAATACGAATAAGGATTAATATTGTAAAAAAATTTAATTTTTTTTATTAATACTGTGTCTTTATTAACCGTGGGGGGGGGTATAATGATATGAAATATAAAGAAAGGAGTAAAAGATGGATAAAGCAAATGCAAACCATAAAGCTAATCAAGCAAATGCAAACAAAGGTAGTGCTGGACAAAATAAAGCACATTCTC # Questionable array : NO Score: 5.76 # Score Detail : 1:0, 2:0, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAAGAAGATTGCCCCGCTTTAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.10,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : NA // Array 1 71076-70271 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACGBE010000008.1 Campylobacter canadensis strain L279 L279_contig00008, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 71075 36 100.0 37 .................................... TATGGTGTATCGTTTACAACGATACATACTCCATAAG 71002 36 100.0 35 .................................... CTCTTGTTTAAGACAACAAAAGCAAATGAACAAAT 70931 36 100.0 33 .................................... TCATAACCTAAACTATTAAAATAAAAATCAGAG 70862 36 100.0 33 .................................... AAAAAATATTTGGAATTCATTTTTTACATTTAC 70793 36 100.0 35 .................................... ACATTGTTCGCTTCGTCGTTCTCCAGCCTTGAAAA 70722 36 100.0 34 .................................... TGAAATCTTTTTTAAGACCGATATAGTGACTTGT 70652 36 100.0 32 .................................... TTATCTAACACTTTGCTGAAAAGTTCTTGTAA 70584 36 100.0 33 .................................... AACATTATTTCTTTTTTTATGAAATCTTTTTTT 70515 36 100.0 31 .................................... ATTTATATTTAAATCAGCTTTGAAAATATAA 70448 36 100.0 33 .................................... GGCATTCGCCACCACAGAAATATATTTGTTTCC 70379 36 100.0 37 .................................... TTTGATAAACCTATACCTTTTATCACTTTGTCTACTT 70306 36 91.7 0 ..C......T...A...................... | ========== ====== ====== ====== ==================================== ===================================== ================== 12 36 99.3 34 GTTTAAGAAGATTGCCCCGCTTTAGGGGATTGAAAC # Left flank : TAAATAACTTTCTAATAATTGCAATTCACTAATT # Right flank : ATTCGCCAAATTATTTTCAAAACTTTCATCAGCTTTTGTGCAAGAAAATTACTATTTATTAGATTAGTAAAAAGAAGTAGCAAAAATGATTAAGCTATCTAAATACGAAAACGCAAGTAAAAATGAGATTGCAAAAGTAATTGATAAATATTTTGCTAAACTTAAAGAATAAAAAAATCAAAAAAACACAAAAAGCTATAAAGCAATTACAAAAGTTTTTAATCAAAGCTTGAAAGCTAACAAAACTAAAAATTATAAGTGGCTAAAAGAATATTAAAAGTAATGAATTTATAGAAGCACTAAAAGAAGCTGAAGAATTAAAATAGCTTATTTGCGTGAAGAAGTGCAGTATTTAGAAGTTAAAGAATTTGTTAAGGAAAGTATGAAATGATAAAGCTAATTATTAAAGAACAATAGCATATAAAATAGCTTTAAAAAAATTAGGTAAATATAATAAAAAACCAGCATACAAAATCATTCATTGTTTAGCTAATGCTGAA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:0, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAAGAAGATTGCCCCGCTTTAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.40,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : NA // Array 1 34-427 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACGBE010000010.1 Campylobacter canadensis strain L279 L279_contig00010, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================== ================== 34 36 100.0 36 .................................... CCATACCCCAATAATGACTCGTTGTGGTGATGTTCT 106 36 100.0 36 .................................... ATCAGAAGGCTTCATTTCATATCTATTATAACTTTT 178 36 100.0 36 .................................... TTTTTGTAGATGGTATCTACTCATAAATGCTTTTTT 250 36 97.2 35 ............T....................... ATAAGCCTTGTTTTGCTTTAGCTATTTTTTTATTC 321 36 97.2 35 ............T....................... TGCAGTCTGCCATTGGCATTCCGCACTCGTCTAAT 392 36 94.4 0 ............T......................A | ========== ====== ====== ====== ==================================== ==================================== ================== 6 36 98.1 36 GTTTAAGAAGATAGCCCCGCTTTAGGGGATTGAAAC # Left flank : GACAACTTAATATTTTTTAGCAGCTGATCTACCG # Right flank : ACTTAGAATACTTTGGGATAAGATAAAAGATATTAAAAATCCTATGTCGCACTGTACTACTGAAAATATCAAATTTGATGTAAATAAAGAACTTCAAAGTTGCTTAGATGTGTATCAAAATTATATTATAAAAAATGATGTTTTAGCTAAGTAGTTTTAAGGCTTTTGCCCTAGCCTACTTAACTTTTTGTATTAAATAGTTATTATAAACTATATTATCTTTAAAACTCCCTAAATTTTATATGCTTAAAAATGCTTTGTTTTACACCGTTTTCATCTTTTAAAACCTCTCTTTTTGTGGTGGCATAAACGGGTTTTAATGATTTTGCTTTAGCATAATTTATAAGCTTAAAGCATAATCCAAAATCACCGCTAATAAGCAAAAAATCACCTTTTTTAGTATTTTTATCAATGTATTCATAAAAATCCTTTGCGTATTCATCTAAGCTATCAAGGCTGGGCGGAACATTTGAAAACCTAGTTTGTAAATCCTTTGGCAA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:0, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAAGAAGATAGCCCCGCTTTAGGGGATTGAAAC # Alternate repeat : GTTTAAGAAGATTGCCCCGCTTTAGGGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.10,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : NA //