Array 1 6258-7681 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIMIH010000036.1 Streptococcus agalactiae strain HFJ96 HFJ96_Scaffold36, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 6258 36 100.0 30 .................................... CTTCATAGTGATTTAATCCAATGTGCATAT 6324 36 100.0 30 .................................... CTTCATAGTGATTTAATCCAATGTGCATAT 6390 36 100.0 30 .................................... TTACGTTCTGAAATTATTGCTTCTTCTTTA 6456 36 100.0 30 .................................... TACCTTTGCCAGCATCTTTCACTCTAGCTT 6522 36 100.0 31 .................................... CTTTGAAAACTGTAGAATGCATCATCACCAG 6589 36 100.0 30 .................................... AGTACAGGAAAACTTTATTGGAGATTTAGC 6655 36 100.0 30 .................................... TTACGTTCTGAAATTATTGCTTCTTCTTTA 6721 36 100.0 30 .................................... TACCTTTGCCAGCATCTTTCACTCTAGCTT 6787 36 100.0 31 .................................... CTTTGAAAACTGTAGAATGCATCATCACCAG 6854 36 100.0 30 .................................... GGTGGGAAGTTATTTTCGACAGTGTAAGTT 6920 36 100.0 30 .................................... TCGATTGTTGAAGAAATAAAACAAGCGATT 6986 36 100.0 30 .................................... TCGATTGTTGAAGAAATAAAACAAGCGATT 7052 36 100.0 30 .................................... AGAGACTAGAGATTTTCTTCAGACTTATGA 7118 36 100.0 30 .................................... GTTTTACTCATTCCCACAAAAGTATGTATT 7184 36 100.0 30 .................................... GAAAAAGGATTATGATAATTTCTATCTGCT 7250 36 100.0 30 .................................... GATGAGACCACAGAAGTTAACTATCTCAAG 7316 36 100.0 30 .................................... GCAAATATTTGGATAGTCGACCCTTCCCAC 7382 36 100.0 30 .................................... TAATACTAATTTACTAGCGTCAAATAAATC 7448 36 94.4 30 ...........A..C..................... AATTTCCATAATCTGATCGCCAACCAGGAG 7514 36 97.2 30 ..............C..................... TAAAGCATGTAGTATTTGCAAGCCATTAGA 7580 36 97.2 30 ..............C..................... CAATATACCAACCAATCCTGTTACCTGATT 7646 36 97.2 0 ..............C..................... | ========== ====== ====== ====== ==================================== =============================== ================== 22 36 99.4 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : AACGAAAAGCCAGAAGTGAAATCAATGGTAGAAAAATTAGCAGCTACTATTACAGAACTTATCGTATTTGAGTGTCTAGAGAATGAGCTTGATTTAGAATACGATGAAATCACGATTTTAGAACTCATTAAGGCACTAGGAGTCAAAATTGAGACACAGAGCGACACTATCTTTGAAAAATGTTTTGAAATTATACAAGTTTACCATTATTTAACGAAAAAGAATCTCTTGGTTTTTGTTAATAGCGGAGCTTATCTTACCAAAGATGAAGTTATAAAATTATGTGAATACATCAATTTAATGCAAAAGTCAGTACTCTTTCTAGAACCTAGAAGATTCTATGATTTACCGCAATATGTTATTGATAAGGATTATTTCTTGATAGGCGAAAATATGGTATAATATTAGTAAAAGCACAGTAATAACAAGGAATCAACGAAACTGAAGTCCTGCTGAGACGAATGGCGCGATTACGAAAGCTCAAAAGAAAATTTTCTACG # Right flank : CATTAAAAGATGATTGTGGAGGCGTTGCAATGTTTTAGAGCTGTGCGGTTATTATGCTAGGGCACCATTGTGGTGTTCTAGTTTTTTGTTATACTGAAATAAATTTTCAGAGAATGTGGGGGAAGGCGGTAATTAGATTAATTCAAGACGTAATTCAGAACTTAGTTGGCCAAGCTAACGAAATCACCCCAGTTTATCAGTTTGATTGGGAAACTTATATATTGGCGACTAAAAAATATGGACGTCATTTATAGGTGTGTCTATTAGTAGAAAATTCGAATTATTTTTCGGATTCAAAGAGAATGTGTCAATAGAAGAGATACGAAAGACTATAATTCCAACCTTATGGTTAAAGGGCTAGGTTGTTCTACGCTTTACTTAATTATTAGTTTGACAGCGTTGGTTCTTTTAGTGATTGCTGGTGTTTCTTTGTCACTAATACTTGCAAGCTTACAAGGAAAGTAGTGGAGAACCTATCCATAATCAACTAACAGCTATGA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //