Array 1 257190-258803 **** Predicted by CRISPRDetect 2.4 *** >NZ_WRYN01000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain B1532 NODE_1_length_333315_cov_84.540959, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 257190 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 257251 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 257312 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 257373 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 257434 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 257495 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 257556 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 257617 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 257678 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 257739 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 257800 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 257861 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 257922 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 257983 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 258044 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 258105 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 258166 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 258227 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 258288 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 258349 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 258410 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 258471 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 258532 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 258593 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 258654 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 258715 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 258776 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 27 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 274936-275575 **** Predicted by CRISPRDetect 2.4 *** >NZ_WRYN01000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain B1532 NODE_1_length_333315_cov_84.540959, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 274936 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 274997 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 275058 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 275119 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 275180 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 275241 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 275302 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 275363 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 275424 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 275485 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 275546 29 96.6 0 A............................ | A [275572] ========== ====== ====== ====== ============================= ================================ ================== 11 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //