Array 1 55866-55559 **** Predicted by CRISPRDetect 2.4 *** >NZ_WWVX01000007.1 Bittarella massiliensis strain BIOML-A2 scaffold7_size209855, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== =================================== ================== 55865 34 100.0 34 .................................. AATATCGTAAAAGAGTTAAGCAAACAATGGTTAC 55797 34 100.0 35 .................................. ACTTGTAAAATACGCAACTTGCGCAGATACCCCGG 55728 34 100.0 33 .................................. GCTTGACTTGTCCGAATGGAACGTGTATTATAA 55661 34 94.1 35 .........T.......................T CACTTCGGTGAGCCAGTCGCTGAGTGAATCGGTCA 55592 34 91.2 0 .........T......................CT | ========== ====== ====== ====== ================================== =================================== ================== 5 34 97.1 34 GTCGTCCCCCCACGCAGGGGACGTGGATTGAAAA # Left flank : CAGGCGCCGGTCCACTTTCTGGTCATCCCCAAAGCCCACATCGCCAGCTGCGACGAGCTGACCGAAGAAAACAGCGCCATTGTCGCCCACATCTTCGCCACCATCGCCAAGCTGGCGGGGGAGCTGGGGCTGAAAGACGGCTACCGCATCGTCAACAACTGCGGCAAAGACGGCGGCCAGACGGTGGGTCACCTGCACTTTCACGTGCTGGCCGGCCGCTCGTTGGCCTGGCCCCCGGGCTGATTGCCCTGCCCTTGCATATCCCTCGATTCAAAAGAGCTGGACGCGTCTGCGTCCAGCTCTTTTGCGCGCTTTTTACCCAATTCGCGGGTGCGAACCCCAAGTGCACACCCATTTGCCGGGAGGTTCGCACCGCAGAATACCGGCCTTTTGCGGTGGAATGGAGAGGTTTGGGAAAAATGGGATCTGCATTTGACAGGATTTTGTGGAAAGAGTATCCTAAAGAGGAAAGCAGCGTCTTGTTTTTGTGCTGTTTTGCT # Right flank : GGTATGTCCATGAAATCGCATGACCCCTCCCAGCGGATCGTCCCCTATTCGAGGACACAACCCAAAACTTTAGCGTCTGCACAGACACAGCCGCTGTGCAAACTTCCTATTCCAAAGCGCAACGCCCCACATACGCCTCACAACAAAAAGGAGCCGGAGCAGCACCTGCTGCTCCGGCTCCCTCTTTTTATCCACTTGATCTGTCAATTGAAGTTCAGACGATGACATTGCGGGGCTCTCCCCGGCAGAAGGCGGCGATGTTTTCCCCCAATAAGTCGACAAGGCGCTGGCGGGTCTCCAGCCCCTTCCAACCCATGTGGGGGGTGAGGACCACGTTGTCCAGGGTGTAGAGCGGGTTGTCCGGCCGGGGGGGCTCCTGCTCCAACACATCCAGTCCGGCCCCGGCAATTTGTCGGGCGGCCAGGGCCCGAATGAGGGCGGGCTCATCGATCAAAGCCCCACGGGAGGTGTTGATGAGAAAGGCGGTCGGTTTCATCTTG # Questionable array : NO Score: 8.91 # Score Detail : 1:0, 2:3, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCCCACGCAGGGGACGTGGATTGAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.40,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : NA // Array 2 111898-111664 **** Predicted by CRISPRDetect 2.4 *** >NZ_WWVX01000007.1 Bittarella massiliensis strain BIOML-A2 scaffold7_size209855, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 111897 33 90.9 32 .........TA..C................... AACTGCCTCCAAAATCGTTGTATGAGACGTAC 111832 33 100.0 34 ................................. TGTCCTCGAAAATGCGGTAGTGGTTGCCGCCGGC 111765 33 93.9 36 ............A...................C TTGTAGGCCGACGCCTTGTCCCGGTAGCTGATGGAG 111696 33 78.8 0 ..........A.AC.......C.AC.......C | ========== ====== ====== ====== ================================= ==================================== ================== 4 33 90.9 34 GTCGCACCCCGCGTGGGTGCGTGGATTGAAATA # Left flank : ATGGCGGCTGTGGCCCTCTACACTATCCGCCGCCGGCGCCGGACCGGTGCGGATGCCGAAAGGGTGGGGGACGAGCGCCCCGGTCTCCTCGGCAGGGACCTCTTCTTTTACAGTTTGGTCTCCGCCCTGGCAGCCCTGCTCTACCTGCTGCGGGGCTGTGCCCTCGACGGCATTGCCCTGTTGGCCGTCGCAGCAGTCGTTGTCGCCAGCGCCATTGCCGTCTCCCGGCGAAAGGCAGAGGGGGAGAGCGAGCACTAGTTAAAAAGGAGCGCCTTTTAGGCGCTCCTTTTTTGCGGACTGGGGCTTTTTCACAATGCTACGTCTCCCGGTGTGAAGGGCAAGCGAACAGGATTTTTCCAAGACCTTTGCACCGCGTGTGGGCAGTTGCAGGGGAGGAGTGATAGCGACAAAAGGGGACTTGTCGCTGCAAATTGACAGTATATTGGGGAAGCGGTATAGTAAAAAAGAAAGAGGATGAAGCGTTTTTGTGCTTTGTTGCT # Right flank : CTCCCCAAGCACACTCCTGTCACCGTGGGTACATGGATAAACTTTCTAAGAAGTAGTAATCACGGCGACGAGACGGTTTGCCGCATCCCCCCGCGCCCTTCAAAACGGCGAGAACCCCACATTTGCGCGCAGCCCCACCATGCTGCCACCCCTTCCGCCTGAAAGCACCAACCGAGTTTTTGCCTCGCACGAGAGGAGTCGGCATAGAGGGGTTGCCCCACTTGCCCACCCAGCTCAAAGGGGGCAGGCCGCTTGCCTTCGCACCGTGACCAGGTGCGGGTGCAGAGAAAAAGAGCCCTCCGGCCGGAGGGCTCTTTTTTACAGCTGTGTGAAGATCCGCGCGCCTTTTGTGTTCAGCCACCCCCATATCACCAGGCAGAGGAGGACGGCGGCCGCAGTGGCCACAGCCGTGACCAAGACCATGGACAGGTGCAGGGCAAAACCGAGGCCGATGAACGCCGCGGCCAGAAGGGGAGTGGTGAAGTACCCCAAAAAGGAGG # Questionable array : NO Score: 3.60 # Score Detail : 1:0, 2:3, 3:0, 4:0.55, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCGCGTGGGTGCGTGGATTGAAATA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTGCGTGGGTGCGTGGATTGAAACA with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.30,-6.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [5-5] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [53.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,9 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 155491-155856 **** Predicted by CRISPRDetect 2.4 *** >NZ_WWVX01000001.1 Bittarella massiliensis strain BIOML-A2 scaffold1_size720995, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 155491 33 97.0 34 ................................T TATGCCATTTTGTGGGATAGCAGCCGAGAGGCTG 155558 33 100.0 32 ................................. GTCTGTGTGTTGCGTATCCATACATAGAAAAG 155623 33 100.0 34 ................................. AACTAGCCTGTGGAGAAAGAAGGGGGTTCGTACC 155690 33 97.0 33 ................................C CCAAATCATCCACACAAATATAGTCCCAGTAAT 155756 33 84.8 34 ..........G..TA.....G...........T ACTCATTGGAGCATGAGAGGGAGCTTCGCGTCTT 155823 33 69.7 0 ....T......T..A.....GACC..A....CT | C [155851] ========== ====== ====== ====== ================================= ================================== ================== 6 33 91.4 34 GTCGCACCCCACGCGGGTGCATGGATTGAAATA # Left flank : CGAGTATACCGGCTTGCGGCCGGGCGAGAAGCTCTATGAGGAACTGCTGATGGACGAAGAGGGGATGAAAGAGACCCCCTACGAAAAAATCTTCATCGGCCGGCCGATCGATATCTGTCCCGACGACCTCTGGCGCTCTCTCGACGAGATGCGCCCCCTGGCGTACAGCAACCAGCCGGACAAGGTGATTGCCGAGCTGCAAAAAATCGTGCCCACCTTTACCCCTACCCCCAACAATCACAGTTGAGAGAAGAGCGGCTTGCCGAAGAGATGTCGGCAGGGCCGCTCTTTTGCGTCTGGGTGGAGAGCCGGGAGAAATAGAGACTTTGGTGCGAACCCCAAGTGCACAGGGATTTGCCGGGAGGTTCGCACCAAAAAATATCGGCGTATTGCCGGGGAAAAGGGAAAGGCGGCGGATAGAGGAGATTGATTTGACAGGGTTTTGTGAAAAGGGGTATAGTAGAAGTGTAAATTGACACTGGTTTTTGTGCCAATTTGCT # Right flank : TGCGCTTGTGCAACTGCCCTTCCCTTTTTGTCCCCCAACAAAGAGGGCCCCCGGGTATTCCCGGAGGCTCTCTTTTTACTCTATGGCATCAAAAGGTGATTATCCTTCGCCGCCGTTCTGGTTTCGGGTGCGCTGGATGAGATAGACGGTGGACAGCAGCAGGCTAACCCCCAGAAGGAGGAGCGCCGCCAAATCCCAGAAACAGGCGGCGTGGACGGCGCAGAAAACGGCCGCAGCCGCCAGGGCGGTGAGGACGACAAAATCACAGGTTTTCACGGGCTTTTTCCTCCTCTCTGTCCAGTTGGCGCTTGCGCGTCAGGAGATAGGCCAGGGCAATTGCCATCAGCACCAGCGCGAGCCAGTGCACCCAACAATCCGCCGGCTGCCGGTGAGCGTGGCCGCTCAGTTCGCCGGTATAGGGCCCGCTGCCGGCAGAGTTCTGCCCGCTGTCGGCGCCGTCGGAGACGATGTCGCTTCCCTCCACCTGTCGCTCGGTGAGG # Questionable array : NO Score: 5.52 # Score Detail : 1:0, 2:3, 3:0, 4:0.57, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCACGCGGGTGCATGGATTGAAATA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCCTCGCGGGTGCGTGGATTGAAATA with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.00,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 583161-582933 **** Predicted by CRISPRDetect 2.4 *** >NZ_WWVX01000001.1 Bittarella massiliensis strain BIOML-A2 scaffold1_size720995, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ========================================== ================== 583160 26 100.0 41 .......................... ATGGAGCGGATGTATCAGAGGGGCTTTTGCCGGGTCTCCTC 583093 26 100.0 41 .......................... TGGCCCTGGATGGCCCCGCCGGTGTCTTGCACCGTCTCCCT 583026 26 92.3 42 ...A..C................... GAGCTTGACCGTCGTCGCACAGGCCGCGACCCCCGTCTCCCC 582958 26 88.5 0 .......G......A...T....... | ========== ====== ====== ====== ========================== ========================================== ================== 4 26 95.2 42 CTCGCGTAGGGGGAGTGGATTGAAAT # Left flank : GTGCGCCGGGCGTCGGCCTGGGCGAGCGGGCTCCCCGACATGTCTTTGGCGCGGGAAGGCGGCGGGACAGCGTTCGCCAGACACCCGGTGACAAGGCAATCACACCTGTTGCGGTGGAGACTGTTGGGAAGGGGCCTTTCCCCACCCCGGCAGTTGTTTTGGCGGCTGCTGTCGGGGGGAAGGGCAACGTTTCATGCGCGTCCCCTCCCCTTCCCTGGGCTGAAGTGGGAAGGCGGCTGCGCGAAGGAAAGGGAAGAGGGCTGGGCGGCGAGTGCCCGGCTCTTTTTCTGTGGCAAGGTCGTCTCCCCTTGCGCGGCGGGTGCGAAGGGCAAGCAGACAGAAAACGCCCGGGCCCTTCGCACCGGGAAAACGCCAAAATCAGGGCGAAAAAAGGGTCGCTCAAGGGGTAGGCGGACAGGGCGGTTGACAGCAGATTGGGGAAGTTGTATGGTAAAGACAATTAAACAGTCTCCTTTTTTGGAGATGTTTGCTGTCTCCTC # Right flank : CAGAGGTTGCTGTTGGCAACCAGAGTAGGGGTGTAGTCTCTCCTCGCTCGTGGGAGTGGGCATTGGCTAAAACCCGCTGCCTTGCGGCCCTCTACTCCCGGCTTTCAAGTCCTCTTCTGTCTTGAAAAAGTGGGTGGCAATCGGGCTCTCGGTGGCGCGCCCCTCCCCGCACAAGAAGGGCAACTCGCATCGCGGCTTTGGCCTCGGCGCTTTTGACGGTTTCGTCTTCCCCCTCCCGAGGAGCGATCCCGAGCTGCCGCTCCAAGGCCGGTGGGCGGTGCCGCGACCCCCACCATCGAAAACACCCACCAAACCCAAAGAGAGAGGGGAAACAAGCCGTTTCCCCTCTCTCTTTTTGTCGGCAGCCGGCCCTAGTCCACCACGCCGGGGGTGCGGCCGATGCCCACCACCTCGCTGACCAGGCGGCGCCAGGTGGCACAGCCGACGATGCCGTCGGCACTCAGCCCGTTGCGCCGCTGATAGTTCACCACGGCGGTGCG # Questionable array : NO Score: 5.62 # Score Detail : 1:0, 2:0, 3:3, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCGCGTAGGGGGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.18 Confidence: HIGH] # Array family : NA //