Array 1 4432415-4431042 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP081346.1 Pseudomonas aeruginosa strain SE5419 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 4432414 29 100.0 32 ............................. ATGGCATAGTCAATTTGCAGGACTTTGCGGAG 4432353 29 100.0 32 ............................. CTTTGATCGTATACCCGTTATATACCGCCCAA 4432292 29 96.6 32 ............................A CCATTCCCTTCTGGGCCATGGAAGCGACCGGC 4432231 29 100.0 32 ............................. GATAGACACCTTCCGATGTGCATGTTTCAGCG 4432170 29 100.0 32 ............................. CCATCGACCTTGCAGTCGAGGCGCTTGAGACC 4432109 29 100.0 32 ............................. GCGGTAGCGAACACCGCCGACGCTTACCAGGC 4432048 29 96.6 33 ............................A GCGGATCCGCGCCCTCGGCTATATCGTCGAGAA 4431986 29 100.0 32 ............................. CAGTTTCTGGTCGGCCCGCTTGGCCCAGGCAT 4431925 29 100.0 32 ............................. CCGCGACGCCGGTCCCTACCGCCCGCCATTCG 4431864 29 100.0 32 ............................. GCAAGTCGCCGTTCGATGGCGACCAGGTCTGG 4431803 29 100.0 32 ............................. GAGGCAGGAGGAGGCGAGGACGAAGGAGCAGG 4431742 29 100.0 33 ............................. GCAGACCGGGTTCCCCTACGCGCCGGTGTTTTC 4431680 29 100.0 32 ............................. CCTGATGAAATCGCCAAGGCCATTGGCATGAC 4431619 29 100.0 32 ............................. GAAGTGCCTCAAGCCTGGATCGACGTGCAGGC 4431558 29 100.0 32 ............................. GTGCCCGAACAGGTCATGGCGGCGCTGCTTGG 4431497 29 100.0 32 ............................. CACGGCTTCTCCATCAGCTTCCGCATGCCGCG 4431436 29 100.0 32 ............................. ACCTTCACCGTCGGCGAGTTCGTCGTGATCGG 4431375 29 96.6 32 .............C............... ACGAATGGGATGCAGTGCCCTTCGTCATAGTC 4431314 29 100.0 32 ............................. ATCGGCGCGCTGATGCAGCAGATAGTCGACTT 4431253 29 100.0 32 ............................. ATCGCGGAGAGAAGGGCCTGGTCGAGACGGTA 4431192 29 100.0 32 ............................. TCGCCGGTGCGGCCGTGGGGTTACGAGCGGCC 4431131 29 100.0 32 ............................. GTGATGGAGCGGACCGCCCCGAGCACCGCAGA 4431070 29 96.6 0 ........T.................... | ========== ====== ====== ====== ============================= ================================= ================== 23 29 99.4 32 GTGTTCCCCACATGCGTGGGGATGAACCG # Left flank : TGACCCGCATCATTCCCACCATCGAAGAGGTACTGGCCGCCGGCGGCGTCGAACCTCCCAGCGCACCGCCCGAGTCGGTGCCGCCAGCCATTCCCAACCCGGAGGGAATCGGCGACCTCGGGCACAGGACGCAAGGGTGAGCTTCCTGGCCGTAGTGGTGGAAAACGTCCCGCCGCGCTTGCGCGGACGTCTGGCAATCTGGCTGCTGGAAGTCCGCGCGGGCGTCTATATCGGCGATGTATCGCGGCGTACCCGGGAAATGATCTGGCAGCAGCTGAGCGAGGGCTACGAGGAGGGCAACGTGGTAATGGCCTGGGCCGCCGCCAACGAATCCGGCTACGAGTTCCAGACCCTGGGCGTTAACCGTCGACATCCAGTGTTGTTCGACGGGCTGCAATTGGTGGCATTCCAGCCTCTGGATCGGACCACGGAATAGAGGATGAGGCGGTAGATTTTTCGAGGTGTTTTTTCTTCTTTAAAAACAATTCTGTACGGTAAGT # Right flank : TGGAAGTACGCTCGCGCAGCGAGGATGCGATATATGCACGGGGCGAGCCGTTCACTTGAAAAGCCGACATTCCTGGCTGTCCTGTATTTCCCCTTTGGCATGGATAGAGCAGCCCCATAGGGCGAACGACGCCACCGGCGTCATTCGCCATGGTCGGGTCAACCGGAACGTCGATCGGCTACCAGGCGCTGCTGCAGGCGCGTCAGGAAGGCCACTTCGAAGGCGGTCTTCTGCATCGGTGTGGGCAGGCTGTCGCGGCCGAAGGCGAAGGCGGTCCAGAGCTGGCCTTCGATCTGGTCGGCAAGCCAGTTCTCGGCCTGGCGGACGCCCTTGTCGATGGCGGGCTGGGCGGGAACCGGCCAGAGCAGGGAGAGACCGGGTTGCCGGTCGGCGGGGGGAATCTCGACCATCAGGTCCTTGTAGCGTTCGATGATTGCGTCGACGTGGGTCTTTTCCTTTTCATCCTTCGTCATGCTGGGTACTCCGTTTCTGAGAGTCAC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACATGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 4442409-4441588 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP081346.1 Pseudomonas aeruginosa strain SE5419 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4442408 29 100.0 32 ............................. CTGTTGTCGTATCCGGCGCTTCCGCTATCGAG 4442347 29 100.0 32 ............................. CGCGCCTCCGGGAAGCCGGCCGGCGCGTTGAT 4442286 29 100.0 32 ............................. CGGCAGTGACGACGCTGGCAACGCTGGTTGGG 4442225 29 96.6 32 ............................A TGGCCCGGCGCGTCAGCTTGAAGGTGGCCAGC 4442164 29 100.0 32 ............................. CTGGGTAGTGGCGGTGGCAGCGCTCCGAGCGA 4442103 29 100.0 32 ............................. ACAGTCACGCGGCGAGTGATGAAGCCGCAACC 4442042 29 100.0 32 ............................. GAGTCGAGGGCGCGACCATTGCGCTGGACGTG 4441981 29 100.0 32 ............................. GCCCCGGCGGGACGTCTTGGCGCCCTCCTTTA 4441920 29 100.0 32 ............................. TCGTTGTAAGTCGTGACCCCGAAAGAGATCAC 4441859 29 100.0 32 ............................. TAGTCCTGGCGGATATCGCTGCACCAGTGCAT 4441798 29 100.0 32 ............................. CCTGCATCAGATGCGGCCTCCTTCACGCGGGC 4441737 29 100.0 30 ............................. ATGGAAGACCCAACCCGCGGCCAGGGGTGG G [4441723] 4441677 29 86.2 32 .G............C..........G.T. GTATCGACATCGATGGTGACCAGGCTGGTCCG 4441616 28 79.3 0 A..........A..C.....-..A....T | C [4441607] ========== ====== ====== ====== ============================= ================================ ================== 14 29 97.3 32 GTGTTCCCCACGGGTGTGGGGATGAACCG # Left flank : GGCATCGTTGTACAGGGCGACGAATTCCGCGCCCCAGAACAGCACGATCTGCGCCTTGGCCGGCAGCAGCGTGGCCATCGTCGTCTTCAGGCTCGCCGACCAGGCGTCCGGCGGGCCGAGGGGCGAACTGGCCGCGTCGAGGCTGAGCAACAGTTTCCCGACCGCTCCTCCGTTGGCCAGGAAGGCCGGTGGATGGTCGAGGGGGTTCGGGTCCGGTTCGATGGTGAAAGGCTGTGCCATGTCTGCGGAGTCTTGCTCGGTTCCGGTTGAGGTGGTGGGTCGTATGGAATATAGGAGGGCGGTGGGTGCGCTTGCGTTCAATCAGCTTGGGGGACCGCGGGATCCCGATGCGGGTAGGTTTCGAATGGTCCCGAGGGAGCTGCCGGATTAGGCTGTGGGATGAGTACGGCCCTCATTTCCAGGAGCGGCGCGAGGGCCGCTTGGCCCGGTGGAATTTTGCTGTTGTTTTTCTTTTTTTAAAACAATGGGATACGGTAAGG # Right flank : GTCTACGCTCCTGCGGTTCGCCCCACCGCGCGGTATTTCCCACGGTGGGGCGAACCGCGCGGCACTACGACCAGTGGCGTGATCACCAGTGTCAGCCGCCAGTTGCCGGAGACGCGGATCGCCCACCGTCCGGCAAGATCCTCTTTCAGGGCATGGAGTTTCCAACCAACCTGGTTCACGTCGCTGGGGATGCAGGCTTCGCTCAGCACGAATAACTGACGGCGCAGGCATTGGGCGGGGGTTGCCTGGATACCTTGCCCTTACCGGTCTCGAAGAAGGCTTCCAGCCCCCCTGTGGCGGAAGGAAATAGATTGTGAACAGGCGGCAAGTGAAGGTTGTTAGTGAGTTAGCGGAATGTCCGACGTTCGCTGTTGCACCATGGAGTTCCTGCTAATTTGGACAGGGTGGTCGGTCCGGTCCATATCCCTCCTGCGCTCCTTCGCTTGCTAAACGGGGGTGAACAGGCGCATCCCTCGCTGGCTGCTCCTTGACGAGCGTCA # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGGGTGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGGGTGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //