Array 1 438-43 **** Predicted by CRISPRDetect 2.4 *** >NZ_JZQV01000210.1 Escherichia coli strain HT2012DB21 scaffold_336.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 437 29 96.6 32 ............................A GGAACTGGCGCTGCTGGAGCAAAACCCGGTAT 376 29 96.6 32 ...........A................. AAAAGGGCCGCATTGACGGCCCTGTGTTATCG 315 29 100.0 32 ............................. TTAGCTGTTAGCCAAACATGTCGACCTGTTTG 254 29 100.0 32 ............................. GGGTGGCGGTGGTGCTGTAATTCACACCGGTA 193 29 100.0 32 ............................. TATTCCCCCAGTCACCCCCGCCACCAAAATCA 132 29 100.0 32 ............................. ATTTTTCAGACTCATCAAAATAATCCTTTAAT 71 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 7 29 99.0 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : GCCGTCAAACAGTATCACCGCGTTAACGCCCGCGAGTTCCCCG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 40343-39397 **** Predicted by CRISPRDetect 2.4 *** >NZ_JZQV01000209.1 Escherichia coli strain HT2012DB21 scaffold_336, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 40342 29 96.6 32 ............................T CTAAAATAGAAATTATTCACGGGGATGCTAAT 40281 29 100.0 32 ............................. TGGCAGATCGATTTTACCGCCAGAATGACAGG 40220 29 100.0 32 ............................. ATTAAGGCGGACGAGGAAAAGGCAGACGTTAC 40159 29 100.0 32 ............................. GTCCATGGCCTGACGAAGCTCGTAATATTTTG 40098 29 100.0 32 ............................. ACGACCAAATGATCTACGCGTATTGCCACCTC 40037 29 100.0 32 ............................. TTAGGCACAGAAAAAAGGCTACTCAGCGAACT 39976 29 100.0 32 ............................. TATCGACCCCCTTTCTCACGCATCGCCATCGT 39915 29 100.0 32 ............................. TTAACGTCTGGATCCTGTGTGCCATGGACCGT 39854 29 100.0 32 ............................. ATCAGGTAATCGAGACACCTGTCAGCACTCTC 39793 29 96.6 32 ............................C CCAGCGCCAGACGGGAACACAATTTTAAAGCC 39732 29 100.0 32 ............................. TTGTCGGGGATCTGTTCAAACTGACTCATTAG 39671 29 100.0 34 ............................. GGGGCGCATTAACAGAGAGAAAAACGCATAGGCC 39608 29 100.0 32 ............................. CAGCTCGCAGCGCTCGGAACGTGGCGCTATAG 39547 29 100.0 32 ............................. TCGCTATTGCCGGTAGTGTCGCTGATAGACTC 39486 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 39425 29 96.6 0 ............T................ | ========== ====== ====== ====== ============================= ================================== ================== 16 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCCGGGAAGGCAGGTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 66928-66045 **** Predicted by CRISPRDetect 2.4 *** >NZ_JZQV01000209.1 Escherichia coli strain HT2012DB21 scaffold_336, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 66927 29 100.0 32 ............................. ACACCTCTACTGACGTTCCTGAACAAGAAGAT 66866 29 100.0 32 ............................. CTCTGTCGTTTTCATATTACCGGCCTGCCACT 66805 29 100.0 32 ............................. GCCAGGAATGCAGCATTTTGCATGGGAAATGA 66744 29 96.6 32 .........T................... CCGATATTTTCCTGACGTCGAAAAAAGAGGAC 66683 29 100.0 32 ............................. CTGGGCGAGGGAGAAACGCCAGCGGAGCAGTA 66622 29 100.0 32 ............................. GGATCACAAGGGCGGCTATCAGGGTGGACGGA 66561 29 100.0 32 ............................. CCCTCCAGTACTGTGATGCGATCTTTAAGTCC 66500 29 100.0 32 ............................. ACTGGTTCTGTAACCCAAATTTGGGATCATTC 66439 29 100.0 32 ............................. ACTATCGGCGCTGTTCAGTTGGGACAGAAACA 66378 29 100.0 32 ............................. TTATCGCACCGTGTTAAACCGGCAGAAAAACA 66317 29 100.0 32 ............................. CGTGCCTTCGACTTTGCGGATCACGTCGTCTT 66256 29 100.0 32 ............................. ACGGGGACGAATCACAGCAGCGTTATCGTGAT 66195 29 100.0 32 ............................. AAACCGGACGAGGGCGCGCTAAAACGTGATTA 66134 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 66073 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 15 29 99.5 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GCGGGGATAAACCGCCACACACGTCGAGCTGGTGGGGGTTAATGC # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATATTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //