Array 1 38-797 **** Predicted by CRISPRDetect 2.4 *** >NZ_MADP01000268.1 Xanthomonas translucens pv. poae strain Utah5-P1 contig_268, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 38 31 100.0 36 ............................... CTGAAGTCCGGCTAGGTTGCTGAAGTCCGGCTAGGT 105 31 100.0 35 ............................... TTCCAGAACCGCTCCAGTCCCTTGATCCACTTTAG 171 31 96.8 35 ..........T.................... ACGCGCACGCACGCACAGAATAACGTGCATGTTGC 237 31 100.0 36 ............................... AGCCTGCCGCAAACGTACACCGACGCGCCCTTCCGC 304 31 96.8 36 ....G.......................... TTGGCCTGGCCGACCTGGTACGAAACCCACGTGGCG 371 31 96.8 34 .................C............. TTGAAGGACAGGCGGGGCGCCGAGGCGTAGACAT 436 31 93.5 35 ............T......T........... ATGCAGAACTAAATGGCTGAGGTCGATTTCTCGTT 502 31 93.5 34 .............A......C.......... CTGGTGCCAGTAGCCACGTCATTGAAGCAACGAC 567 31 83.9 35 .CT.......A....A.A............. CTGTACTGGATGGGCCGGCGCGTGTGCGAAATCGC 633 31 83.9 37 .....A......A....AT.......T.... CTTAAACTCGAGTTGCACGCTGGCACATGGCATCATG 701 31 96.8 34 ...A........................... AAGAACACCAAGACCTTCGACTGGGACGGCGACA 766 31 77.4 0 A............AAC...AC....G..... | C [790] ========== ====== ====== ====== =============================== ===================================== ================== 12 31 93.3 35 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : AGCGGTGGATGGGCTTTGGTATTTCAGCAGCCTGCTAG # Right flank : CCGCCTTTACGACGATGTTCTATCGCTTTTACCCACAAAAAAAGGCGCAGTCTCGCGACTGCGCCCAGCGTGCCGCGCCGGCCGGGAGAGAGTCGGCTGGCGCGATCCGTGACTGCGGTGTGCCTAGCGGGACGCGATGCGCATCACTTGACTTCGAATTCCTGCGCCGTTCCGGCCGGCTGGCCGTTCACGGTGACTTCGGCCTTGTACTTGCCGGCCGGCCAGCCCTTGGCGTTGGTGAAGGAGATATTGGTGGTTTCCGCACCGGCCGTGGTCAGCGTCGCGTTTTGCTCGCCGGCGGTCTGGCCGTCCTGGAACAGCAGCTTGGCGCCGACAGCGGTGTTGGTGGAGGAACCCTCGGTCTTCACCGAGACGATGATGGTGTCCTTGCTGCTCAGCGTGCTCAGCGGCGCCACCGTCTTGTCGGCGCCCGCACTGTTGCCCACGGTCACCGAGGCGACCGTCACCGTGCCGGCAGTGGCCGCGGCCGGCGCTGTCTC # Questionable array : NO Score: 8.33 # Score Detail : 1:0, 2:3, 3:3, 4:0.66, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.30,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-21] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 1848-1485 **** Predicted by CRISPRDetect 2.4 *** >NZ_MADP01000017.1 Xanthomonas translucens pv. poae strain Utah5-P1 contig_17, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 1847 31 100.0 37 ............................... CGACCTGGCGGGTCGAGGACGTGGTGCCGCCCAGGCC 1779 31 100.0 37 ............................... CAGTCCGATCTGGCGACAGCGAGGACGGGCAAGAAGG 1711 31 100.0 34 ............................... AGCTACGTTGCGCTCGGGCGCTCGGGCACCGGTC 1646 31 100.0 34 ............................... ATCCGTGTATTGCCGGCCGATCATCTTGATGGAA 1581 31 100.0 35 ............................... CAGCTCCATGGCCCGGTCGCCCACCGGGTAGGAAC 1515 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ===================================== ================== 6 31 100.0 36 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : ATTATCCGCGGTGTAGCATCCTTGTCGCGTCCTCACGGGCGCGTGGATTGAAACTTGCGTCGGCGCGGCGAGCTTTGCGGCTTGGTCGGGTCGCGTCCTCACGGGCGCGTGGATTGAAACAATTAGCGGCATTTCTTTGCAATCATCGAGCGCAGTCGCGTCCTCACGGGCGCGTGGATTGAAACTGTACCTCACTTTGGCACATGCGACAGACCCGTCGTCGCGTCCTCACGGGCGCGTGGATTGAAACGCGCTTGAATGTCGATGGATGCCAAGGCCACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : GAAGATGCGGCCATCGTGAACGCTCGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCGGCGGTCGCGTCCTCACGGGCGCGTGGATTGAAACCAATTCATCCGGCGTCAAGTGCCATGTTTCGCCAGGTCGCGTCCTCACGGGCGCGTGGATTGAAACTTCAGTTCGATGGCGGCCCAGTCCGCCGGGTTCAGCGTCGCGTCCTCACGGGCGCGTGGATTGAAACGCCATTGAACTGCAGCGCGATTTCGTCGCCCTTCTGTCGCGTCCTCACGGGCGCGTGGATTGAAACCTGTAGATGATCCTACGTTTTGGAAGAATTCGATGTCGCGTCCTCACGGGCGCGTGGATTGAAACCAGACCAGATCGACG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [16.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 4302-2098 **** Predicted by CRISPRDetect 2.4 *** >NZ_MADP01000017.1 Xanthomonas translucens pv. poae strain Utah5-P1 contig_17, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ====================================== ================== 4301 31 100.0 34 ............................... TCGTGTTTGGGTTGGTGTGGGTAAAGATTAGCGC 4236 31 100.0 34 ............................... TTCCACTTGCCGTGCTCCGGGTGGGTGTCGTCCT 4171 31 100.0 36 ............................... ATGGTTAATTTATCTTCGCAAATTTCCATCCTTGCC 4104 31 100.0 34 ............................... TTGAGGTTGCCACCGTAGCGCGGTGCGGTCTCAT 4039 31 100.0 33 ............................... CTGCGAGGTGAACCCGAACACGCGGCGCGACTC 3975 31 100.0 33 ............................... AGCTACAAGGCGCGGTGCGGGCGGCAGAACCGG 3911 31 100.0 36 ............................... ACGGCGAATTGGCTGATGATCTGCTGACCGGCGACA 3844 31 100.0 36 ............................... CGTTGTGGTCGCCGCTAGCAGCGTACGCCCCTGCGG 3777 31 100.0 38 ............................... CCGCTGCTCGTCGGTCAGGAAGGCAGACACGGAGTAAT 3708 31 100.0 35 ............................... CTGACATGCGCGGCGAGTTTATCCGCGGGTTGGAT 3642 31 100.0 35 ............................... AGACAGCGAGCACCAGCGTTATCGGCATCATCGGC 3576 31 96.8 36 ....................C.......... GACCACTCGGCGAAGCGGGTGACGATGGGGTTTACG 3509 31 100.0 34 ............................... CCTGGAAGACGGCGATGGCCTGATCCTTCCACTC 3444 31 100.0 35 ............................... TCGGCTTTCGCGACCTTCGCGGCCGCCTCGTCCTG 3378 31 100.0 34 ............................... GGCTACTACGCGCCGGCCGGTTCGCGGTTCACGG 3313 31 100.0 36 ............................... TGGATTGCGCCGGTGGAGATCGGCACGGCCTGGTAG 3246 31 100.0 34 ............................... CTGGTCGAGCGCGACGACGAATACAACATCCTCG 3181 31 100.0 36 ............................... CATGCATGCGAATACCCGCTGGACGTGTTCGGCTAC 3114 31 100.0 34 ............................... TTGATCGCCATGTAGGCCATCAGCGCGGCAATCG 3049 31 100.0 35 ............................... CACGTCGGTGCGGTAGCGCCGGCCGGCGGCAGCGA 2983 31 100.0 34 ............................... GTCATCGTTGAAACGCAACTTCACTTCGTTGTCG 2918 31 100.0 36 ............................... ACGGCATTCATGCTGGCGTCGTCTGCGCACCAGACA 2851 31 100.0 35 ............................... CGCAAGGCAGACATCGCTGCTCTGAAGGGATTCAT 2785 31 100.0 34 ............................... GCCTGGTCCGGCTCGCCAACGACAATGCGTGGCC 2720 31 100.0 35 ............................... CCGACAACAACACGCCGAACGATGCATTCGACATT 2654 31 100.0 35 ............................... AACGCGCTCACCGGACACAAGTTGAGTGAGCGCGA 2588 31 100.0 36 ............................... ATCCGCCGCGGTACCGGCACCGTCGGCGATGTGGCC 2521 31 100.0 35 ............................... TGCCGACGCAGCAAGGGTCTTCATCACCCCGCTGG 2455 31 100.0 36 ............................... GATTCCCTGTCGGTCCACCAGTTAGACCCGTTGCGG 2388 31 100.0 33 ............................... ATCGTGCCGGATTATCCGCGGTGTAGCATCCTT 2324 31 100.0 35 ............................... TTGCGTCGGCGCGGCGAGCTTTGCGGCTTGGTCGG 2258 31 100.0 34 ............................... AATTAGCGGCATTTCTTTGCAATCATCGAGCGCA 2193 31 100.0 34 ............................... TGTACCTCACTTTGGCACATGCGACAGACCCGTC 2128 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ====================================== ================== 34 31 99.9 35 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : TGCTCGCAGTTCCTCGTCGCGTCCTCACGGGCGCGTGGATTGAAACACGTTGTTGCAGGGGCAGTGGCGGTGTGGCCCCTGTCGCGTCCTCACGGGCGCGTGGATTGAAACAGGCGATGAGGGTAGAGTAGGCTTCGGCGACCGTGTCGCGTCCTCACGGGCGCGTGGATTGAAACAGGTCAGCCAGGACCAGGGGGAGCTGTCCGGCGTCGTCGCGTCCTCACGGGCGCGTGGATTGAAACCGGTGCGCTCTCCGGCGTGGCCTCTTCCGCCGCCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : GCGCTTGAATGTCGATGGATGCCAAGGCCACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCGCGTCCTCACGGGCGCGTGGATTGAAACCGACCTGGCGGGTCGAGGACGTGGTGCCGCCCAGGCCGTCGCGTCCTCACGGGCGCGTGGATTGAAACCAGTCCGATCTGGCGACAGCGAGGACGGGCAAGAAGGGTCGCGTCCTCACGGGCGCGTGGATTGAAACAGCTACGTTGCGCTCGGGCGCTCGGGCACCGGTCGTCGCGTCCTCACGGGCGCGTGGATTGAAACATCCGTGTATTGCCGGCC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [21.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 6983-4560 **** Predicted by CRISPRDetect 2.4 *** >NZ_MADP01000017.1 Xanthomonas translucens pv. poae strain Utah5-P1 contig_17, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ============================================================= ================== 6982 31 100.0 35 ............................... CGCCGCTCTGGATCGGCAGAGCAAGTACATTACGG 6916 31 100.0 36 ............................... CTCTTGGTTGTGGATGTAGGGAAACAGTAACACCGC 6849 31 100.0 35 ............................... CGCACGTCGCCGTGGCAGTTGCCATATCCACGGTG 6783 31 100.0 34 ............................... TTCAAAGATCATATCTATCTGCATCTGCCCATTG 6718 31 100.0 34 ............................... CCGCAGCCTCCGTGCCTGCTCCGCGTACACATCG 6653 31 100.0 34 ............................... GTCTCCGTCAGTGTGGGCTTTCTTAGTTTTGGCC 6588 31 100.0 35 ............................... CCCGTTGTGCAGGTGTACTGGGAACAGAGCGCACG 6522 31 100.0 34 ............................... ATCAACGGGATGCTCCAAGCCGTGTACTACTCCG 6457 31 100.0 35 ............................... CCGTTGACGCACGGATGCCCCGCCCGCGTGGGACG 6391 31 100.0 34 ............................... AGCGCCCTAGAGCCGCAGCTATTCCACCAGATTT 6326 31 100.0 35 ............................... CTCGTGGACGCCGATCGCCAGCAAGGCATTACGCA 6260 31 100.0 35 ............................... CTTTTCGGCCGCACGATGCTGCCAACCTGCAATAG 6194 31 100.0 34 ............................... AGTTTATTGGCGTAGATCCACCTGGGGAACTGGT 6129 31 100.0 35 ............................... CTGGGCACGAGCTATTTCCTTTTCGTCATCGGCGC 6063 31 100.0 36 ............................... AGGCCGTGGCCAAGGCAATCGGCACGCACGTGCAGG 5996 31 100.0 34 ............................... TGGCACCGCCAAGATCGATCCCCTGATTGCGCTC 5931 31 100.0 34 ............................... TTCGCCTGGCTCTGGTCGATGCCCTTCTCGGCGA 5866 31 100.0 36 ............................... CTGGTCGCTGTCGTAGTCGCTGCGACGCACTACCAG 5799 31 100.0 34 ............................... TGGTCCACCGACACGGACCTAGGACCAACAGCAA 5734 31 100.0 61 ............................... AGGTCCACCTGGTGCCCCTGGGCTTTGCGCACCTNNNNNNNNNNNNNNNNNNNNNNNNNNN 5642 31 54.8 36 NNNNNNNNNNNNNN................. ACCATCATTGGTGAGTCCACCCTGGTCCGGGCGCAG 5575 31 100.0 36 ............................... TAGCATGGCCGCCTCAAGCACCGCGGCGGCCTCCAA 5508 31 100.0 34 ............................... ATGTCGTAGTCCTCGTGGTTGGTGGATGTGCGAT 5443 31 100.0 35 ............................... TGGTTACAACTACTGGCTGGCGCAAGACCGGGATC 5377 31 100.0 35 ............................... CCGACCGGTAAGGCCGGCACGGTCGCGGCGGTTAC 5311 31 100.0 35 ............................... ATGTCTGGTCTCGTTGTTTGGTTGGTGTGGGTATA 5245 31 100.0 34 ............................... TTGAACGCAACGATCTGCCCATTACGCAGCACGT 5180 31 100.0 34 ............................... CCGAGCGGCTGCGGATAGAGGACGACGGCGGCGT 5115 31 100.0 36 ............................... AGCTACAAGGCGCGGCGCTGGCGGCAGAGCCGGCGT 5048 31 100.0 34 ............................... GAGGTAACCGGCCCATACGACAAGGCTAGGATTT 4983 31 100.0 34 ............................... GTGCAGCAATCCGCGCCGAGGGCGTCCCGTGCCG 4918 31 100.0 35 ............................... CGGATGACCGCCACATTGCACGCCGCCACCTGCGG 4852 31 100.0 35 ............................... TTCCTGCGGCTTGGGATTTCTGCTCGCAGTTCCTC 4786 31 100.0 34 ............................... ACGTTGTTGCAGGGGCAGTGGCGGTGTGGCCCCT 4721 31 100.0 34 ............................... AGGCGATGAGGGTAGAGTAGGCTTCGGCGACCGT 4656 31 100.0 35 ............................... AGGTCAGCCAGGACCAGGGGGAGCTGTCCGGCGTC 4590 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ============================================================= ================== 37 31 98.8 35 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCGCGTCCTCACGGGCGCGTGGATTGAAACCGCCGCTACCGGGCCGCAGGGTGCGATTTCTACGGGTCGCGTCCTCACGGGCGCGTGGATTGAAACTCCCGTGCATTGCGCCGCCGAAGGACTGGGTGCGGTCGCGTCCTCACGGGCGCGTGGATTGAAACATCCTTAACGGTGTGGAGTATACGGCGTTCCCGGTCGCGTCCTCACGGGCGCGTGGATTGAAACGTGTACGGCGACACTGCTCCGGCTGCTGCTGCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : CGGTGCGCTCTCCGGCGTGGCCTCTTCCGCCGCCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCGCGTCCTCACGGGCGCGTGGATTGAAACTCGTGTTTGGGTTGGTGTGGGTAAAGATTAGCGCGTCGCGTCCTCACGGGCGCGTGGATTGAAACTTCCACTTGCCGTGCTCCGGGTGGGTGTCGTCCTGTCGCGTCCTCACGGGCGCGTGGATTGAAACATGGTTAATTTATCTTCGCAAATTTCCATCCTTGCCGTCGCGTCCTCACGGGCGCGTGGATTGAAACTTGAGGTTGCCACC # Questionable array : NO Score: 9.16 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:-0.03, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [11.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 7334-7174 **** Predicted by CRISPRDetect 2.4 *** >NZ_MADP01000017.1 Xanthomonas translucens pv. poae strain Utah5-P1 contig_17, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ================================== ================== 7333 31 100.0 34 ............................... TCCCGTGCATTGCGCCGCCGAAGGACTGGGTGCG 7268 31 100.0 33 ............................... ATCCTTAACGGTGTGGAGTATACGGCGTTCCCG 7204 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ================================== ================== 3 31 100.0 34 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : TAACGAGCGGCGTTTGTCGCGTCCTCACGGGCGCGTGGATTGAAACCGGTCCGGTTGCGCACGTTGGCTTTTGCCTCATCGTCGCGTCCTCACGGGCGCGTGGATTGAAACATGCCCAACTCGAGATTGGCGAACTTCGCGAGGAGTCGCGTCCTCACGGGCGCGTGGATTGAAACTGGAGGTCCGACCCTTGCGGAGACACGCCGCTCGTGTCGCGTCCTCACGGGCGCGTGGATTGAAACTTATCGAATAGCGGAAACCCGTCGCGGCAATACCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCGCGTCCTCACGGGCGCGTGGATTGAAACCGCCGCTACCGGGCCGCAGGGTGCGATTTCTACGG # Right flank : GTGTACGGCGACACTGCTCCGGCTGCTGCTGCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCGCGTCCTCACGGGCGCGTGGATTGAAACCGCCGCTCTGGATCGGCAGAGCAAGTACATTACGGGTCGCGTCCTCACGGGCGCGTGGATTGAAACCTCTTGGTTGTGGATGTAGGGAAACAGTAACACCGCGTCGCGTCCTCACGGGCGCGTGGATTGAAACCGCACGTCGCCGTGGCAGTTGCCATATCCACGGTGGTCGCGTCCTCACGGGCGCGTGGATTGAAACTTCAAAGATCATATCTATCTGCATCTGCCCATTGGTCGCGTCCTCACGGGCGCGTGGATTGAAACCCGCAGCCTCCGTG # Questionable array : NO Score: 8.67 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.40,-10.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [18.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,9.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 5 12513-9449 **** Predicted by CRISPRDetect 2.4 *** >NZ_MADP01000017.1 Xanthomonas translucens pv. poae strain Utah5-P1 contig_17, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 12512 31 100.0 35 ............................... CCTTGCTCACCGAAATAAAACTTCGGCGAACGTGC 12446 31 100.0 35 ............................... GGCATCCTGGGCATGCGACCCGACGCCGGCAAGAC 12380 31 100.0 36 ............................... CTCCAGGCGCTGGCACGGCGAGCGGACATCCACAAG 12313 31 100.0 34 ............................... CCCGACCGCGACAGCGCGCGGCGATTTGCAGCGT 12248 31 100.0 35 ............................... TTGTGCCTTTTTCTGAAGGCGTTCAGCCGATCAGG 12182 31 100.0 35 ............................... GACAACGTGCTCGCCCAGCAGTGGGACGAAGACAC 12116 31 100.0 35 ............................... CTGTGCTCGGAGTCCACCTACTGGCTGCCGCAACT 12050 31 100.0 34 ............................... ATCATCATGCTGGGCCACGACCCGGATCCGGCGT 11985 31 100.0 36 ............................... AGGGCGACCGGAAGGAAAAGAGCAGGGTGCGCATCG 11918 31 100.0 35 ............................... ATGTTGCCATTGTTGACCATGCTCTGGTAATAATT 11852 31 100.0 36 ............................... CCGATACTTCTGCCATCGATATCCGTAGCCTCTAGC 11785 31 100.0 35 ............................... CGCCATGGGCAGCGCGTTTGGGGGCATGGAAGACG 11719 31 100.0 36 ............................... CATGATGGAAGAGCGAAACCTAGGCGCAGGCTTCGC 11652 31 100.0 35 ............................... CTCGGCATCGCCAAATCTCCAGAACATCAGTAAGG 11586 31 100.0 35 ............................... GTTTCCGACGCGCTTGATAAAATTAAGGCGTGGAA 11520 31 100.0 36 ............................... GCCTATAACTACTGGCTTGCGCAGGACCGCGACCAG 11453 31 100.0 35 ............................... CCGGAGGTGCACGAGGCAGCGCTGGAGCTTGCGCG 11387 31 100.0 34 ............................... AAGAGAACGCAAGTGAGAGACAGACCATCGCGGG 11322 31 100.0 34 ............................... CAGGGCGACCGGAAGGAAAAGAACCGCGTGCGCA 11257 31 100.0 35 ............................... AACCCCACCGAGATTAAAAACTACGTGGTACAGGG 11191 31 100.0 36 ............................... ATGGGCGAAATCAAGCACAGCGCCGACGGCAAGTAC 11124 31 100.0 36 ............................... GACAACGCCCGGATGCTAATTGCGGCCCTGGGGGAG 11057 31 100.0 36 ............................... CCGGCCGGCAAGGCCGGCACTGTCGCGGCGGTTACC 10990 31 100.0 35 ............................... TCGAGCAGCAGAGCCCGCCCGTCGGCGACCATTTC 10924 31 100.0 35 ............................... CAGAGCGCCCAAAGGCGCATGCGGAGGGCCGGGTC 10858 31 100.0 35 ............................... GTCGTCCAGCGTGCAGACCAACGAGCCGGTATGGT 10792 31 100.0 35 ............................... AGGTCGAACCGCTTACCGTTGTGGGCCACGACCAC 10726 31 100.0 36 ............................... TCGTAGTCACCTCTGTGGTTGTGGAGTTGGGGAAAC 10659 31 100.0 34 ............................... TTTCGGCCCCGTTGCTCGTGCCCCCCGTGTAGGT 10594 31 100.0 34 ............................... AGCCGATCAGGTTGCTGTAGGCCTCACGGACCGA 10529 31 100.0 34 ............................... TGGAGATTTGCCAACGGGCTACAGATTACCTATG 10464 31 100.0 35 ............................... CGCATACCGTCCTCGCCGAAGTGCTGCGTGAGGTA 10398 31 100.0 35 ............................... AAGGCTGCGATCACCACCGCGGCGACGGGCGCCGG 10332 31 100.0 34 ............................... CCGAGCACTACGTAGAGCCAAACATCGCGCTGTG 10267 31 100.0 36 ............................... TCGCTAGGCGCTAATTTAGAGGACTTGGGGAAAAGG 10200 31 100.0 36 ............................... GACAAAGCGATGGCCGGCATCTACGCAGACCGCACC 10133 31 100.0 35 ............................... ATCTGTGCTAGGTCCAGGCGTGTGCTTTCCCGATG 10067 31 100.0 34 ............................... AGGGCCTGCGGCCAATCCGTGGGGTCCTGGTGGC 10002 31 100.0 34 ............................... CTGTTCGGTCGCACGATGCTGCCAACCTGCAACA 9937 31 100.0 34 ............................... CCCTGTACTTCGACCCGTCTGAGGCTTGGTACGA 9872 31 100.0 34 ............................... CCGAGGCGGCCGCATCGCTGGGCCTTCCGCTTCC 9807 31 100.0 34 ............................... TGGGACAGGCAATTCAGCCGGAACTTAAGGCCGC 9742 31 100.0 35 ............................... GGGCGAAGTCCATGCCTACGGCAAGATGCCCAACA 9676 31 100.0 36 ............................... AAAGCTGGGTTTGTGGTTGCCGATAGAGTCAGCGCG 9609 31 100.0 34 ............................... CGATGTGTCTGCGCTCCGCCTTGCTAAGCAGCTG 9544 31 100.0 34 ............................... CGGAGGTGCCGCAGATGGCGACTAACCCCGGCTA 9479 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ==================================== ================== 47 31 100.0 35 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : TAGTAGCTGCGGCCCAGTTGGTCGCGTCCTCACGGGCGCGTGGATTGAAACTTGCGCCAGAAGGTTGTTGCCGAGTCCGCGTCCCGCGTCGCGTCCTCACGGGCGCGTGGATTGAAACACTTTTAAGTGGTCTAGCCGCTTCCACAAGTCGGGTCGCGTCCTCACGGGCGCGTGGATTGAAACTGTTTTGGTCGTCCAGCCCGGTATTGACCTGCATAGTCGCGTCCTCACGGGCGCGTGGATTGAAACATCGTCACGGACGATGAAACTGGCGAGTCCACGGGGTCGCGTCCTCACGGGCGCGTGGATTGAAACGACGTGCGCATGCAGAGGCAAACGAGGCTGCCGCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNG # Right flank : CACGAAACCGAGTAGCGTATGCTGGTGTTGGTGNNNNNNNNNNNNNNNNNNNNNNNNNNGGCGCGTGGATTGAAACACCATCATTGGTGAGTCCACCTTGGTTAGGGCGGTCGCGTCCTCACGGGCGCGTGGATTGAAACCGCTCGTGGAAGAAAGAGACGGCGCAGTGGTACAGGTCGCGTCCTCACGGGCGCGTGGATTGAAACAGTCTGCCGTACAGCCCTACCGGCTGGGACTGCGCAGTCGCGTCCTCACGGGCGCGTGGATTGAAACGTCGCGTATCGGCAGCACCATGCGATCCATATCCACGTCGCGTCCTCACGGGCGCGTGGATTGAAACTGAAGAGGGAGTACATCGCCTCGAGCACCTGGTCCGTCGCGTCCTCACGGGCGCGTGGATTGAAACCCAACCAATCCCGCGCGACACAGCGTACGCCCATGTCGCGTCCTCACGGGCGCGTGGATTGAAACTGGGTTATCGCGGTAATAGCACTTGATTG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [25.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 6 13728-13368 **** Predicted by CRISPRDetect 2.4 *** >NZ_MADP01000017.1 Xanthomonas translucens pv. poae strain Utah5-P1 contig_17, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 13727 31 100.0 35 ............................... CTCCTGCATGAGCTCCTCGGGGGTGAGCGACACCG 13661 31 100.0 34 ............................... TTGAGGGGTACACCCTGCCCTACGGGGCCGTGTC 13596 31 100.0 35 ............................... TTTATTTCGGTGGGGCTAAATGACTGTGCCTTGCC 13530 31 100.0 35 ............................... GTCGAGATGGCTGCACAGTTGCTGCCCTTCGACCA 13464 31 100.0 35 ............................... TCCAAAGTATGCAAGCGGGGCAACGGGTGCTCCCT 13398 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== =================================== ================== 6 31 100.0 35 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : TGAAAAGGCCGCCGCTCCATGATGGTTCTGGTCAGCTACGATGTCAGCACGAGCTCCCCAGGCGGCGAAAAGCGACTACGCAAAGTCGCCAAAGCCTGCCGTGATCTCGGCCAACGCGTGCAATTCTCGGTCTTCGAAATCGAAGTGGACCCTGCACAATGGGCCGCCTTGCGGCAGCGCTTATGCGACCTGATCGATCCAGGCGTCGACAGCCTTCGCTTCTACCAGCTCGGCGCGAAATGGGAAGCCCGCGTGGAGCACGTCGGCGCCAAGCCCAGCCTGGACCTCAAAGGCCCACTGATCTTCTGACGCGAACCGCAAGCGGCCGGGGAAAACGTGGCAGGTTCGCACAACACGCCAAGTCATTGATTTTAAATTAAAATACTTGACCCCCTCCGCTCATTGCATGCCCGCGGCAGCCCAATTAGATTGCGTCTTCGAAGGGTTCCGCAAAAGTGCGGACTTTTTCCCAGCCCCCATCAGCACTTATGCTCAGGGCA # Right flank : GTTTCCGACGCCCTTGATAAAATCAAGGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGGCACGTCGCGTCCTCACGGGCGCGTGGATTGAAACCCGTCCGGTGTCGTGTAGTAGCTGCGGCCCAGTTGGTCGCGTCCTCACGGGCGCGTGGATTGAAACTTGCGCCAGAAGGTTGTTGCCGAGTCCGCGTCCCGCGTCGCGTCCTCACGGGCGCGTGGATTGAAACACTTTTAAGTGGTCTAGCCGCTTCCAC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [25.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //