Array 1 24515-25622 **** Predicted by CRISPRDetect 2.4 *** >NZ_MUFI01000051.1 Salinivibrio sp. MA440 scaffold51.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 24515 28 100.0 32 ............................ AGAACCACCTAATCCGCCACACAAGCGCGATT 24575 28 100.0 32 ............................ TCGACGGCACCGACGCAGCCAACGCCGTCCGC 24635 28 100.0 32 ............................ ATTCAGCGTGGTCGCCATTACGGCCTACCCAT 24695 28 100.0 32 ............................ AACGCGACGCAGCGAATTACGGTGCAGCGCAT 24755 28 100.0 32 ............................ ATGTCATCCAGCGTGGCGTTCAAGCCTGTCAT 24815 28 100.0 32 ............................ TTAACCAGCATCCGTTACCGCTGTTGCTAGCA 24875 28 100.0 32 ............................ AGCTTTTGGGGCTGCGGTGGTCTTGTTCTGTT 24935 28 96.4 32 ....................A....... AGATTAATCTCCAACAATCCGACAATTATCAA 24995 28 100.0 32 ............................ TTAATGAGATTGCCCGTCCCCTCACCTACGTC 25055 28 100.0 32 ............................ ATTTTGCTTGAAACGAAATTGCGGCCATCTGT 25115 28 100.0 32 ............................ TGCTTAAATGGTTGAAATCGGTACTGGGTGAG 25175 28 100.0 32 ............................ GCGTAGTGCCACTCGATACGCAGTACAAGTAA 25235 28 100.0 32 ............................ TGACGAACCAAAAATCGGGCTTACTAGCCCAA 25295 28 100.0 32 ............................ ATCCCGATTCATCCGTAAGCGCAACAGGCTTA 25355 28 100.0 32 ............................ TCGCTGCATTGTTCGACGGCAGTGCCGAGTAC 25415 28 100.0 32 ............................ TGTATTCGCGAACATTGAGATTAAAGCACTTG 25475 28 100.0 32 ............................ TGTTGCAAAGTTGGGACGTCAATCCTTCTATT 25535 28 100.0 32 ............................ ATAGCCCAGCGCGAACGCGCTCAACACTGTGT 25595 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 19 28 99.8 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TCGCTAAACCTATCACTTTTTGGCGGATTTTATTTTGTATTGCGTCTTGCAATGGCTACGTAAGACGTGCTCTGACCGTAGGGCCTGATGCTTGGTTTTACGCCCGCGCGTCCGCTCACGCCATACCTTAAAGCTGCGTGGTTTTAACTCGCGCCGCATCAAAGCGATGACGTCATCCTGACGCAAGCCATACAGCGTCTCAATCGCCTCAAACGGGGTTCTATCTTCCCACGCCATTTCAATGATCCGGTCAATGTCTCCCGGTTGCTCGTTCAATGCCATATCGGTCTCCTTGCTCTAGTGGCAAACAGTACGCGTCGAGCATGAAAGACCGATCAGCGTGAGCCCTCAGACTGAGCAATGCTTTTACCCTTGTTTTTGGGATATTTAGAAATAAATAGCGAATACAGTCAGTTACGACTGGGCGTTTTAAATAAGGGTAAAAAACGATTTTTATCCTAACGGCCTGTTGTCACAGGCTATTATTTCGTTATTCTATA # Right flank : AAGATTAACGACCTGGCCGTCTGTCACGATCAGGGGTTAATCGTTGGCTCCGATGTCGGAGGCGCGCAGTCCGCTTGGGTAATACATGACAGACATCGTACTGGCGCTTGTCCGACCTACACACCATTTTAATATCGGCGGTGCCATTGGCTTACATTGGTTATCGGAACAGCCACTTTTGGCCCGATGATACCATTGGCGTAGGTGACACAAGCCCCGGCACGGTGTTGGATATGTGAAAATTGCCAACGGGCGCCTGTCACAATCAGGGGTTAATCGTTGGCCTCGATGTCGGAGGCGCGCAGTCCGCTTGGGTAATACATGACAGACATCGCACTGGCGCTTGTCCGACCTACACACGATTTTAATATCGGCGGTGCCATTGGCGTACATTGGTTATCGGAACAGCCACTTTTGGCCCGATGATACTATTGGCGTAGGTGACACAAGCCCCAGCACGGTGTTGATATGTGCAAATTGCCAACGGGCGCCTGTCACGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [68.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 3528-3320 **** Predicted by CRISPRDetect 2.4 *** >NZ_MUFI01000066.1 Salinivibrio sp. MA440 scaffold66.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 3527 28 100.0 32 ............................ AGCTCTTTGCATACAGCCTTGTAGCGTGTTCG 3467 28 100.0 32 ............................ TGCTAAACAAACAGGAGCAGTGATGCAAGTAG 3407 28 100.0 32 ............................ ACGGGGAGCCAGCAACGGTGTATTGCGGCTGG 3347 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 4 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TGCAAGACTATGCTTACTTCAAACGTTGGAACTACAAATCGCCGCAGCGACTGTATAAAAACCTCGACCGGCGCGCGGCCGCGATTGCCAGCAAAAATGGTTACGATGAGGAGGAAGTAAAGCGTCGTTTGTTGGAAAACATTAAAACGGACGACAAACGCTGGTCGCTGCCTTTTATTCAAGTGACCAGCCTCTCGAGCCAACAGCGAGCAGGGCAGCCAAATACCGAGTTTGCTTTGTATATCGAGCGGGAAACAACCAAACAGCCGCCAAATAACGGCCAATCATTCACCTGTTATGGGCTAAGCCGACGCGAACCCGATCAGCAATCTGCGGTGCCGTGTTTTTGAGGGGGAAGCCCCTCTTTACCCCTTCTTTTTGGGCTCTTTAAAAATAAATAGGAAATACAGTTAGTTACGGCAGGCCATTTTTAACAAGGGTAAAAGGCGATTTTTATCCTAATGGCCTGTTGTTACTGACGATTATTACGTTATTCTATT # Right flank : AGATTAACGACCTGGCCGTCTGTCACGATCGAGGTTAATCGTTGGCCTCGATGTCGGAGGCGCGCAGTCCACTTGGGTAATACATGACAGTCATCGCACTGGCGCATGTCCGACCTACACACCATTTTAATATCGGCGGTACCATTGGCTTACATTGGTTATCGGAACAGCCACTTTTGGCCCGATGATACCATTGGCGTCGATGACACAAGCCCCAGCAAGGTGTTGGATAGGTGCACATTGCCAACGGGCGCCTGTCACGATCGAGGTTAATCGTTAGCCTCAATGTAGGATGGCGCAGTGCAACTGGCGCCAGTTGCACTGCGCGCGGCGCAAATCGCACCAAGTTTGCACGATCGAGTTGGCGCTTATGCCGACCTACGCATAGGCAGTTTAGACACTGAAAATAATTGTTTTTTTGATGTCAGTTCATTGTTAGTGTGTCGTGGCATCGAGGGAGTAGGGGATGGTTCAAGGTCAATAAAAGCGTATGACTAGCA # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [45.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //