Array 1 136-872 **** Predicted by CRISPRDetect 2.4 *** >NZ_AUPM01000060.1 Petrotoga sp. 9PW.55.5.1 c6_7_corrected, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ============================================================ ================== 136 27 100.0 41 ........................... GTAAGTGCCGTTAATGCGTTCCCAAAGAACGATTGGGAGTT 204 27 100.0 40 ........................... AGGAGAATGATGGATATTATGGATGATATGAGATTTTGTT 271 27 100.0 59 ........................... AATTATCAAATAGTGATATATTATCTCAAAGATTATGTTTCCATTCCTTTACTACCCAC 357 27 100.0 38 ........................... GTTAAGGACAGTGTGTTTAGCCTAAAAAGCTAAGAGTT 422 27 100.0 40 ........................... TTCACAATGTATTTGTTACCTGACGTTAACGAAGCTGGTT 489 27 96.3 40 ..............T............ TTGATCTATCAGGTTTATTAAAAACAGTGAGAAAAGAGTT 556 27 100.0 40 ........................... ATGTAGGAATATATACAGAAAGATATTGTTTAGAAAAGTT 623 27 100.0 60 ........................... GTTTTCAAGAGGCTTATAGAAGGATACAGCCGTATGGGTTTCCATTCCTTTACTCCCCAC 710 27 100.0 40 ........................... GAAGAAAAAGAGGAAGAAAGTTATGAAGATTTAGATTGTT 777 27 100.0 42 ........................... TTCCTGAACACTTCCAAGCTATTTCTGTGGAGGAACCATGTT 846 27 100.0 0 ........................... | ========== ====== ====== ====== =========================== ============================================================ ================== 11 27 99.7 44 TCCATTCCTTATAGGTAGGATAAAAAG # Left flank : GGTANNCGGTTCTATTCCCCTTCCTCGAAGGGGTGGATGCAGCGTTTTATGCTGCAGACGGGGTAGTCACGCTTAAATTTGCTTTTAGCAAATTATATGTACCGTACTCTGAAATTCCCCTTCTGTGAAGGGCGCT # Right flank : GGCGTAAGACTACTATAAATACTATATCATAAAAAATTACGACTGTCAAGCTAATTTATTAAATTAACGTAAAGTTGACTTATAACATTCATTTTATCTATATCGTGACTTTTATAACAATTCTGTCGATCCCCGAGGTTTTACCCTTATTATAGGTCGACAGAACAAAAAATATATAAATTGATTAGCAATTTTTATGTAAGAATTATTAAAAGATAAAATTCTCGGGTTCTCCTTTTTCTAACCCATATGTTTCCTTTTTGAAAATTTTTCTTGATTCAAAAACATACCATAATCAACCTTCATAGAGATTGGAAAGAAGATGTAAAACTATATTCGAAAACAGGAGAAAAATTTGAATTCAATGTATTTAGCTACAAGTTAGGATACTCGAGATACTGTTACTTTGAATACAGGAAAGAAAAGACACAACAAGATGTATTTGAATGTTTAATATCGGCATTTAAGCAAACGGGAGGTATTCCAAAAGAGATATTTGG # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.25, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCCATTCCTTATAGGTAGGATAAAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.80,-2.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [60.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA // Array 2 3706-1444 **** Predicted by CRISPRDetect 2.4 *** >NZ_AUPM01000060.1 Petrotoga sp. 9PW.55.5.1 c6_7_corrected, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================================================================================== ================== 3705 29 100.0 37 ............................. TCAGATTGAGAACCTAAACTCAAAGTATGACCAGTAT 3639 29 100.0 36 ............................. CTGAATAAGATCTCGCTTCCGTTTGCTAGTGTAATA 3574 29 100.0 37 ............................. CCATTACGGAGGCATAATGTCTACAGGAGGTTTGAGG 3508 29 100.0 36 ............................. GTGGAAACTGAATATGAAGAAGGAAACGCAATAGAA 3443 29 100.0 36 ............................. TTTATCGTAGTTACAGCGATTGTAACTCCAGCGATA 3378 29 100.0 36 ............................. TCTCTGAAGCAGACAGCTTATAGCCTTGTGTTAGAA 3313 29 100.0 40 ............................. GATGAAATTGAAAATAAAGCTTACGCAATTAAAGGAATAG 3244 29 100.0 38 ............................. CTTTTTGCCGATACTGTGCCAGCTATTTTTGTATCTTC 3177 29 100.0 36 ............................. TTCCAAGCATTGTTTATCTCTGTTCTCGCTACTCTC 3112 29 100.0 37 ............................. CCTTTTTAGATAGATTTGATAAATAGAACAGGCCCAA 3046 29 100.0 36 ............................. TTTCTTGAGTCGCTTGTGTAATGGAAGGCTTATCAG 2981 29 100.0 37 ............................. TTTAGAATTGCTTTCATCCAATCAGGGAGATTACTTT 2915 29 100.0 37 ............................. GTCTATACCACCCATGAGTCTTGGAGCAGTATTTCCA 2849 29 100.0 36 ............................. AAAATACAAGCAAATGCAATCACAGCCGACAAAATA 2784 29 100.0 38 ............................. TTTTTGTAGCCTTTGCGTTGTTTTTCGAGATAGTTTAG 2717 29 100.0 37 ............................. TAGTTTTGTCTATCGCTGCGGATATTGGTATATTGCG 2651 29 100.0 38 ............................. ACTATTGTCAAGATGTTTCCACAATTGCTCAACCTTGA 2584 29 100.0 40 ............................. TTATGACTGAAAAGTTTATCAGCTGACATGAGATATCCAA 2515 29 100.0 36 ............................. GAAGGATGGCATTTTTTTCTGATAGCAGTTCATGAT 2450 29 100.0 35 ............................. GCCAACCCTGCTGCGAGTGTAGCTGCCGCCAAAGC 2386 29 100.0 38 ............................. TGTTTTTATGTTTTTTGGAGTAGGAAGCAATATTGATT 2319 29 100.0 36 ............................. CCAGATGTATATGCCGCAGTCAATTCTGTATTCAAA 2254 29 100.0 35 ............................. TATCAAACTCTCTCGGCAATTCTACACTTGCATAG 2190 29 100.0 35 ............................. AGCAGGTACTTGTTCAACTTCTCCCTCATCGCCTA 2126 29 100.0 36 ............................. GCGAAAAAGGAAATCAAAAATGGTATAGACTATATA 2061 29 100.0 37 ............................. GAAGCAGAAAAAGAAATAAATACGATAGAACGAACGC 1995 29 100.0 36 ............................. TTTCAGAAAGAGCAATATAATTGAGCATTTTTTCTG 1930 29 100.0 37 ............................. TCTATTTTTCATGTTTTTAAGAATAGTTCTTCTATTA 1864 29 100.0 36 ............................. TTTATCAAAGGTTGATTAGTATTTGAAAAATAATTA 1799 29 100.0 37 ............................. TATACATTCGAAGAAATGCAAGAATTGAACCCACATC 1733 29 96.6 102 ............................G CATATACAGTGCAGACGGATGGAACAAAGAATATGTTGAAAATATTGACAACGTGGGATGTAAAGCATATACAGTGCAGACACAGGTGGGTTAGAAGATTGA 1602 29 96.6 37 ............................G TTCTTTATCTCTTTCTTCGCAGGATACACATTGAATC 1536 29 100.0 35 ............................. TCCGTCCCATCAGGCAATACTCCATCTCCTATGTC 1472 29 86.2 0 .....................CGTA.... | ========== ====== ====== ====== ============================= ====================================================================================================== ================== 34 29 99.4 39 GTTTTACCTTAACTATGTGGGATGTAAAT # Left flank : CTATATAAGCCTTTAAAAGCGTGGTGGTAAAATATGTATGTGATAATAACTTATGATATTAGTGAAAAAAAGGTTAGCGTTGTTAATAAATTGCTTAAAAAATACTTAACATGGACCCAAAATTCTGTTTTTGAAGGAAATTTAAGCGTTGGTGTTTTGAAGAAATGCTTAATGGAAGTTAGTAGAATAATTGATAAGGAGAAAGATTCAATATATATTTTTAGCGTAGAAAGAGAACAAAATATTAAAAAAGAAATAATTGGCATAGAGAAGAATTATGATGATATTATATTATAACAAATATCAATATAAAGGTTGTGCAGTAAACCTCATTCTAAATTATAATGATTCCTTACTTCATTAATACTGATATACAAGATAATTTTTATAATAAATCAAAAAATTAATTGGGACTTTACTGCAGAAAAGAAAATTATAGCTCAGTATAAAAAGCCTAGGATCAATTAAAAAAGTACTATTGAGGTACTGCGAACATGTGG # Right flank : TTGCCTTTTATTGAAATTACATGCGAATGATGCAAAAGTCTATATAAAATAGCTTGAGCTAACATTGGAGTACCAAATATCTCTTTTGGAATACCTCCCGTTTGCTTAAATGCCGATATTAAACATTCAAATACATCTTGTTGTGTCTTTTCTTTCCTGTATTCAAAGTAACAGTATCTCGAGTATCCTAACTTGTAGCTAAATACATTGAATTCAAATTTTTCTCCTGTTTTCGAATATAGTTTTACATCTTCTTTCCAATCTCTATGAAGGTTGATTATGGTATGTTTTTGAATCAAGAAAAATTTTCAAAAAGGAAACATATGGGTTAGAAAAAGGAGAACCCGAGAATTTTATCTTTTAATAATTCTTACATAAAAATTGCTAATCAATTTATATATTTTTTGTTCTGTCGACCTATAATAAGGGTAAAACCTCGGGGATCGACAGAATTGTTATAAAAGTCACGATATAGATAAAATGAATGTTATAAGTCAACT # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.16, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTACCTTAACTATGTGGGATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 3 14411-15062 **** Predicted by CRISPRDetect 2.4 *** >NZ_AUPM01000060.1 Petrotoga sp. 9PW.55.5.1 c6_7_corrected, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================================= ================== 14411 30 100.0 37 .............................. AATGCTAATCATCCAAGATACGACGAAGAAACTGGGC 14478 30 100.0 36 .............................. ATTTTTTTAGCGCTGAACATTCACTGGATGCTGTAG 14544 30 100.0 35 .............................. TATTGGTTGGGATGGGATGAAGTAGAAAGTTTAGT 14609 30 96.7 39 ............T................. GTTCATATATTTTATCTACCTTTTCAAAGTCCCTAATGG 14678 30 100.0 36 .............................. GATGCATAAATAAAAACTTCAAAATTTACTTGCCGC 14744 30 100.0 38 .............................. CCCAAGAGCATTCAAAATATATACAAACGGCATCAAAG 14812 30 96.7 37 .............................T TCCGTTTTGCTTTCGCCATTCTCAGCAGCACCGCTTT 14879 30 100.0 37 .............................. ATAATGTCTCTTACTGATGCCAGATCCGTCTTATTCA 14946 30 90.0 57 ...........................GTG GGGAGAAAAGGAATGGAAACTTAGCAAGTTTAGATGAAGAAAAGTGGATAAAACTTT 15033 30 76.7 0 ...........G.....G..T.....TGTG | ========== ====== ====== ====== ============================== ========================================================= ================== 10 30 96.0 39 CTTTTTATCCTACCTATAAGGAATGGAAAC # Left flank : TCAAAAAACTCGATAGTTTTATCGTGAGGATTAATTTTAAATTCACCATTTAATCGAGAAAATGAAAACATCTTATAACAACGTTTTTTGTATAAATATCCTTGGTTATGAATGAATTTTCTATATTCAGCATCATTTATTAGTTGAAGAATAAAAGCCTGAATAATATGGTTATAATTTATTGGTAGTATCAATTTATCAAAAGAAAATTGAATATTTAGTCTGATAATTATCTCCTACCTTTTTTTATTAACATAGCTTTTATATTATGAATATATGATATCATATTATAAACAGAAAATCAAGTAAGATTAATTTTCTTAAAAAATATATGTACTGTAGACCTATAATAAGGGTAAAACCTCGGGGGATCGACAGAATAGTTATAAAAGTCACAATATTGATAAAATAGATGTTATAAGTCAATTTTACGTTATTTTAATAAATTGGCTTGACAATCTTAATTTTTTATGATATAGTATTTATAGTAGTCTTACGCC # Right flank : GCCCTTCACAGAAGGGGAATAGAACCGACTACCCCGTCTGCAGCATAAAATGCTGCATCCACCCCTTCAAGGAAGGGGAATTAAACCGACTACCCCGTCTGCAGCACAAAACGCTGCATCCACCCCTTCACANAAGGGGAATTAAACCGACTACCCCGTCTGCAGCACAAAACGCTGCATCCACCCCTTCAAAAAGGGGAATTAAACCGACTACCCCGTCTGCTGCCACACCCCGGCTGCGACAAAGAACGTCGCATCCACCCCCTCTCAAGAGGGGAATTTCTATTACATTTACCCCTTCACAGAAGGGGAATTAAACCGCTCTATTAGATTTGGATAAAGTAGGGGGGGAGTAGTCAAATACAAATAAGTATATGAATTGGGGTGAGATCGACAAAAAATATTAGAATTAAAACTAAAGCATGCTGTTAGCATGCTTTTTTTTATTTTATTTTGTACTTGATTGTTAAATTATGGTATAATATATTAATTTATATTTA # Questionable array : NO Score: 5.95 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:-0.10, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTTATCCTACCTATAAGGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.97%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-3.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //