Array 1 493385-492946 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB851138.1 [Clostridium] bolteae 90B8 acBSf-supercont1.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 493384 33 100.0 34 ................................. TGGCCCTGCAGTACCTGCATGTCTTTGGGGCGGG 493317 33 100.0 36 ................................. AAAAGTGCCTGCATACCATCATGGAGGGCCGCTGTC 493248 33 100.0 35 ................................. AAGTACAAGTTCATTATCATCTGTGATATGAAAAT 493180 33 100.0 34 ................................. AAAGAGCGGTTTAACCGGACGGGGTGAGTTGTAT 493113 33 100.0 35 ................................. GTATATGATGATTGCCATTGGATTAATGGCATTTG 493045 33 100.0 34 ................................. CTCCTCGTCCTCCTCGTCCGGGTCGTCTAAATCT 492978 32 75.8 0 ............A.A.-..A..CAA.C...... | G [492949] ========== ====== ====== ====== ================================= ==================================== ================== 7 33 96.5 35 GTCTCCGTCCTCGCGGGCGGAGTGGGTTGAAAT # Left flank : TGCTGATACTGATTACATATGATGTGAATACGGAAACCGCTGCAGGCAGGACCAGGCTGAGAAAGGTTGCAAAGCAATGCGTTAATTACGGCACCCGCGTCCAGAATTCTGTATTTGAATGTATTTTGGATAATACCCAGCTGATAAAGCTAAAAGCCATACTGACAGATATCATTGATGAGCAGACTGACAGCCTTAGATTTTACAACCTGGGAAATAAACACACTACAAAGGTTGAACATGTTGGGGTGAGTAAAGGGATTAAAGTGGAAGAGCCGCTGATATTCTGACCTGGCTGCGGGCGGTAAGGAGGTTTCAAATAGTTTGGTGCGAACCTGAAGCAAACATGAATTTACGGGGGGATTCGCACCGGAAAAACTGCACAGTGAAAACGGCTTTGGATGTGTGCAGGGTAGGTTGGCGGTGATTTGAGGGAGTATGATGTGATTTGATTGTGGAAATGTGATGAAGAATTGTTGGTTTTTTTGTGTAGTATTGCT # Right flank : CCGCCAAATTCAGGATTACGTTTAGTCAAAACATCATTCCCCTTTTTCTAAGAAAACAGTATAGTTTGAATCATAAACATTAGCTATAACTAACAACACGCAACAAGAAAGGTGGGCGAACACCCACCTTTGCCATAAAACTGTTATAGGGTATAAAGAACGCGGGCCTCCCTCACCCTTTCCATGCCCGAATCTCTCTAAGCCCCGGCACCAGAACCTTGGCGCTGGTTTCCAGAATAATCCGTCCTTTTTCAGCCGTGGCGCCTGACGGGTCTCCGCCGATTCCTATGGGTTTGCCGTCTGCTGTTTTCCAGTCCTCGGACACCCAGCCAATGGATACGTTTCCATAAGGCCTCAGTGCCTGATTGTCTTTAAATGCAGTTGGAATTCCTGCCTCTGAGGTATCTAACTTTACCAGGGACGGGTCCACGGCCATGACCATGGAGGTTTCCATCTCGCCTCCATGGAAGTCCCAGATATTTCCCTCTGAAATGGTGGCC # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCCGTCCTCGCGGGCGGAGTGGGTTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTCCGTCCTCGCGGGCGGAGTGGGTTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.70,-6.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 304820-304191 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB851149.1 [Clostridium] bolteae 90B8 acBSf-supercont1.2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 304819 32 100.0 35 ................................ AATATGGAACTTAATGCCATAAATGCAGTTCCCAT 304752 32 100.0 33 ................................ AATCAATTCCCCGGTTTGTATGAAAATGAAACC 304687 32 100.0 35 ................................ TTATGCCAAAGAAAATAGTACAGCATCCATTACAA 304620 32 100.0 33 ................................ GATACGCCATCGGTCCCCGTAACTGCATCTGGC 304555 32 100.0 35 ................................ AAAAACTGACAATAGAAAAATTGCAGATACTTCTG 304488 32 100.0 34 ................................ GCTGAAGCCATTGGGAATATGGTTATGGGAAGAA 304422 32 100.0 35 ................................ TCTTCAAAAGCTATATCAGAATCATTCGGGGGAAT 304355 32 100.0 35 ................................ GGTCATAAACATCTGCCAAACCGGTGAATGTATAC 304288 32 100.0 34 ................................ GGAGAAGAACGTCCGTATGTGCGGGCGGAGACGA 304222 32 90.6 0 ........................T.....GT | ========== ====== ====== ====== ================================ =================================== ================== 10 32 99.1 34 GATCAGGCTCTCGCGAGCCTGCGGATTGAAAC # Left flank : GAAATGAGGTGATGGATTTGCTCGTACTGATAACCTATGACATTAATATTACTGAAGCCGCAGGGGCGCGACGTTTAAGACGTGTAGCTAAGCAATGTGTAAATTACGGTACACGAGTGCAGAATTCTGTTTTTGAATGTCAAGTAGATGCAACGCAATACGCGAAGCTAAAGCATCTTCTGTTAAAGGAAATTGACGAAGAAAAGGACAGCTTGCGTTTTTACTCGCTGGGTAATCATTACAATGGTAAGGTTGAGCATTATGGCGTACGGCGTGGAATACAGGTGGATGAGCCCTTGATTTTATGAAAAAACGGAAAGAATATGTCTGGGTTTGGCCGTGCGAACCCTAAGTGAACATAAATTCTGTGGGAGGTTCGCACCTGGATTTTAGGGTGAGTTGGAGGATGGTTTGTATAAAGAGGTGAAAAATATTGTGATATTTGGTTGATTGCAATAAAAATGTAATGTGTAAATGCTTTGAATTTGTAAATGTTTGCT # Right flank : TTCAGTATTGAAATTTACACAGAGTCGGCCTGATGTAGGAGTCAATTTTCCTAAAATTTAAAATAGTTTGAAATTAAAGTTCAGGAAGGTAAAGTGTAAAGTAATTCACTACAATCAATAAATGATTATTACTATTGGTTTAAAATGAATAATGACTGTAGCATTAAAGAATATATGCACAGCGTAAGATATATGGATTATACAATTTTACTTATTTCCGATGCGTATCTGAGGTCTAGAAATTGCATGTATGAAGTTTTGGAACTTATGAGAGACCGTATGTATAAAAATAAAATCTTCCCCGCAGTTGTGTCAAAGGAAATATATAACCCTGTAGTAGTCGCGAATTATGTAAAGTATTGGCAGGATGAACAGCAGCAATTAGAGGCGCAGCTGAGTAACCTGCGGATTCAGTATTTAGGAAATTTGAATCAGAAACTGAAAATGATTCAGGATATAGCCTCTAATACCGCTGATTTCCTGGATTTAATTGGTGATAT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:0, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATCAGGCTCTCGCGAGCCTGCGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.90,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : NA // Array 1 134077-134312 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB851153.1 [Clostridium] bolteae 90B8 acBSf-supercont1.4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 134077 33 100.0 34 ................................. TCTGTCCCATTCTCTAAATCTCCTTGCGTTCCTG 134144 33 100.0 36 ................................. TTATGCGCCACATAGGGTTAATATCGGTCATACCGC 134213 33 100.0 34 ................................. AATGAAATGATGTCGCTTGTATCAACATCATATA 134280 33 78.8 0 ...C..................CA..CCA...G | ========== ====== ====== ====== ================================= ==================================== ================== 4 33 94.7 35 GTCGAGGCTCGCGAGAGCCTTGTGGATTGAAAT # Left flank : AAGTTCTGGAACTACCTGAAAAATGTGGATTTCTGGCAGTGGCCGGAACAGCGGTGGCCCTGAAGGCGGGAAAGCTGGCTGCTGTAATGGAACGTCAGGGCAGAGTACTGCGTATTTGCGATGCCGAAGATATGAAGGAAGTGATGGCGGAATTTGTCCGTGCGTTCAAGCAGGGAGCCATATATCCGGAACAAAAGAGGCTTGTATTGAAAGAGTATCCGGCGGAGGCGGCAGAGGCTTTGCAGCATGCAGGATATATGCGGGAAATGAAGGATTATGTAATATATAAGTAGAGTTGGTTTCTGTGAGTTGGGAGCCCTTCAAACCAGGTGCGAATGCCAAGCTAACATGAAATGCCAGGGAGATTCGCACCTGAAAAACAGAGGAAAAGGCCGTGAAAGCGGGCTGGGTGAATGGACTGAATTGGTTGAACTGGGGAGAGAAGAGCATAGTGCATAAAATGTTAGGGGGGATGTGGAGTAGGTTTGGATAATTTTGCT # Right flank : GATACCTGTAAGCCCCTAAATTAATGCAAAAGGAAAATTGCTCCCCGCGTACCTAATGCATTGAAAGCAGCCATAATTATATATTGAGAATTCGCAAAAGTACAGTTTACAAGGGACTACACAGGGTAATGGTCTGACGGGAGGTGTGCTACCCGTCAGATTTTCCATGTGATGTTCAAGCTGTCACTCGTGGCAGCTACGGTGGTAACCATTAAATCCACCACCCGCCGCTTGTCGTCAAAGGATACATTGTCCCATGTGTCGAGGTAGCCGGAAATCTGATTGACCTGTTCCGGGCTGATGGCTTCCACCGTCAACTCGGCTATCTGCTTCACAAGTTCCTGCTTGCGTCCGTCCAGTTCCGCTATCTTCACATTCACATAGGAGAGCAGGACATTGTTTGCGCCCGTCAGACTGTCCACCAGCTTTTCAATCTCGCTGTCCACATGGAGAAGTTCCACTTGTAGGGCGGCGATTTTCGGGTTTGCCTTTGCCACTTT # Questionable array : NO Score: 8.60 # Score Detail : 1:0, 2:3, 3:3, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAGGCTCGCGAGAGCCTTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGAGGCTCGCGAGAGCCTTGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.90,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 404319-404530 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB851157.1 [Clostridium] bolteae 90B8 acBSf-supercont1.8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ============================ ================== 404319 32 100.0 26 ................................ GGTCTAAGTAATACCACTGTCCGCCC 404377 32 96.9 28 ...............................C CGTCCAGATAATACCATCTGCCATTAAT CT [404382] 404439 32 84.4 28 G....................CT.A......C CGTTCATATAATACCATTTGCCGTTGAT 404499 32 81.2 0 ................AT....ATA...T... | ========== ====== ====== ====== ================================ ============================ ================== 4 32 90.6 28 AGCCTGCCAGCCGGTCTGCATGGCGCCGCTGG # Left flank : CGGACAAGCGCTTTCCCAAGGCCAGACGCGTCCCGCGCACCTTGATGATAACGCTTCCGCTGCCTTTCTTATTCAATATATTCACAGGCGTCCCCTCATTGACCCCCAGGGCCTCAAGACGTCTGGTAATGCTCTCATCCACCTGCACGCCCGATACAACATACCGGCCGCCGATCTCACACTCATTCAGCTTTTTCTGCATTGATGCCTGTCTCCTTTTGTAGTTACATTTAAACCATATTCATTGTATGCTTAATGCGAAAAAATGTCAATAAAAAGAGTTTGTTATGACAAACTCAATTCAAAAAAAGATACAGCGAATCTCTCCGCTGCATCTTTTCCTGCTTTTTCTCTATATTTCTTTATGTTTCCGTTCTGTATATTCGTATTATGATTTACTGCACCCAGGCTCCTGAACCATCCACATATTTTCCGTCCGGCGTCCATGTATTATAATACATGGCTCCATTGGTGCCCAGATAGTAATACTTGCCATTAAT # Right flank : GAAGGGTTCAGATAGTACCAGGTCCCATCCAGCTTCTGCCAGCCGGTAACAATATACCCCTTGTTATTGAAATAATACCATGCGCCGTTAATCTGTTTCCAACAGGAGGCCGGATATCCGCCGGTATCATACGCATACCATACACCAGTACCATCCTGCTCCCAATGTCCGCTTCCGCCATAGCGGCCAAGCTCATCCTCATCAATATACAGGGAGTTGGAATCCTCGGACCATTCACCTGTCTTATTATTGTAACGGGAAATAGCCCTTACACGGAAGGTATAGTCTCCCTCCCGGTTAAAATAACCTGCAAAATTATATGAGGTTCCTGTAGTGCTGACCGTAGTGACTGTTTTGTCGTCGCGGAGCAGCTTTACATCATAGCTCTTAGCGCCTTCAATCTCCTCCCACTCAGCCGTGGTATCATTCCATTCCAGCTCCGACGCACCCTGAAGCTTGCCGCCGATACGTTTTAACTCAGCATACACTTCAATGTACTG # Questionable array : NO Score: 3.28 # Score Detail : 1:0, 2:3, 3:0, 4:0.53, 5:-1.5, 6:0.25, 7:-0.09, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGCCTGCCAGCCGGTCTGCATGGCGCCGCTGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTGCCAGCCGGTGAGCATGGCGCCGGAGG with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.50,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //