Array 1 1913-18 **** Predicted by CRISPRDetect 2.4 *** >NZ_NXDI01000004.1 Moraxella catarrhalis strain 1034084Q 1034084Q_contig_4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 1912 28 100.0 32 ............................ TCAACAACAATGATTTGTCTGATATTGAAGTG 1852 28 100.0 32 ............................ TTTATCTGACTAACCTGTATATTTAATATACC 1792 28 100.0 32 ............................ AATAAATATGAGATTGGTGCAAACACCAGCGA 1732 28 100.0 32 ............................ ACTGTGCATGATATTGATATTTTGGAGATATG 1672 28 100.0 32 ............................ ATAACAGCAACAGGTACAACCGCCGATAAGAT 1612 28 100.0 32 ............................ ATCAGAATTGAACAAATTGTTGGTAAGCAAAA 1552 28 100.0 32 ............................ TTTGGCACTTGCCGCCGCTTGCTCTGGATTTT 1492 28 100.0 32 ............................ TTGAATGCATTGCCTAGGATGGTTCGCTCATC 1432 28 100.0 32 ............................ TAGAAAGCGTCCTAGCGTGCGTTATATTGCCG 1372 28 100.0 32 ............................ CACGGCTCTCATGAAAACACCGCTCCAGTCAT 1312 28 100.0 33 ............................ ATATTAGATGAAAAGCGATTGGCGGAGTTGGTG 1251 28 100.0 33 ............................ TTTGGCACTTGCCGCCGCTTGCTCTGGATTTTC 1190 28 100.0 32 ............................ GTAAACTTTACGCCCAATGTAGCGACTATTTT 1130 28 100.0 33 ............................ AGTATGGAATCGGCAACTACTCAGCTTGGCTAT 1069 28 100.0 32 ............................ ACAGGCAAGAATACTTATCATTTTGGGCATTG 1009 28 100.0 32 ............................ CAATCATTAATGCGTTGGCGGTGGCGTTTTTT 949 28 100.0 32 ............................ AAAAACTGCAAGCACTTGGAATATTGATTTTC 889 28 100.0 32 ............................ TTTATCACAATGCGTCAAACACAAGAAGCATT 829 28 100.0 33 ............................ ATAAAAGTGCTGGTAATAGCGATGTAACAGCAG 768 28 100.0 32 ............................ AAAAGCGTGCAAGTAGAATCTAATTTGCCCAA 708 28 100.0 33 ............................ GCTGATGTTGCTTTCAATTGTGCCGATTTTGCC 647 28 100.0 32 ............................ ATACATTGCCACCAATATCAGATAGACTTAAA 587 28 100.0 32 ............................ TGTGCCAAGTCCTGGTACAAGCCCTGATACTT 527 28 100.0 32 ............................ CATACAAAATTCATTAAAAATAAGCTCTTGTT 467 28 100.0 32 ............................ CAGTGTACCACCACCAGTTAGACCATTACCTG 407 28 100.0 34 ............................ GCACAAGAGATTATTTTGGTTCCGCCAAGCTCTG 345 28 100.0 32 ............................ AATAGATTTTTTAAAAGTTTATTGGTTGTTTT 285 28 100.0 32 ............................ ACCCAACCCATAGCGTTCGGCAGTGCATAGGT 225 28 100.0 32 ............................ TCTTGACCACAGTTTACGCACGCCGATTGGCA 165 28 100.0 32 ............................ AAATTCCTTTAGTGCTTACCAATACAGCTATA 105 28 100.0 32 ............................ AATTCACGGATTGATGAGGTATGAGACCCCAC 45 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 32 28 100.0 32 CTTCACGACCGCACAGGTCGCTTAGAAA # Left flank : TGCCTGTGCCAAGTAAAATGACCGTCGTGTTGGCGATCGGAATATTATAATAGTGGTTTTGGTATTTCGTTTCGGTCAGGTATAAGATACGCCCATCTTTTTGCATGACTCGGCAATGCTCAAGATAAAATAAATTCGCCCGTTTGGAGTGTAAAATTGCTTTCAAATCGGTCGGTTTGAGCGTATTCATAATAATACAAATCCATGTTTAATGATTCAATTTTATCCTAACAATTTTCAACATCATTTAATATGATTTTATTGGATTATAAACTAAAAATAAATTTATACCAATCATTTTTTAATTGTATTCAGCGATTAAAATGTTTTAAGATAACCCAACCAGAAGATGGAAAAATAACTGATTGACCCTTTATTTTTTTACTATTTAAAAACTTGAATATTTTCAATAAGTTATAACATGAAGATTTTTGATTGGGTTTTTGACAAATTTTATCATAATTACTTGTTATTTCTTATTATTTTGGTTTATACTAACT # Right flank : ATACTAACTCTTCACGAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACGACCGCACAGGTCGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.10,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [16.7-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 35664-34337 **** Predicted by CRISPRDetect 2.4 *** >NZ_NXDI01000009.1 Moraxella catarrhalis strain 1034084Q 1034084Q_contig_9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 35663 28 82.1 34 ..C....C.......T..T........T CACCCATATATTATACTGGTCTCGCACTTCTCTG 35601 28 92.9 32 .......C....T............... AATAGATGTTTTAAAAGTTTATCGCTTGATTG 35541 28 100.0 8 ............................ TAACTCTT Deletion [35506] 35502 25 89.3 5 .........................--- CTTAG Deletion [35478] 35480 28 100.0 32 ............................ TTTTATCATAATTACTTGTTATTTCTTATTAT 35420 28 96.4 32 ...................A........ CACTCAATGTATAACACCGTCCGCACCAGTGA 35360 28 100.0 32 ............................ ACTTGCCCAGTCTGTCCAATCGCTTGTATTGC 35300 28 100.0 32 ............................ CTGGCGGCTGGGAAGTTAAACAAACAGCTTAT 35240 28 100.0 32 ............................ TTCAGTTCTTTCACTTGATAATGAACCTGCTT 35180 28 100.0 32 ............................ TATATCCGCAGAGCTTTAGCAGATAATGGTAG 35120 28 100.0 32 ............................ ACGTGTGAAAAAGCGTGTCACTGCATCATAAA 35060 28 100.0 32 ............................ AACTTTTTAAAATACTGCTTGATGGATTCATC 35000 28 100.0 32 ............................ TACTTTAAATAATTGATTGTTCATAGTTTTAA 34940 28 100.0 32 ............................ TACTTTAAATAATTGATTGTTCATAGTTTTAA 34880 28 100.0 9 ............................ TTTTGCTGT Deletion [34844] 34843 28 100.0 32 ............................ AGTATTTGTATTGATTGATGGTGATTGAGTGC 34783 28 100.0 32 ............................ GTTGAGCTGTATCCTCTGATTCTCTTATTGAT 34723 28 100.0 32 ............................ ACTTGATTTAGTAGCTAAGCTTGATGTGTCAA 34663 28 100.0 32 ............................ GCCTTGGTGTTGTCAGTTTTTGAGCAGAACGA 34603 28 100.0 31 ............................ AAAAACCGTTGTGGATAAAATCGCTCCTCTA 34544 28 100.0 32 ............................ GAAAACATGGGCTTTTTATCGCCGTGCGGACT 34484 28 100.0 32 ............................ ATAATTAACAGTTGCACAACCAATCTTAAAGA 34424 28 100.0 32 ............................ ATTGACTGAATTTACCGCAGTTTCAATCGTTG 34364 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 24 28 98.4 29 CTTCACGACCGCACAGGTCGCTTAGAAA # Left flank : CACAGTTGTAGCCGTCTCCT # Right flank : TTTTGTTCTATGGCTACGCTGATTATTTAAAATTTTTGTGCCAATCCCTTGAAAATTTTATCCTTAACCATTATGAAGATGGGGAATTTATATTAACTTTTTTGGGGCAATTTATGACCGAGCAAACCACCGAACAAACCACTATGGAAGAGATTATGGCTGAGACGACAACCGAGCAAGTCGAAGCACTTCATAGCCAAATCCAAGCGCTAGAAAATGAAGTCAAAGAAGCCAAAGAGACTGCCGCGCGTGCCAATGCCGAAAGCTATAATGCCCAACGCCGTATGGAACAAGAAACCGATAAAGCCAAAAAATTTGCACTACAAAAGTTTGCCAAAGAGCTTTTGGAGGTGGTTGACAACCTAGAGCGTGCCATTAAAGATGCTGAAGAGACAGGTGCAGATGACGCATCACTTGAAGGTATTCGCCTAACACATAAAGTACTGCTTAGCGTTCTTGAAAAAAATGGCGTCGTGGCCGTGGGTAATGTCGGTGATACA # Questionable array : NO Score: 5.90 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:-0.27, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACGACCGCACAGGTCGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.10,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-15.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //