Array 1 5987-6747 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJNNJ010000020.1 Cronobacter sakazakii strain MEZCS99 20, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5987 29 100.0 32 ............................. ACATACTATGAGAGCGCAGCGGGCGAGCGTAT 6048 29 100.0 32 ............................. AGGGGATGAATCACGCGTACCCGTGCCGTGTA 6109 29 100.0 32 ............................. CTTTCGCTTCAACAGTCACTGAGCCGTCAGTG 6170 29 100.0 32 ............................. TTTGTATATTCCACATCTCTTGGCGAGAAGAC 6231 29 100.0 32 ............................. TCTATTGAGCGCCCCTTGCGGGGCGCGCTCCT 6292 29 100.0 32 ............................. ATCACGCCCGGCCAGCGTGCGTGGGTGAAATA 6353 29 100.0 32 ............................. CCTGTATCGGAAATAACAACGATTTTGTCGTA 6414 29 100.0 32 ............................. GCAATCTGCAATAAAGTTCACTGGCTGTGCGC 6475 29 100.0 32 ............................. ATGACGTGTTTATGCTGGAGTTTGAGAAGCCA 6536 29 100.0 32 ............................. CAGCTAACGCAGGCGCGTGCGCGTCAAAACGT 6597 29 100.0 32 ............................. CCGAACTTTGTCGCGGTATTCGCGGGTTGTGC 6658 29 96.6 32 ....C........................ GCGGTGCCGCATGAGCAAAGAAGTCGAAAAGC 6719 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 13 29 99.7 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ACCGTGCTTGCCGCCGGTGAAATCGAACCGCCGCAGCCCGCGGCGGACATGCTGCCGCCCGCGATACCGCAAGCTGATTCGCTGGCGGAAGCCGGTTTCAGGAGCCGCTGATAAGCATGCTGGTCGTCGTGACGGAAAACGTCCCGCCCCGGCTTCGCGGACGGCTCGCCATCTGGCTGCTGGAGCTGCGCGCGGGGGTTTACGTGGGCGACGTATCGCGTCGGGTGCGTGAGATGATCTGGCATCAGATAAATGAGTTAGCGGAGGAGGGCAATGTGGTGATGGCCTGGGCCACCAATAATGAATCCGGCTTCGATTTCCAGACGTACGGCGTTAACCGTCGTATTCCGGTGGATTTGGACGGCCTGCGGCTTGTCTCGTTTTTACCGCTTGAAAATCAGTAGGTTATTCGCTCTTTAACAATGCGAGATTGTGAACCAAACGTTGGTAGAATGTTGTTGCGCGAAAAAGTGTAATAGATACAAGTATATAGTTTTAGA # Right flank : GTTATTGAGTAGAATCGTCTGCCTTGGTGGGTGCGCTTCGCTTACCCACCCTACATATAAACTGGCGGGCCTGCCCTTAACCGATCCACAAAAACTTCCCGTGCCAGCTCTCGATTGCGCAATAAACCGGCATACGGCGCGCGTTGGGTTGCAATCGCCAGGGGCAACAGACATAATGCGCCCTGCGCGTTTAACGACGCTCTCAATGGGGGCCCTGTTGGTTCTCCCGCAACGCTACTCTGTTTACCAGGTCAGGTCCGGAAGGAAGCAGCCAAGGCAGATGACGTGTGTGCCGGGATGTAGCTGGCAGGGCCCCCACCCATTTCTGCCCTAAGTCCTTTTTTCAGCTTTATCCTGGTGATGAAACATCATAAGAGGTGTATCAACTCATCCTGGATACGAGCGGCCTTTGGCTGCTAATATCAGGTGCGGTTATTTACTATAACGTTTATGTTTTCATTTATGAGCACTCAGAAATGGATAATTCACTCAGGCGATTA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 58250-59059 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJNNJ010000012.1 Cronobacter sakazakii strain MEZCS99 12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 58250 28 100.0 32 ............................ ACATTCTCCGCCGCCAGCGCGTCGCACTGCTT 58310 28 100.0 32 ............................ AAAGGCGAGCTAAATAAAGCACTGGCTCAATG 58370 28 100.0 33 ............................ CTGTTGTGCCACTACCAGCGAACGGATCTAACA 58431 28 100.0 33 ............................ TCATTAACACTTTCGTTCAGATGGGGGTTGAAT 58492 28 100.0 32 ............................ GTTACGACGCCGATCACGTCGAGTTCGTTTAG 58552 28 100.0 32 ............................ AGGATATCGGGCTAACCGTCGCTATCAAATCC 58612 28 100.0 32 ............................ GCAGCGGCTCCACCGAATGAACCGATTGATGC 58672 28 100.0 32 ............................ AGGGCCGGAACTGCCAGCTATGTTGACGGCGG 58732 28 100.0 32 ............................ ACAAGTGCCGGATACAGAGCCACGTAATGACG 58792 28 100.0 32 ............................ TTTAGCAAACGCCAGCAGCACGGCGAGCTGTC 58852 28 100.0 32 ............................ CGTCTTCGTAAATGCCAAATTGTCCGCCATTG 58912 28 100.0 32 ............................ AGCGGGTCGTTGGTGTGTTGCTGATTGATCAG 58972 28 96.4 32 ...........G................ GATTATTCACGAGCGGGGCGCTCTCACCTGGC 59032 28 96.4 0 A........................... | ========== ====== ====== ====== ============================ ================================= ================== 14 28 99.5 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CAGAAAAACAAAAACCGCCGTCAGGTCGGCCATGTCTTCCGCTTCTGATTCACTGAGCGCAAAACTGTTAGTGGAAAAGGCCAACAGACAGCCCAGAAACATTAGCCTGACTACTTTTCTCATCACGTCTACCACTCGCCAACCAATACCCAACGATAGCACATTTCGTTCAGGCGCGACGAGGAGATTTCTTGCCTTTAACGCGCGGATAACTGCCTGTTTCAGGCGATGTTATAAGAACATTATCGATAAGAAAGCAGCAGAAAAATCCCTCTATACGATACGGCAATCGCGCACGTTAACGCACCGAAGAGCAAACCACTGAACGAATGAAACGATAAAAGTGATGGGCGTTGCGCCTGGGCGTCTAAACCCTTTTTTATGCTCCGCTTGTAAGGCGTTGATTTTTAATGCGTGCAGTTGTGGTGATAAAAAAGGGTTTCAGGCGTTAAAAGCAAAAATTTGTTTTTAATTCAGGCATTCCGGTAATATTCGCTCCT # Right flank : AACTCCCAGCTACCCGCCGGGGTTGGATACGCCGTCCACTGCACACCCGCAGTAAAAAATTTTAAGCCCGAAGTAATGCTTTTATTATCGTTATATAAATAACGCCGCAATATCATGGGGAAATTATCTATAAAATTTATGGTTTCTGCTGTAAGAGCTTTGCTGGAAAATTCGCGCCAGATATTAATGCAGTGCTAATTAGCCGATATAACGGCGATAACACGTAAGAACCACATTAACTACAGACATTTGCAGGCTTATTGCCTGTCACAGGGTGTCGTTAGAGTAATCAATAATTATGTTTGATTGCAGATAATAGCGAAGGCCCTATAAAAATTGACATTTAGTGTCATTTATTAATAAAGCGCGGGAAATGAAAGGGATGTCACGGCATATTTAAAGGCTTAATAATAGACTCATCTCTTATTTATATTTCAAAGAAATATAAATACAGGAATCATCTAACGGAATGATGTAATGGACCGGAATGCCGTAACGCC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 68159-69927 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJNNJ010000012.1 Cronobacter sakazakii strain MEZCS99 12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 68159 28 100.0 32 ............................ TGCGCGTTTTCCGTTTCGATAACGGCTATTGA 68219 28 100.0 32 ............................ CCACCGAGGCCGCGCGTGCAGCCGCACCGGCA 68279 28 100.0 32 ............................ CGGAATAAAACCGAAGCAGACCATCACGTCAG 68339 28 100.0 32 ............................ GCTGATTCGCTGCCTGCTCAAAAATAGTCCGC 68399 28 100.0 32 ............................ ATCCCTGGCGAATTTTTTCATCCATCCATGAC 68459 28 100.0 32 ............................ ACGCTGGGAGAATGTGAAATGAAACGCGCGCC 68519 28 100.0 32 ............................ AACTAGGCAGGATCACCATGAAAGAGCTGCCT 68579 28 100.0 32 ............................ GCTGCACGACGCAGGAAAGCTTCCATGCCCGT 68639 28 100.0 33 ............................ GTCCCTCGCGGCCGCGCAGGAGCTGATGCCCGG 68700 28 100.0 32 ............................ AGTACGTAGCGGATAAATACCAGGTGCCTCCC 68760 28 100.0 32 ............................ ATACCCCGAACTTCTCAATCAGAGGAATGAGC 68820 28 100.0 32 ............................ TCCATCTTGTCCAGGCGCTTTTCCATCTCGTC 68880 28 100.0 32 ............................ ATCGCGTGTTGATGCTGGCCGCAGCATCTGCA 68940 28 100.0 32 ............................ AGGGCGCTCAGATTGCCGTCATATTCGTTCTT 69000 28 100.0 32 ............................ TGCACGCCGGCGTTTTGTTTAAACGTCGCGTT 69060 28 100.0 32 ............................ GGCATTACGCCGGGTGAGGTTAAGTTCCGCTA 69120 28 100.0 32 ............................ TTTGCTCTATCCTCGTCAGATAAGGAATAAGC 69180 28 100.0 32 ............................ ACGTCGTCAGTTTCAAGCTCACTGCGAAGGAA 69240 28 100.0 32 ............................ CGCTACCGTGTGCTTCATTCACCGCGCGAAGT 69300 28 100.0 32 ............................ TTGTTGTGCAGGCCCGCGAACGCCTCTGTGTT 69360 28 100.0 32 ............................ GCGAACAGCAAACGGCCCGGAAACACCTCATT 69420 28 100.0 32 ............................ GTTTTAATGCCGAAGAAGGCACGGCTGACCTT 69480 28 100.0 32 ............................ TCCGGCGTTCGGTTTGCGGCGGTATCGTCCCA 69540 28 100.0 32 ............................ GTTGTGGTGAATGCGCAGGCTGATGCGCTGAT 69600 28 100.0 32 ............................ TCAGAATGGCCCAGCGATGACGGCTACCGAAG 69660 28 100.0 32 ............................ GTACGACCCGCAGATTGCTGAGTACGAGCAAA 69720 28 100.0 32 ............................ AGCGCTGCTATCAGCTCAAGAACGGCAGCGGG 69780 28 100.0 32 ............................ AATGGGGTCATTATCGGTTCCTCCGTGATGCC 69840 28 96.4 31 ......................A..... TCGAACACAGCGACGCCGTTCCCGTCGCCGC 69899 27 92.9 0 ........................-..T | T,G [69919,69922] ========== ====== ====== ====== ============================ ================================= ================== 30 28 99.6 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CGGCGCTGGCGGAATTAGAGGCCATGCGCTGGCGGGCGGGTTTGCAGGATTACTGCCAGAGCAGCGCGATATTACCCGTGCCACAGGTTCAGGGCTGGCGCACCGTGACGCGCGTACAGGTGAAAAGCAACCCCGAACGCCTGCTGCGCCGCTCGGTGCGTAAAGGCTGGCTGACTGAAGAAGAGGCGCAGCAGCGGCTTTCTGGTTTACAGGTGCAACAAACCGCGCTGCCCTGGATTCAGGTTAAAAGCCTCTCCAGCGGCCAGCACTACCGGCTGTTTATCCAGCACGGCGCACTTCAGCCCACGCCCGTCAGCGGCACCTTCAGCAGTTACGGGTTAAGCGCCAGCGCCACCATCCCCTGGTTCTGACCCTTTTTAAATACGTCTCGCTAACCTGTTGATTTTTATAATGGGTTAGTGAGGCGTTGAAAAAAGGGTTTTAAGAAGTAAGCAGCGTTTATATTTTTATAAACAATGGGTTAAGAATTTTTGTCTTCA # Right flank : TCACAGCGAATTCCCTCGCCGTCACACTTGACCTTCCTGCAAGGGGAGGGTTTAAGCTCAACGGGTGCACGTTGACGATAAGGACGGGAAGATGCAACGCCGAGAGTTTATCAAGTACACCGCCGCGCTGGGGGCGCTCAGCGCGCTGCCGACATGGAGCCGGGCCGCATTTGCCGCAGAGCAACCCGCGCTGCCTATCCCCGCGCTGCTGACGCCGGACGCCCGCAGCAGCATTCAGCTGACGGTTCAGGCGGGTAAAACCGCGTTTGCCGGTAAAAATGCCACGACCTGGGGCTATAACGGCTCGCTGCTGGGCCCGGCGATTAAGCTGCGCCAGGGCACGCCGGTCAATATCAATATCCGCAATAATCTCGCCGAAGAGACCACGGTGCACTGGCACGGTCTGGAAGTGCCGGGCGCGGTGGACGGCGGGCCGCAGGGAATTATCGCGCCGGGGCAGACGCGCAGCGTAAGCTTCACGCCTGAGCAGCGCGCCGCGA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 7960-7380 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJNNJ010000009.1 Cronobacter sakazakii strain MEZCS99 9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 7959 29 100.0 32 ............................. CCAGCCAGCCCCAATGTGTCGATAAAAAGTGA 7898 29 100.0 33 ............................. CACACGGCGGCACAGACGCACTGAGCAACCTGC 7836 29 100.0 32 ............................. CGGGTGTGCCTTTTGGATGTAATTTCCACGAC 7775 29 100.0 33 ............................. CTCCGCAAACTGAAACGCGACCGTGAAGTGGCG 7713 29 100.0 32 ............................. CCAGATAACGTTAGAGATGGTGCGCTAATGCA 7652 29 96.6 31 ............................A TACGCCCAGGCGTCAGACGCATACAGGCTCG 7592 29 96.6 32 .C........................... AAGCAGACAAACTGGAAAGTTGTTATCTGGAA 7531 29 93.1 32 .C..........T................ ATCGCCAGTATTTTCAACGTGCCGGCGCACAT 7470 29 93.1 32 .C.................A......... TACTTTGAGAAAACCGCGCAATCTGTGCTGGT 7409 29 79.3 0 .C...........C...A..A....C..T | T [7382] ========== ====== ====== ====== ============================= ================================= ================== 10 29 95.9 32 CTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ATGAAAGCTTCAAATGGATGATGGCGAACAACATCGCGTTTATCGTCGCCAACATCAATATCAACTACCGTCGGCCTGCCGTGCTTGGCGATCTGCTGACTGTGACGAGCCAGGTGAAGCAGCTTAACGGTAAAAGCGGGGTCTTAAGCCAGGTCATTACGCTTGAGCCGGAAGGCGAAGTGGTCGCCGATGCGCTGATCACCTTTGTCTGTATCGATCTGAAAACGCAGAAAGCCTTACCGATTGAGGGCGAGCTGCGTGAAAAACTGGAAAAAATCACAGGGTAAATTCTGCAATAGTGGCGCTTGTGCTGGCAATCATGGATTTATCACCGCACAGGGTGAACAATCCGGTAGATGTTAACAGCCCACAAGCGTCGCGAAAAAACGCCTTCAAAATCAACAGGGCAGCCGTTCTTTAACAAGATGGGTTGTTGTAAAAATGTTGGTAGGATGTGGAAGGCGAAAAAATGCCATTCAGTACAGAGGGTTACCGTTAGT # Right flank : CCCGCGTTCTTCGCGCCTGTCAATCGCCGCCCTCATTCCCGCCACAATCTTCAGCAACGTTTATACTTCAAAGCCCTTGTTAAAATTTGAACACTGCGCAACGAAGGAGAGGCTATGCGAGTACACCATCTCAACTGCGGTTGTATGTGTCCTTTGGGCGGCGCGCTGTACGATGGCTTCAGTAAAGGGCTGCATGCGCACCTCATCTGCCACTGCCTGCTGATTGAAACCGACCATCACGGGCTGGTGCTGGTGGATACCGGCTTTGGCTGTGACGATATGCGCCATCCGCGCCGCCGTTTACCACTCTTTTTCCGGGCGCTGAATAATATCCAGTACCGGGAATCATTAACGGCGCTGCACCATATTAAAGCGCTCGGCTTTAAGCCGGAGGATGTACGGCACATTGTGCTGACGCATCTGGATTTCGATCATGCCGGCGGGCTGAGCGATTTCCCGCAGGCGCAGGTGCATCTGATGCAGCGTGAAATGACGGCTGC # Questionable array : NO Score: 5.98 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.60,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //