Array 1 102259-103538 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARQY010000012.1 Listeria booriae strain FSL L7-1586 NODE_12_length_104465_cov_46.470198, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 102259 30 100.0 37 .............................. ACGCTGGCGCAAGAGTATTACCAATTCAGTGATACAA 102326 30 100.0 37 .............................. TCCGCATTCTGGCGTTCGACACAAGCCTCGGACGACC 102393 30 100.0 36 .............................. TACATATAACGCCTTTCTGTTGTATATAATATTTCC 102459 30 100.0 36 .............................. GACAAATAATCAAAACCAGCCTTTTGCTGTGACATC 102525 30 100.0 36 .............................. AAATCCATCGCATTCAATACCTTGAAGCTGTTGACA 102591 30 100.0 34 .............................. GCCATTCCCTATAGCTCGCTTTGGATGCCTCTGT 102655 30 100.0 35 .............................. TCTAAATTAAATGGTCTCATTGTTAACATCACGTG 102720 30 100.0 36 .............................. AGATAAGTTTTAAATATATGAAGGAGCAACGATTTT 102786 30 100.0 36 .............................. CTGTTCAACTCTCCAACGGTGGCTTCTCTCGTATTA 102852 30 100.0 37 .............................. TCGGTAGGCGAATTTGGGTATTAAAAAAACGCCTTAT 102919 30 100.0 36 .............................. GACTGTGATCGTATTGATTACAACAGGTGCTTTTTT 102985 30 100.0 36 .............................. CATTATTATTTCTTAAACAATAGTGCAACTAAGTGA 103051 30 100.0 37 .............................. TGATATTTCAAAGGGAGTAGATCCAGCCGCCCCCAAT 103118 30 100.0 36 .............................. TCGTAACCCGTCCAGCGCCGCACAGCGTCGGCAACT 103184 30 100.0 35 .............................. ATTTCAAGCCGTTTTTTATGGGCAAATTTTGTTAC 103249 30 100.0 35 .............................. CCGTTAAGCACATCTGTAATGCTAAGACCTGCTTT 103314 30 100.0 36 .............................. AGCATCACGCGAGATTACTGAAAAATATCTAGGTCC 103380 30 100.0 34 .............................. TCTTCTGACCTTCCACTAGCCCCGTATGCACGGC 103444 30 100.0 36 .............................. TCTTGTATCAATTTCTTCTGTAGTGCCAGGCTTGTG 103510 29 93.3 0 .......................-.....C | ========== ====== ====== ====== ============================== ===================================== ================== 20 30 99.7 36 GTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : GCACAAAGAAGGCAAATGGGCTGGTATGTGTGGCGAAATGGCCGGCGATCAAACAGCTGTACCATTGTTGCTAGGAATGGGGCTAGATGAGTTCTCTATGAGCGCATCAAGTATTCTAAAATCACGTTCATTAATCAAACGCCTAGATCGCACAGAAATGGCGAAACTAGCGGACGAAGCACTACAACAAGCTACAGAAGAAGAAGTTGTAGCGTTAGTTAATAAATATACAGCGGAGTAATTTCGTTGTTTGGAAGGCCCGAGGATTTTCCTCGGGTTTTTCTTTGTGGGGAAAAGCGGGGTCAAAAATCTGTCGACCGTCGGTAGTGTGGAAATTAGGGGGCATCGACAGAGTTTTGTTAAGCGTTGATGTGATTGGATTTGAGGCTGTTTTTGGAGTTCGGGTTGTAAGGTTTGGGAGCGGAAATTTAGGATTTGGTTGTCGGTCGACAGATTTGGGTGTTTGAGGTATGATGAGAGTAGGCGTTGATGGGGTACCT # Right flank : CCCTTTTATGATTCTAGCAGATATTCTAACCATAGAAATAAATTGAATCAAATCAAATCTTCTTTTTAGAGGTTGCTGACAATATGGTTAACGATAATTAATTGGTGAGACTGTGATTGGAACTGCATATGAGAAGTTTGAAAGAGAAGCTTTAAATACACATATTAGGAAAAATGATATTAAGTGAGAAGCATCAATCGGTACATAAAAAAATCTTAAAGCAACTAATGCTAAGTGTATAACTTCAAAAAAGAAGGAATTTAGAGGTACTTTTAGTCTATTGTATAAGAAGTTACAGTTCAAGCTGATGCTGTTTGCGGTGCAGATGGAAGTTTTTCTTCATGAGGAGCGAGCGGGTTACCGTTAGAACTTTCGAAGGTAGCGTTTCTATGAGTCTAGGCCGTTAAAACTTTGATTATGTTATCATTGAACGATGAGCGAGATAGTGAAGGCAATATATTTAATCTTTGTGAAAACGTTTGCGATAACATATTTTGCGT # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 60329-61357 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARQY010000011.1 Listeria booriae strain FSL L7-1586 NODE_11_length_108744_cov_31.191024, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 60329 30 100.0 38 .............................. CCCTTTCGGATATAAAAAAGGGGAAGACGGGGTTTTGG 60397 30 100.0 37 .............................. TCTGTTCCGAACATTCCATACTTAACTGACACTTTAT 60464 30 100.0 38 .............................. ACTAATTACAACACATCATTTGAATTAGAGAGTGTAAT 60532 30 100.0 37 .............................. GGTGATCTTATAAAAAAACCTGCTGTACGCTATACAC 60599 30 100.0 37 .............................. ACAACAATCCGGTGATAAGAGTACCATTTTCGTTCGT 60666 30 100.0 36 .............................. TTGCAGAAGACGTGTCGTAGACCTCTGTGGCGCTCT 60732 30 100.0 36 .............................. CCGATTTTTTTCCTGCTGTACGCTATGCACAAGACA 60798 30 100.0 36 .............................. AATGAAATATATATCAACTAATTGTTATGGCTTTGA 60864 30 100.0 36 .............................. AATCATATGGGTTATATCAATGATAAGGATGATTCT 60930 30 100.0 37 .............................. TCAGATTACTAATATGGGCCCCTTTTTCTATGTCAGC 60997 30 100.0 36 .............................. TTACTATCAAACATGCCAGCAAAGGTTCCAATTTTA 61063 30 100.0 36 .............................. TCTTTCTTTTCCATTTCTTCACACCCCTGTGATATA 61129 30 100.0 36 .............................. GTGATTTGCGCTTCTGTTGTCGCACTTTCTCCTTGT 61195 30 96.7 37 .............C................ CTAATCATTGGGAATGCAATGCACAAAGGTATTGAAA 61262 30 96.7 36 .............................C GCCTTTATCACAACACCTTGTGCCTCATTAGGCAGA 61328 30 83.3 0 ....................C..CA...TC | ========== ====== ====== ====== ============================== ====================================== ================== 16 30 98.5 37 GTTTTTATCTAAGTAATGTGTAATGTAAAT # Left flank : GACGCTGAGCGCAACATCAAACCAGTACCGAATTCCGAGAAAATTTGGGATGCGGATATCGTTCTAATTGCCGTCGGATTCGCCGGCACGACCAAGTCAGTATTCGAAGACTTCCAAGTAGCAAAAACAAACCGCCACACAATCGATGCTAGAAAAGGTTTTTACCGTACCAACGTAGAAGGCGTCTTCGCATGTGGTGACGCAAGATACGGCCAAAGCCTTGTTGTAACAGCGATTAACGAAGGAAGAGAAGCCGCCAGCGAAGTAGACTTCTATTTGATGGGCGAAACATTCTTACCATGATAAAAAATCTGTCGACCTCCAGTAGCGTAAAAACTAGGGGACATCGACAGATTTTGTTTTTACTTAGGGGGAGAAGGGGTTAGGATGGTTTTCGAGAAGTAGAAAAAAATAAACAGGTGCAAAAAAGACAAATTTCTTGGAGGTCGACAGATTTGGGGTGTTGAGGTATGATGGGAGTAAGAGTTGAGAGGGTACCT # Right flank : CCCCAAAGAAGGAGAGACACCAAATGACTATGGAAAAATTAAAACTACGAGTCACCATAGACAGACCTATCGGATTTAAAGACGACTACGGAAATACCTACCCAATAAACTACGGATTCGTTCCCGGTGTCATAGCCGGAGATGGCGAAGAACAAGATGTTTACATAATTTCTAAAAATGCAACAACTCCACTCGACATATTTGAAGGAATACTCGTCGCGGTCATACACCGGAAAAATGATACCGAAGACAAGTGGGTAGTTACCTCAAAAAATGAATTATTATCCAAACAAGAGATATCTGAAAAAACGCATTTTCTAGAGCAATACTTTGATTCCGTTATCGAACTCCTTTAACAAATACAACGGTATAAACGCTCACCTTCTCGTAAAATACCTAAATAAAAGATGAATCACTATTAAAAACAGCACACTAACCATGAAAAGACCACTCGATACCCAGTCCATAAAAAGGCATACAAATACTAAAATTACGAGAAC # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGTAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 2 66533-64606 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARQY010000011.1 Listeria booriae strain FSL L7-1586 NODE_11_length_108744_cov_31.191024, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 66532 30 80.0 21 .G..T.....T.....GG..G......... ATTGTCATTGTTGTCGTTCTT AG,A [66512,66524] Deletion [66482] 66478 30 100.0 35 .............................. TGCGCCAGCTAGCCCACCAGCCCAAGCCATCACAT 66413 30 100.0 36 .............................. GAAGTGAATCCTTCCAGCATATCTGCTTTTGCATTG 66347 30 100.0 37 .............................. TCAACCTTTGCTAATACAACTGGAAAGCCTAAACCTT 66280 30 100.0 35 .............................. GCAAAAAGGCGAGTAATGAAACGCTCGCCGAAGCT 66215 30 100.0 34 .............................. GATGCAGATGCCTGATCCGTACTTTGAAAACGCT 66151 30 100.0 36 .............................. AGGTATCTGTTGCAGATGCCTTTTTTATTTGCTCAA 66085 30 100.0 35 .............................. AAAGAGGTATGATTTGTCGGACAAAATATAAGCAA 66020 30 100.0 36 .............................. AACAAACGGGTTCTTCAAGTACATGGTTACAGGTAA 65954 30 100.0 37 .............................. TCGGCTTCGCAGATGTTCCACATTCCGATTGAAGACG 65887 30 100.0 36 .............................. AAACGGAATGAGTGGAGAAAATGAAGAATTAAAAGT 65821 30 100.0 35 .............................. GATATTTTCCTCCTTGCTTGACCCATTCCATTTTG 65756 30 100.0 37 .............................. TCTTTTTTATCAAGGAATAGCCAAGTGGAAAGGCAAG 65689 30 100.0 35 .............................. CATAGCGACATTGTATATTACTTAGAATTTGACAA 65624 30 100.0 36 .............................. AATTTTGGCAAGAACTAATCAGGGAGTGATAAATTT 65558 30 100.0 37 .............................. GCATGTTTCCCATCATAATTTAAATCTGCTAATGCAC 65491 30 100.0 36 .............................. TATTTATAGCAAGCCAAACGCGCGGGGATCAATCGT 65425 30 100.0 34 .............................. TTAATGAGCGCCGAGCTCCCTTGTTGAAATGCGG 65361 30 100.0 36 .............................. CTTTGATCCAATGGATGAAGCGTTCGTTGGATATGA 65295 30 100.0 36 .............................. AAGATAGCCTTTTCGGATATCAAAGAAGTGTTGAGT 65229 30 100.0 36 .............................. GAAGAATATTTATCTGTCTCAAGTTTCGATTCTAGC 65163 30 100.0 36 .............................. AATGGAAGTGGTAAGGAGGAGGAACAAGCATGACAG 65097 30 100.0 36 .............................. GGATGTATTTAGGTGAGGTTATCGGGCTTGGCGACA 65031 30 100.0 37 .............................. TAACAAGAGATTTTGAGAAGAGTTTCATGCAAGCGGA 64964 30 100.0 35 .............................. AATTACAAAGGTACGAAAGCATCGGAATATTTTTA 64899 30 100.0 36 .............................. TAAATACATGGCTGATTTACTGTACACAGAAATGGA 64833 30 100.0 34 .............................. TTGTTACTTATACTTCCCTTCGTTCTCGTTATTT 64769 30 100.0 38 .............................. ACATGATTTCATAGAGTGTTGTTCAAAATGTGTACTAT 64701 30 100.0 36 .............................. TACTGCTATCTGCTGTACTTTCTTCGTCGTTTTTAG 64635 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 30 30 99.3 35 ATTTACATTTCACATTACTTAGATAAAAAC # Left flank : CTGTTTCAAGAAGCGCTTTCACTTCGTACTGTGTAGCAGTAATATACACATTCGAACCTTCATAATCGCGTTTCCAAATGCCAATGATAGGTAAATCCACTAGTCCTTTGATTGCTTGAATGTCTTCCGGAGAATTTGCTCGAATTCCTTTAGCGCCACCTTCTTTAGCAGCAAGCGCCATTCGCGCCATAATCATGGAACTGTGCAAAGATTCACCTTCTAAAGCTTGGCAAGATACTATCAATTGTCCTTTTAGTGTATTTATATTCATCATAACGCTCCTTTCAGAAAGAATTTTACACTATTATTTTATTTTTGTAAATGTTTTTCACCAATATATTTTTTAAATGTATGAAATATATTCTATACTTCCTATTTGTTTCATTTACAGTAAGCAAGTCTATGGGTTTTTTGAGCATGACAAAAAACACTTATAGACTTTGGGTAGTTTAGTGGTTGCTTATAGTTTATTGGGTTGGGGGATGTTATGTTTATGGGGG # Right flank : AGGTACCCCATCAACGCTCACTCCCATCATACCTCAAACACCCAAATCTGTCGACCGACAACAAAATTCTAAATTATTGCCCTCAAACCTTACAATCCAAACTCCGAAAATAGGCTTAACCCCTTTAGTACCAATGCATAACAAAAATCTGTCGATGTCCCCATTATTTTGCACTACTGGAGGTCGACAGATTTTCTTCCTGTTATTACGAATCTAGATTATCTGTAGAAATTACCTTTTTCTTCCCGTCTTGTACAATCAATGCGCTATTCGCAGGAATTGTTTGCTTTTCGTACTCAAAATTCTTGTTCGAGAAATTCGCTATGACTTGTAGATTCGCGCCAAATTTTGTTTTCTGAACGAGACGTTCTTTATCCAGCACTTCAAAACTGCTCATTTCATGTTGTAATGCTTCTTTTTGGAATGGTTCCCAGTTTTTCGTATTGCTGATGATGTCTTTTTTATGCAGTTTCCAGTTGGCTTCGTCGAGGTGGAACATT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTACATTTCACATTACTTAGATAAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [48.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 575-809 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARQY010000034.1 Listeria booriae strain FSL L7-1586 NODE_34_length_19279_cov_40.928393, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 575 36 100.0 30 .................................... TTAAAGTTGGCGATCGCGTGCAGTGTATTT 641 36 97.2 30 ........................A........... CGGATAAGTTGCTTGCAGAACACGAGATAG 707 36 100.0 30 .................................... TCAACACCCATTGTAGAACGCGAAGAACCG 773 36 86.1 0 ..........................TG.A..C..A | A [802] ========== ====== ====== ====== ==================================== ============================== ================== 4 36 95.8 30 GTTTTAGTCCTCTTTTGTTTTGAGGTACTCTAAATC # Left flank : CTTTTTCTTGGTGTAATACCGCTGACATTAATTCTGTTATTTCTTTGTTGATTGCTATTTTATGTTTATTTTTTTCTTTTTCGTTGAGTTTCCTCACTGTTTTGTTGAGAATACTCTTATAAAACGACTCTTTCTTTTTATCAAATATAATTTCTTCTGTCTTGTTCTCATCAATACCTTCATAAACCAACTGGCCTTCTTTACTTGTCCTCTCCATTACGATAGTTCTTCCATCAACTCTCATTTTGGTGATTTTCATTTGTCTGCTCAGCTCCATTTAGTTTTATAGTTGTATAGCTAGATGTTTCAACTTTCACATGTGTATGATATTGCTAATATTTATCAATATATTCATTATACAAGAAGGTATTACGTAAAACAACATCCATTGGCAATTATCCACTTTGCTAATAATTGAATAAAGCCATAAAAACTACTGATCCAATTCTTGGAATCACAGTTTTTATGGCTTTATTGTCGAATACTTATCCACAGAAGAG # Right flank : ATCTATTTTACTTTCAACAGTTTAACTATACCAAATTATTAGTAACTCTGCATCTTCGCGTAATCACACGTACTAAGTAACTGTATTTAGCTATAATTATGGCTTTTATAATACGAAACGTATTCATCAATCTTTAAGATACTTAACACCAAACGATTTTGAAAGAAAAGCGAATTAAATTCTATTTATTTTTGTCCAAAATATTGACACCACATCAATATCGCCAATCGTTCACTTTACTCATCTAATCATATCTAAAAAGGATAGGAAGTCTTTTGCAATCCAATAAGTATTTTCTTCATCGGTTGATTCTTCAAACTGAAATGAGTCATCCCAATAATAGATACCTTCAAATTCTCCCTCGCAAATCATTACAATCATTCCTTGCATGAGATCATCGCCAATAATTATTGAACCTTCCATCATATCTTCTTTTAGTTTTTCCATCCACGTCTCTATGTTAGAGGCACTTTCCCCAGTATTAACACCATATAACACAT # Questionable array : NO Score: 2.65 # Score Detail : 1:0, 2:0, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTCCTCTTTTGTTTTGAGGTACTCTAAATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.40,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 55612-56951 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARQY010000004.1 Listeria booriae strain FSL L7-1586 NODE_4_length_236431_cov_40.604982, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 55612 30 100.0 34 .............................. ACTACACTTGATGAAGTAGTCGCTAGCACGCAAC 55676 30 100.0 35 .............................. CTGCATAAAAAGTATTATGCTTACCAACCAAGGGT 55741 30 100.0 36 .............................. GCGTTTGCCATGTCGCGGCAGACGCGAATATATTCA 55807 30 100.0 35 .............................. ACTTGTATTTTCTTATCATCAGCCCATTTTTTATC 55872 30 100.0 36 .............................. TTGAAAAAATCACTCATACTTTCAGTCGCATTTTTG 55938 30 100.0 36 .............................. AGTGATGGCGGAGTATCTGGGTGATTACGAAGGTTT 56004 30 100.0 35 .............................. AAAGAATATCTTGATTGGCTGAACGAGCCGCTTTT 56069 30 100.0 36 .............................. ATAAGCTTGTACAACGCATCTAGCGACACAATTAAT 56135 30 100.0 34 .............................. ACATATACAGATGCCTATATTTTTTTCACAAAAG 56199 30 100.0 36 .............................. CTCACCAATGATTCCCTTTACAACTTTGAATAACCT 56265 30 100.0 35 .............................. TTGATCGAAATTATGAATACATGGTTTTCACAGAT 56330 30 100.0 37 .............................. CATTTACTTTCTCCGCATTCGCCTTTCTCGCATCTGC 56397 30 100.0 36 .............................. TTATTCTAATGATATCTGTAACAATAATTAACAGTT 56463 30 100.0 36 .............................. ATCGAAGAAAAAAGATGAGTTGGAAGCATATCGAAG 56529 30 100.0 35 .............................. TAAGTTCTAGAAGCTCTTCTAATGGTGTATCTCTC 56594 30 100.0 35 .............................. CTCAGTAAAAACAAGGCTGATGCAAACAAATAGAA 56659 30 100.0 37 .............................. TCGTTCAGTTTAAATTTTCTTACTCAATCCTATGTCA 56726 30 100.0 36 .............................. TGGTAAAATCAAGCGTATCGTATCCACCTGAACCAC 56792 30 100.0 34 .............................. TTGATCAAATCAATAGGTGACTCACGGACCTTGT 56856 30 96.7 36 ....................G......... AAGGACAAAGGCCAAACGGTACACTTTACAAACCCA 56922 30 76.7 0 A......C.C.....C.A.....CA..... | ========== ====== ====== ====== ============================== ===================================== ================== 21 30 98.7 36 GTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : AAGATTTGGTGGTGAGGTATGTATATTATCTTGATTTACGACATAGCAATGGATAACGGCGGCCCGAAAGTATCGAGAAACATTTTCAAAATCTGCAAAAAATATTTAACACACGTGCAAAAATCGGTATTCGAAGGCGAAATAACCCCAGCACTACTTGCCAAATTGCGAATGGAGTTAGACCAGTATATTCGTGACGAAGAAGATTCCGTCATTGTGTTTTCTAGCAGAAATGAAAGATGGCTGGAAAAGGAGTTTTGGGGCGTTGCGGATGAGAAAACATCGAATTTCTTTTAGTGTATAGAAAAATCTGTCGACCTCCAGTAGTGCAAAATAATGGGGACATCGACAGATTTTTGTTAAGCGTTGGTGTGATTGGATTTAAGGCTGTTTTTGAAGTTCGGCTTGTAAGGTTTGAGAGCGGGAATTTAGGATTTGGTTGTCGGTCGACAGATTTGGGTGTTTGAGGTATGATGGGAGTAGGCGTTGATGGGGTACCT # Right flank : TCAATTTGTTTAGCTACGATTGCTTTGGCAGACAATCTCAGTCTGCCAAGCAATGTTCGCAGCAGTATACTCTACTTTCCAGCTCTCACAAAAAATCCTCACGATAATCCTTAACATACTGATCAAACGAAGTAGCCTCACGTTGCAACAATTCCTGTGCTGTTGGGGTTATTTGTTTTGCGTTTCCCATTTGGGTTATGAAGTAAAGCATGGTCATGACGTTGGCGAATGCTTTTGGGGTTCCTCGTTTTATTATGGTTGCGCGAAATCGTAATAGGGACGGCTTGCTGTATGTTATTTTTCTCCCTAAAATGGCTGTCATCTTCTCTGCCACCTCATAATACGTCAATGCTTCTTTTCCGGTAACACTGTACTTTTGTCCGATATGTTGGGGTGTATTCATCAGGCAAATAGCAGCGATCTCCCCAATGTCACGTGTATCAATAAAGCTCGTCCGCGCATTGCCTGCAGGAATGAATAAATCATCATGTTTCTGAATA # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //