Array 1 249-19 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIAZY010000064.1 Bacillus sp. IITD106 64, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================== ================== 248 32 100.0 34 ................................ CCGTTGGTTTAAATCCCAATTCCTCGTATTGTTT 182 32 100.0 34 ................................ AATAAAGCAGAAGAGGTTGCTGGGTGGTTGGTTT 116 32 100.0 34 ................................ TCGACCCAGTAAGCATATATACACCATTTTGTTT 50 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ================================== ================== 4 32 100.0 34 TCCTATACCGAAAACTGAGAGAGTGCCAAAAC # Left flank : TACGTAACAAGCGGCGGGAAAATTACTGGCCAAGTCGATACATTTACTTCTGGCGAAGGATTGGAATATCGTTATATGGGCTCAGACTTAGATACAAGGGAAAAACTAAATGCGTTTCTCGGAGAATCTTACACCACCAGCGCGATTCAATCTTATATAAATCGAGTTAAAATTATTGATCACAACGGAAAACTAGCCCAGCCAAACGCTGACGGAGGTTCTCTCGTTAACCATGAAAAAGCCATTATTATCGGAATGCGGGATAATGGCAATGAAAAAGAATTTGATTTAAAAACACCTCTCGGCTCTAGCTTTTACTATGAATCTATACACGTCGTTTTCACTAAAACAAGCGATGGTTGGAGAATTTCTTCGGATGTGGGAACGTTCTAGAACGGAAAAAAATCGGCTAATCAAATAAAAATGATTGCCGATTTTTCCTGTCTTGAAATTCGAATAGGGACTGATATAATCTTCTTGTTTTTTGTCGGTTCAAGTTC # Right flank : CACAGCAGACCCGAATAAG # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCCTATACCGAAAACTGAGAGAGTGCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.70] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [15.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 56771-57334 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIAZY010000028.1 Bacillus sp. IITD106 28, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 56771 36 100.0 30 .................................... TCTCTCATCTCTCTACCTCCTCAAACTTTC 56837 36 100.0 30 .................................... TTGAACGCGGATTTAAAATTATGGATTTCT 56903 36 100.0 30 .................................... GTCAGGGAATGGCTAAAGGCAATGATGCAC 56969 36 100.0 30 .................................... CGTCCCAGGCGCTTATAGATGAAGTTCAGC 57035 36 100.0 30 .................................... ATTAATGGTACCTGCTGTGATTTTATCACC 57101 36 100.0 30 .................................... ACATTTCCAAACCGAACTTATTGATTTCGT 57167 36 100.0 30 .................................... TTTGTGGCAGGCTTAGACTTATAAGTGCCA 57233 36 100.0 30 .................................... CTAATTCCGTACATACCTTATCGAATTGAT 57299 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 9 36 100.0 30 GTTTTGGCACTCTCTCAGTTTTCGGTATAGGAAAAC # Left flank : TATGCGGATAGACTGAATGATAAAAAAAGGTTGTTCATCATTGAATTGCCTGAATTGTATTCCACGGAAAAGCAAATTAGCGATTATTTTCACATGGTTAATCAATTATCGAGAAATGGAATGCGGTTTATCATTGTAACAAATTCTGAGCAAATTAAAGGTAATATTAACTATATTTTTGACGAAGTGATAATAAATGAAGCTCTCATTGAAAATATTAAAAGGAAAGTATTAACCGAAATTCCATTTTATTGTGATGATGAATTATTTAATCATGCAAAGGAAGTTTTAATTAGGACTGTGGATAACTACAACGAAAACTCTTCTAAAGAGACAAACAGTCATCAACAAACTGATTCTATTCAGGTTCTGTTATACGTTATTTCATATCATCTTAATATGGGTTTAAACCTTGATTTAACTGATATTCCAACTAACTTGTATGCATTTTTAAAAACATATTCGTAATGAATTTTTCTATATGGTATAATTTTGTTGAG # Right flank : CTTCAACATCTGCTTATTCG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTGGCACTCTCTCAGTTTTCGGTATAGGAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.70] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [78.3-20.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 1 18573-16888 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIAZY010000034.1 Bacillus sp. IITD106 34, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 18572 32 100.0 34 ................................ CTGTTGGTCTTTGACGTGTTGACCGCGCTTGTTT 18506 32 100.0 35 ................................ CCATTGAAGGGCGTGCAGCTATGATGGTCACTTCC 18439 32 100.0 33 ................................ ACATATTCCATAATGATTTTAATGAATTGTGAA 18374 32 100.0 34 ................................ ATTACCTGATGGCTCGTTGCCCTCGCCCTGGTCT 18308 32 100.0 36 ................................ TGCAACGCCCCATTCACCATCACAAACGATTCTAGC 18240 32 100.0 34 ................................ GCTAACGCCGTCTGGATTGATGTATGGTCATCTG 18174 32 100.0 34 ................................ CTTTACTCTTTTTTATCCCTGCTCTTTACTCCCT 18108 32 100.0 34 ................................ TCCTTCAAAATATTAAACTCCCTTTCCAAATTAC 18042 32 100.0 37 ................................ TTCGTATGCTATGTTGATACAATCCTCAACATCCAAC 17973 32 100.0 33 ................................ AAGACTCCAGAAGCTGATTTATGGACATACAGT 17908 32 100.0 37 ................................ TAACGAATTGTAAAGGTCTGACATGTTGCTGGAGTAC 17839 32 100.0 38 ................................ CAACCGTAATGAGTGGTAACTAGTGTTTGGTTAACATA 17769 32 100.0 33 ................................ CAACCGCGGAAGTTCGCTACGGCAAGAATCTCG 17704 32 100.0 35 ................................ TTTTGCTCCATTTTAGTTGTAACAGACTTTATGAC 17637 32 100.0 33 ................................ TAGCCAAGAAAATGGATATTGCGGATTTCTTAA 17572 32 100.0 32 ................................ CTGCCAAGGAGCTTCGTACATCCTTGTTAGTG 17508 32 100.0 32 ................................ TAGTACATCCAATGTGTAATTAAATGGTCGAT 17444 32 100.0 34 ................................ TGGCAATGTTACGGTATATTTATTCGCTGGTAAT 17378 32 100.0 34 ................................ AACAATCGTTTTTCGGCGGCTGACTTCTTTTCTT 17312 32 100.0 33 ................................ CAGCAATTAGAGGAAGAAGCACCGCAAATATTA 17247 32 100.0 34 ................................ CCATGAAAACCCTAGCATTTCACCAAGCCCCAAA 17181 32 96.9 33 ............A................... CATATCAAAAAATATTGAATGATCTTGCTCCAA 17116 32 96.9 34 ............A................... AAGAAAAATTAGTCTCAGTTAGAAGAGAACTATC 17050 32 96.9 35 ............A................... AGGATATCGCTCACAGGCAACACAAAAAAGTCTAT 16983 32 93.8 33 ............A...T............... TATCAAACCGATTCCAAGTCCTGTTGAGTCAAC 16918 31 78.1 0 A...........A..A-..T...A...A.... | ========== ====== ====== ====== ================================ ====================================== ================== 26 32 98.6 34 GTCGCATCCTTCGTGGGTGCGTGGATTGAAAT # Left flank : TAGATGAATATCCACCTTTCTTATGGAAGTAGGTGTATTTTTGCTAATATTGATAACGTATGATGTAAGTACAACAAGTGCTGCTGGCAGAAAACGTTTGAGAAAAGTTTCAAAAGCGTGTCAGAACTATGGTCAACGGGTGCAAAACTCAGTGTTTGAATGTGTCGTAGATGCCACCCAGTTTGCAACTTTAAAAATAGAACTTTCAAATATTATTGACGAAAAACAGGACAGTCTCAGATTTTATCAATTAGGTAATAATTATAAGACGAAGGTGGAACACATCGGAGTAAAAGGATCAATTGATATCGAAGGTCCTTTAATTTATTGAGTGCGAATCTAAAGTGCACATAGTATACTTGGGGGATTCGCACCTCAAAATTATTATTAATTGAAGTAAAACTATCGTTCTTTAAACTGAATTCCCTAATTTCATAAGGGAAATAGTGGTTTTTGACTAAATTCCTTGTTTTATCAGGTCTATTTGATCAAAAATCGCT # Right flank : TATAAAGCTGATACTTAAAGAAATTTAGGAAGGAAGTATGAAACATGTGAAACCTTATATGTTAAACTAACTTGAAAGCAGGGGTATTAATGGGAAAAGTAATCGGAATTGAACCCAATACTCAGAATCCAGAAAAAGTAGCAGACTTTTATTCCAATTTGTTCGGTTGGAAAATGAACCTAATTGGGATTATCGAGAAGCATTCACGGGAAATGTAATAGGTATAAACGGAGAATTGCGAAAGGTCCGCACGATTACCCACATGGTACGAGAATCCAAATCGAAGTAGCTTCGATAGATGATACTATTTCCGAATCCTTGAATCATGGTGCTTTGATTGTGCGGGATAAAAGTTTGATGATTTTTATCTAGCGTATCTGGTCGACCCTACAGAACTCGGAATTGGTTTAATTCAATACAAGGAGTAGAATCTATTTAGATAGCTTAGGAGGCAATAATAAGAATTTTTGAATTTTCACTAGAACATCAAAAGCAGATCT # Questionable array : NO Score: 9.19 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTTCGTGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [10,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-4.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //