Array 1 4736-5160 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFIWI010000070.1 Lactobacillus helveticus strain 314 NODE_34_length_21820_cov_56.140689, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 4736 30 100.0 35 .............................. CAATAAAGTCAAAGCTGTAAAATTGGTTATCCAAT 4801 30 100.0 36 .............................. ACATCAACAACGTTTGATAAATCATCTTTTAATAAA 4867 30 100.0 36 .............................. CGCCAATCTTGCTGTTTTTATAATCAGATTGATAGA 4933 30 100.0 35 .............................. AGAATTAAATAATCTAGATTATGCCGTAGCTCTCG 4998 30 100.0 36 .............................. CTTGGATTGAAGAAAATAATATGAAGCTTCAATGGT 5064 30 100.0 37 .............................. ACAAAAGAAATGTATAAGTGGCTATCAAACTTCTTTG 5131 30 96.7 0 ....................G......... | ========== ====== ====== ====== ============================== ===================================== ================== 7 30 99.5 36 GTTTTTATCTAACTTAAGAGAAATGTAAAT # Left flank : GTTTCCAAATCTAGGTCGACGAGAAGATTTGGTAAATTTTGAAGAAGTAAAAATCGTTGATGTAGAAAAAAAGGATGAAGACTTAACTGTAAATCATGGTGCGTATATACCAGTTGAAATGTCTGAAAATATCGGTCTTGAAAATGAAGGTATTGGATATAAAGGAACGCATTATTACTTAAATAAGGACTATAAACTGGTAACGATAAAAAAAGGTCAGACACAACGTCGATGGAATAAAGTTGAAGTTATATATGCTTCTGGGTTTACGGTTTATAAGAGTTACGTTGATGAAGATAATAATGTAGTGTTCTTAGTTTAAAATCTGTCGATGTCCAATAAGCAGTTTTTACCAGTAGATCGACAGATGTGATAAAGCCTTATGTAATAGTTTTTCTAGAGATTCCAATTAATTTAGACTCAAAATGATGATATGTTTTGGGAGGTCGATAGAAATCATATTACAAAGCATTGATGTATAAGACTTGGCAAGTGGAACT # Right flank : TCGCTCTCTATAGGGGGGGTTGTACATATCCTTTATTTAACTTACGAGAATATACGATATTAACCATAAAGATAGAAAGTGTGAAAGGATGAATGAATATTTAGCTAAATCTTTAGACCAATCTGAAGGAAATCATTGTGAGACGATCGTTGAACATACTAATAATTTGTTAAAGCAATATAGTTTATTAAAGCAAGCTTATCCAGATATATTTCAAAATTTTTGGCTTAGTCAAGATCGATTTAACGATATGACAAAACAGGTAGATATTCGTAGTAAAGACGATTGGCGGCTTTTAGAAATTGCTTGTAGCTATCACGACTTAGGAAAAATGAACCTACGCTTTCAGAAAAAGGTAAAAGCAGGGCAGAGCTTTTGTAAAGGTGAAATTCCGCATGCATTGTTAAGTATTACGATGCTTCCAATTGATGAATTACAGAAGCATTATACTAAAGATCAAATCATAGCATTAATTTTTGCAATAAAGTGGCACCATGAAC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAACTTAAGAGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 2 9655-11081 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFIWI010000070.1 Lactobacillus helveticus strain 314 NODE_34_length_21820_cov_56.140689, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 9655 30 100.0 35 .............................. TCCGTTAACTTCCAATCATCGGTCTCTTGTGCTTG 9720 18 50.0 0 ...............TTT------------ - Deletion [9726] 9734 29 96.7 35 -............................. CAGTCCTGCATTAATTAAAGCGACTTTATACTTTT 9799 30 100.0 35 .............................. ACTTTCATGCCATGAGTGGCAAGCCCAGTCTTTCT 9864 30 96.7 37 .G............................ TTGTCATGGATTAAATGTTTACGCAGTTTTGGAATTA 9931 30 100.0 36 .............................. GGCGTTAACCTTAACTATAAAACAGGTACAAGCCGC 9997 30 100.0 36 .............................. TGAGAAATGGAATTGGTTGAAACAAAGGCTACTTGT 10063 30 100.0 35 .............................. TTATATGATGCACAGGTCTTGGATAAGTTTACGAA 10128 30 100.0 35 .............................. TAATCAAGGTGCTGATTATATAAACTTCTTAGGTA 10193 30 100.0 35 .............................. GTATTTGTTCAAGTTCATATTAAAACGGATAGTAG 10258 30 100.0 36 .............................. TGGATCAACCATGCTACTATCGACCAACTGCGGGTC 10324 30 100.0 36 .............................. AAGTCAGCTTCAAGTCTCTTTTGAATAGATGGCATG 10390 30 100.0 38 .............................. AACACCATACCAAGAATTCGAAGCACCAAACCAGCCAG 10458 30 100.0 36 .............................. ATAGCAGAGGAAAACAAGCTTATAGGTAAAATTAGT 10524 30 100.0 35 .............................. ATAAAAATGTTATTGTGAGTTTGTGCGCCATCTGG 10589 30 100.0 36 .............................. CCGCAATAGCCAAACACACCAACAACAAAAAGCAAA 10655 30 100.0 36 .............................. GAATAAATTAGAGGCTTGTATCCTGCTTCTTTGATA 10721 30 100.0 35 .............................. TCAATTGCTAATCCCATAATTTTACCTCCTACCAG 10786 30 100.0 36 .............................. TTTTGAATATTAGCAATGTGTGTAGAGCTTAAAGCC 10852 30 100.0 36 .............................. GAAACTACTGAGTTGCCATCGCCAGGCCCCCAATCA 10918 30 90.0 38 ............T.............G..T TTTTGAAAGTTTAATCTAAAAGTTTTAGTAGTTGGTAG 10986 30 83.3 36 ..C.........TC....G..........T AAAGCCGAATTTTACACCAACTTTACTAAATATGCT 11052 30 76.7 0 .A......C...........G..AA...TT | ========== ====== ====== ====== ============================== ====================================== ================== 23 30 95.4 34 GTTTTTATTTAACTTAAGAGAAATGTAAAG # Left flank : CCTATGAGCCTTATGTTATGGGATGGTAATAGATATGTATGTGATTCTGGTTTACGATATCGTAATGGATAAACAAGGTGCTAAAGTAAGTAGACATGTTTTCAAAATATGTAAAAAGTATTTAACTCATGTTCAAAATTCAGTATTCGAAGGTGAACTAACCAAGTCCCAGCTTGAAAGCTTGAAGAATGAGTTGGATAGATGGATTCGACAGAACGTTGATTCAGTGATTATATTCAAAAATAGAAATAAAGATTGGCTTGATAAAGAATTTATGGGTCAGGATTTAACTGATTTAACGTCGGATATATTCTAAAGAAGAATCTGTCGATGTAAGATACGAAGAAAATTCTGGGAGATCGACAGATTTGCAAAATGCCGGTACAATGATATTTGTGCGATTTGTCTAATGATTTTAGTGATTTTTGGATGCGTTTTTGGTTAGGTCGACAGATAGGGCCGTTGAATCTATTGATACAGTAGGACTGGTAGTTGCAACT # Right flank : TGTGTGATTAAAGTCAATTAAATATAAAACATAAAGATTTATATTTAATTTACGGGAAGGAAACTACAATCAAACATCCTACTAAAATCCTACCAATTAAACTGGTAAAATAGATAAGTAAGTATAGAGAACAATTTTTATAAAAGGGGAATAAAATGGCAGATAAAAAATTACTTCTAATCGATGGTAACTCTGTAGCTTTCAGAGCCTTTTACGCTCTTTATCGTCAACTAGAATCTTTCAAGAGTCCGGACGGCCTGCACACTAATGCCATTTACGCTTTTAAGAACATGCTCGATGTCCTTTTAAAAGACGTTGATCCAACCCACGTATTGGTAGCTTTTGATGCAGGAAAAGTCACTTTTAGAACAAAAATGTATGGTGAATACAAAGGTGGACGTGCGAAAACTCCAGAAGAGTTGCTCGAACAAATGCCTTACATTCAAGAAATGCTGCATGACTTGGGTATTAAAACTTATGAATTGAAGAATTATGAAGCA # Questionable array : NO Score: 2.90 # Score Detail : 1:0, 2:0, 3:0, 4:0.77, 5:0, 6:0.25, 7:-0.12, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATTTAACTTAAGAGAAATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [6-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 47026-46875 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFIWI010000054.1 Lactobacillus helveticus strain 314 NODE_5_length_59120_cov_49.513473, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 47025 29 96.6 32 ............................T CCTAGTCATTTGCAATGTGTTTATCATAAGGA 46964 29 100.0 32 ............................. ATGAAAAAAGAACGTTTAATCACTAGTGAAGT 46903 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 3 29 98.9 32 GTATTCTCCACGTATGTGGAGGTGATCCC # Left flank : TTGCTAGTTAAGTAGTGATATCCCTTTTTAGCATGATGATCAACTCGAGTTAAAGCAGCATCCTTATAGATAGTAGCATTGTGCTTTAAGCGAATGATCTTAGGATTAGATGAGAGATAATCGCTCTTATTGAAAGCTGGAGCTTTATTTTCTGTAGTAGAACTTTGAGACTGATTAGAGTTCTGTACTACTTGAGTATTTGATTGAGCATCGCTAACAGCATCGGCTTGAACGTGATTAGTAGAACAATTCCTGCACCAAGCAAAACTGCCACGATAGCTGTGTTCCACTTTGTCTTTTTCAACATATATTTTCTCCTCCATAATTTTTGGGAATTCATTGGTTATTTTACTCGTGTTTTAGAAGTTTTTAAATTAGGAAGGAAGAATTTAAAATGAGTAGAAGATATAAATAAAAAAGAATAAAATAAATAGGATGAAACTGAATAAATTTTAGTTTTCATAAAATTGAAATGGCTCAATGATAAGGGATCTTTTAGT # Right flank : TTGTTCTAAAAAGGATTTAGCAAAATTGTATTTCGATAGTATCAATACAAATCATTTTGCAGATTATGAACGAATTAGGTGCATAAGGCATTTAAATCTCTATAGTCTAATTACTTTAGAGCAAAATAAAGACCCGCTAAACAATAGCGAGCCAGTGTAAGGAATTGGTAAAGAAGAGGGGGAGGTAAACATCACCCTCTGTTTTTCTATGATACTACGAAGGTATTACTATGGCAAGATCTGAAGCCTTAAAAAGGGCACAGAAGAAATATGCAGCAAAAAAACCTATTGCTAGGAAAAAAGCAAATACGAAATCGGCTGGCAAAAGATTCATTTTGAAGTTTGCAACTAAAAAAGATTTACTAGAATATCAAGAACTGATAGCAAAGCGATTAAAAGAGTTAAAGTCATGAAGGTATTCTCCACGTATGTGGAGGTGATCCTTAATAATCCGTTGTCGTTCATTATTTACTAAAGTATTCTCCACGTATGTGGAGGTA # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTATGTGGAGGTGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [75.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //