Array 1 43356-42388 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCIH010000019.1 Longicatena caecimuris strain DFI.2.52 GHNFJGKK_19, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================================================================================= ================== 43355 33 100.0 33 ................................. ACCTGTACGCTCATCTGTTAACTCAATTTTGTG 43289 33 100.0 35 ................................. CATCATTGGCAAGTATTAAGCACTTCCCAATTTGC 43221 33 100.0 35 ................................. ATTTCAAACTTGGTTAGGTCAAATCAAATTTAAAG 43153 33 100.0 34 ................................. AAATGACGCTGTATTTATCGATTATTATACGCGT 43086 33 100.0 34 ................................. TCATACCATTCGGGTAATGTCTTTGGTTTTGATA 43019 33 100.0 34 ................................. CCGACGTGAAGACAATTTTTCATCGCATGAATCG 42952 33 100.0 34 ................................. TTTTATAGTGGTTGATTGTTGGTTAGTTGTTGGT 42885 33 100.0 34 ................................. ACCCTTTAAACCGGTCATTTTACTGTCAACATCA 42818 33 100.0 34 ................................. CATCTGTCTAAATACATATAAGTCAGTTGCTATC 42751 33 100.0 36 ................................. TTTTTGTTTAATGATTTAAAGATAACTTCGATAATA 42682 33 100.0 34 ................................. ATGAATATATGGTAGGTGATAAATATGAACAACT 42615 33 100.0 32 ................................. GGTAATTTTGGAGATATTGAAATCTACGACCA 42550 33 97.0 97 ............................C.... AATTTTAATTGTTCATACGTGTTGATCTGCAGCTGTCGTACCTCTTGTACGAGAGTTGAAATAAATTGTATATGTATACTGCGATCTCCCCGGTTCC 42420 33 93.9 0 ............A.......T............ | ========== ====== ====== ====== ================================= ================================================================================================= ================== 14 33 99.4 39 GTCGTACCTCTTGTGAGGTACGTGAGTTGAAAT # Left flank : AGGTGATTTAGATGAATATGCACCATTTTTGTGGAAGTGATGATTATGATGGTATTAATAACATATGATGTGAATACAGAGGATAAAGCTGGGAGGAAACGTTTAAGGAAGGTAGCTAAGCATTGTTTGAATTATGGATTGCGAGTACAAAATTCAGTGTTTGAATGCAATGTAAATCAAAAAGAATATGTTGAATTGCAGCATGTATTGTCTACTGAAATCGATGAAAGTAAAGACAGCCTACGCTTCTATCTTTTAGGGAATAATTATAAAAATAAGATTATTCATATTGGAGCAAAACCAACATTCGATGTTACGGAACCTTTGATTTTTTAAATGTTGGTGCGAATGTGAAGCTAACATAAATTTCCTAGGACATTCGCACCTATTTTTGATTATTTTAATTGGATTTTTATGCTTTTATTTGATAGAAATTTAATTTTTATGTTAATTTAATGCAAATATTGTTACTAATATCGAGATTAAAAGCAATATTTGCT # Right flank : TATTGATTTTAGATGAAAAATTATTGAGGATAATCGGTCGTACTTCTTACGAGAAATTCAGATGTCTATATGTAAGTATTTACAAATAAAAAAGGCAAATCCTCTTTGGATTTACCTTCCAAATAACGTATTAATCTGCCTTTTCTGTAACATCCTTCATCTTCTGCAAACCAAAGATAATAAGTCCACCAACTACAAACCATAAAATATCAAAAGAACTAAAACTCAATGGTGCTTTTGGTGTTGACAATGTTTGTGGTCCCATGATGATGGCATAAAAAGAACCAATCATCATACCGATTATCAGAAATATCATAATCGAACGATGTTTATCTAAAGCCCATTTGATAACCCGCACTACTGAAACAATTCCCGCTAAGATCCCCAATGCAAAGACAATCAGGATTGGCAGATAATCTAAGTTAAAGCTAATCACCGCTTTAACAGCACTTATGATAGGAACATAAAGTCCGAAAATCAATAATAAGGTAGAACCACTG # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.40, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTACCTCTTGTGAGGTACGTGAGTTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.55%AT] # Reference repeat match prediction: R [matched GTCGTACCTCTTGTGAGGTACGTGAGTTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.90,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 7152-6460 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCIH010000002.1 Longicatena caecimuris strain DFI.2.52 GHNFJGKK_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ============================================================================================================================================================= ================== 7151 33 100.0 32 ................................. GCAAGCAATAGATTGGAGTGATGAAGATGAAT 7086 33 100.0 33 ................................. GCTCATAACCCTGTCGACGAGTCCTGAATGCCA 7020 33 97.0 37 ......................C.......... ATCGCTAGAGTTTGTTCCACCTTTTATCTTTAGTCCT 6950 33 100.0 36 ................................. AACCTTTACTTTTGCTTTAGCAGGAGTTTTTAGCTC 6881 33 97.0 34 .......T......................... GATTTAACGAACATCATAAACCAAATGAACAAGT 6814 33 100.0 33 ................................. GATACCTTTCTGCAGCAGGTAGATGATCTACAG 6748 33 100.0 35 ................................. GACCATTTTTTGAAATAATCTTCCAGTACGCTGAT 6680 33 100.0 157 ................................. GAAGTAAATAAAGCAGATGAAGTTATCAGCGAAGGTCGCATCTTGTAAGAAGCGTGAGTTGAAATGATAAAGTATTCGATAGAGCACTCTATGAGAAACGCCGCATTCGCGAGATGTGTGAGTTGAAATTGAATCGTACATAATTATTTGTCAAAGT 6490 31 90.9 0 ....C.--......................... | ========== ====== ====== ====== ================================= ============================================================================================================================================================= ================== 9 33 98.3 50 GTCGTACCTCTTATGAGGTACGTGAGTTGAAAT # Left flank : CGCTTAGAGGCAGTGCGTGAGGCGGATGCGATCTTGCGTGAGGAATTCCATAATGCAGGATTGGATAAAAAGGTTTGGCAGTATTTCACAGTTGTTCCTGATTTTAAATCTGTAGGTGTACGTGATAATGCGAGATGTTTTGAATATCCTGTGATTTTACGTGCGGTGAATACGGTGGATGCCATGACGGCGACGATTGAGCAGATTGACTGGCCGGTATTGTTGAAGATAACGGATCGTATCTTGAAGGAAGTTAAGAATGTGAATCGTGTTTGTTATGACCTGTCACCAAAACCTACGGCGACCATTGAGTGGGAATAAATTTAACTATTTAATAAGTTGGTGCGAATGGGAAGCATACATAAAAAAGCTAAGAGATTCGCACCAATTTTTTTGTATCATATGTTGTAATTTATAGAAAATAATTGAAGAAGTATTAAGAAAGTATATAAAATTTATACATTTCTTCTTTAAATGGTATGTTTTACATGAAGATTTGC # Right flank : GTTGCATTTGGATTCATGTAAGTTATAACATTTATACAAATGTATAATTTCCTCTTCATTAAGATTTTTAAGGATTAGTAACACCATCGGCATGCACATGAATCCAAACACACCAAATAATTTACCACCTGCATACATACATAACAGCATTAACAAAGGATGCAGTCCTAACTGCTTTCCCATTAATTTAGGTTCTACTATATTACGTATTAAAGTAATAATTAAATATAATATTAATAATCCTATGGCTAGTTTATGTTGTCCTTGAACATAAGAAAACAGAATCCATGGTATCATAATACCGCCGGTACCTAATATTGGAAGTACATCAAAAATCGTTATGCCTAAGGCTATTAGCCAGGCTTTTTTTATATCTAAAATAGAAAGACCTATGACTAATTCAAAGAATGTTAATAGCATTAATTTGATTGTAGCTATAAACATGTTTAAAAAGGTATGAGTGGCAAAATAACGTATAGATAATATGATTTTTTGTGTTT # Questionable array : NO Score: 4.61 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:-1.55, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTACCTCTTATGAGGTACGTGAGTTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.58%AT] # Reference repeat match prediction: R [matched GTCGTACCTCTTGTGAGGTACGTGAGTTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.90,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //