Array 1 63630-62929 **** Predicted by CRISPRDetect 2.4 *** >NZ_SHKC01000005.1 Escherichia coli strain EC_07 NODE_5_length_175689_cov_14.763558, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 63629 29 100.0 32 ............................. CGACAAAATTCTCAAAACTCGATCAGGAAAAT 63568 29 100.0 32 ............................. CCACCGTTTTCGCCCACCAGGGCGCACAACCC 63507 29 100.0 32 ............................. GAAAAAGAGAAGGTAGAGAAAGCGGAATCTGG 63446 29 100.0 32 ............................. CAGGTCTATCGGGCGATCAATAAAATCGGTCA 63385 29 100.0 32 ............................. GCGCACCGTTGCGTCGAAAAGGCGCTGGAGAT 63324 29 100.0 32 ............................. TACGCTTACACAACGGGCGAATATTTTAACGG 63263 29 100.0 32 ............................. GAACCCAATAGTGAAATACAGCATCATTTTTT 63202 29 100.0 32 ............................. ACCTGGAGGCGAAAAAGGCGCTTCGACGTAAA 63141 29 100.0 33 ............................. GAGGCCTATATCTCTAACCGCATCGGGCTGCGC 63079 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 63018 29 100.0 32 ............................. CTGCGTAGCGACCTTTGCTCTCAATTTCGTTG 62957 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 12 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAACAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAATCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAGGTTATGTGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCCAACCCATCAAGACGCCTTCGCCAACTCTTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCAAACCTGACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCGGTGCCTTTCGGATAGTTTTTATTCAAACCAGGATTGGTCGTCGCGGCTATTCCCTGACTGCGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [40.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 80990-79131 **** Predicted by CRISPRDetect 2.4 *** >NZ_SHKC01000005.1 Escherichia coli strain EC_07 NODE_5_length_175689_cov_14.763558, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 80989 29 100.0 32 ............................. GCATTGACGCTTTAAACGACGACGGACGCCAC 80928 29 100.0 32 ............................. AAAACAGCCTTTAGATTAGTACCTGACGACCG 80867 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 80806 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 80745 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 80684 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 80623 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 80562 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 80501 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 80440 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 80379 29 100.0 32 ............................. TGCCGCCAGGCCAGCGACACATCAGACAACTG 80318 29 100.0 32 ............................. GTCTGTGATGGCCTGCTCGTGAGTCCGCGGCG 80257 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 80196 29 100.0 32 ............................. TGCGCCGTAGCGTGTCCACCTATTGTAGTAAA 80135 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 80074 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 80013 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 79952 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 79891 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 79830 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 79769 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 79708 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 79647 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 79586 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 79525 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 79464 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 79403 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 79342 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 79281 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 79220 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 79159 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 31 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //