Array 1 1090260-1088618 **** Predicted by CRISPRDetect 2.4 *** >NC_019757.1 Cylindrospermum stagnale PCC 7417, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================================================================================================================================================================== ================== 1090259 37 100.0 34 ..................................... TCTTTCTCAGTGTTGAGCGTATTAGAAACATCTT 1090188 37 100.0 33 ..................................... ATAGCTCTAAGAGCTAATGACTCAGCTTCCCTT 1090118 37 100.0 34 ..................................... TCAAAGAATCTGACCACGGTGTATGCTGAAGACC 1090047 37 100.0 34 ..................................... TTCCATCTCCTCGCTATCCAGGGCTTTGGACTGA 1089976 37 100.0 34 ..................................... GTTTAAACGAAAGCCGGAGTTTGTAGGACATTAG 1089905 37 100.0 35 ..................................... AATATCTATTTGCAGCGCCAAGATACTCTAGAAAT 1089833 37 100.0 37 ..................................... TAAAGCTAACTGGTATTGGACAAGCGGGTGGTGTAGC 1089759 37 100.0 42 ..................................... CAGGGTAACTTGCCGGAACAACGGGCGGTAACAATTGGGCAA 1089680 37 100.0 36 ..................................... TCTACACGTCAAGATGTTTGCTGGCAAGATTCTTGG 1089607 37 100.0 37 ..................................... CCAAGAGGCAATCGCAGTTATTAACCAGTTGCACAAA 1089533 37 100.0 36 ..................................... TAATCAAGACTTACTAACTAGCATAAGTACTTTAGC 1089460 37 100.0 37 ..................................... CTGGATTTACAGATTGCTCAACCCAAAAGCCTACATT 1089386 37 100.0 32 ..................................... AACAATAGAAATTCCAACCACACCCGAACCAG 1089317 37 100.0 33 ..................................... GAATACAGCATTTTTAACGTGACAATTAAAACC 1089247 37 100.0 46 ..................................... ATAGCCATGCTGGAAGTACTCAGCCAGTGCTGGAATGCGTAACCAT 1089164 37 100.0 36 ..................................... CTCCATTGGCACCTACTTTCAGCTATCAATTGCCAC 1089091 37 100.0 36 ..................................... AGGTATACTTTCTTTCTCTATTAGCCAACTCTATTA 1089018 37 100.0 34 ..................................... AACCCATTTCATCTGCTTCAGCATTTGGACATCC 1088947 37 100.0 33 ..................................... GCAACTGATATATCACTTAGCATAAATTCACTA 1088877 37 100.0 184 ..................................... TCGATTCTGTCTAACTCAACATACGCCAATACGGTTCAGTTAAGCCTAAAACTCTTTGTCAAAGTGAATTTTTTTAACGTAGACGCGGAGCGGCGTGCCGCAGGCTACCGCAGAGGCGCAGAGGACACAGAGAGAAGAAAAAAATGCTTAACTGAACTGTATTGCAACATAGGCTTTAAATGCA 1088656 37 73.0 0 ........G.A........T......CA....TCCGA | G,C [1088620,1088622] ========== ====== ====== ====== ===================================== ======================================================================================================================================================================================== ================== 21 37 98.7 43 ATTGCAATTCCTCAAAATCCCTATTAGGGATTGAAAC # Left flank : AATCAACGAAAATTTCTATGTTGATTTTGGTCAAGAACCATCAGGCCCATCTCGTGCTCATGAAATGCGTTATCCTGGCGGTGATTGCACTTCAGATATTTGGCTTTGAGTTAGAGGATGTTCGTCAAATCATCAAGTTCACAGAAAGACCTCGCGAACATTCCTCTCGCTTTGGAATGTAGAGACGCTGCATGCAAGGTCTCTACATTATTGAATTTTTCCCTCTTATAGCTGGTTTTCAGGATGCTAGTTGCGCGGATGGGTAGGTGTAGAATTTCGATGCTGGAAAAAAACGCTTGGATCTCAATCACTGCAAGGGTTTCAGCCTCTAATCGCCCAATATCGATCCGCGCGATCTCTGAAAGCCTTAACCTAAAAGGGGTTCAGGCTTTTTTTTCTGAACCCTATTTTCAAACCAACGGCTGTAATGGTATATTGATGATCGATCCGCGCAACCGCACCTTGAAAACTAAATATAGTAAGGGTTTCAGAAGCCTGCT # Right flank : TTGATTAGACTAAAGTGTAGAGACGTTACAGGCAACATCTTTACAACATGACTTGTCTCTACAAAATATGTGTTTCATTCACCTGAAAACCGCTGTCAGCCAAGCTTGTCTAGAGTTGGTTGTGCTGAAATATCATCCCACTCAGACTGAGAGAGAGATTGCACTTCTAGCTGCATAGAAAAGCGATCGCTTGCTGCGGCAATTAAAGCGCTCATAACCCCTTCTCTACATAGGTTTTGGGGTAATTGTGCCGTGGTAAAAGATTCTGTCCCAAATACCTGCTTAAACAAATCTGCATCTGGGCTTAACCGAATAGAACCATGTTGTAAAACAGCTTCACCTCGTCGCAGTTGGGCGCTACCAATGAGTTTAGTCTGATCTAACAACACCAAATCTGCACCAGTCGCAGTACCAAAACAGTTAGGATTGTGGATGTAACCCCGGCCAGAAGTACCATAATCCAACTCTACACCAAGCGATCGCCACCCTTGAATTAAAAA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTCCTCAAAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : NA // Array 2 1101502-1103134 **** Predicted by CRISPRDetect 2.4 *** >NC_019757.1 Cylindrospermum stagnale PCC 7417, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 1101502 37 100.0 34 ..................................... AAGATAAACTCCGAACTACCGGGGACTAGCCAGC 1101573 37 100.0 33 ..................................... CGTTACTTCCCAATGTATTTGCACTAGAGGAAG 1101643 37 100.0 34 ..................................... TGAGATGCAATTCGCTTCTCAACTTTATTCCAAG 1101714 37 100.0 35 ..................................... TCACAAGTTTATTTCTGCTATTAGCTACATTGATG 1101786 37 100.0 34 ..................................... TGGAGCGTAAGCAAAAAGCAGCACGTAAGCGGGC 1101857 37 100.0 34 ..................................... GATTTTTTGGACAATCCCAGTTTGGAAATGTGCC 1101928 37 100.0 34 ..................................... AGCTCCTTTAATAAAAGCTGAACCTATATCACTT 1101999 37 100.0 43 ..................................... TTAGCTGACTGTAATCTAGCTAAGTAATCAGCAATCCCTACAG 1102079 37 100.0 35 ..................................... AGAAAATGTCTGTTACATAGGAGACGCTAAATACA 1102151 37 100.0 35 ..................................... TCGGGACGGCGATCGCTAACAACTCTTTTTAAATC 1102223 37 100.0 38 ..................................... AGCCGGCTTTAGTTCATACTCCACGCTTAACGGCGGAT 1102298 37 100.0 34 ..................................... CTCCCACGCTTCAGCCATTCCGGCTAGTTGATAT 1102369 37 100.0 41 ..................................... GATGTGGTTGGCATTTGGAGCTAATCTAAAAATTACCTCCT 1102447 37 100.0 37 ..................................... CCTGGAGTTATAGCTCCGATGTTTACGTTGTTCAAAC 1102521 37 100.0 34 ..................................... ATTGCTACTGGTTCTGGAAGCGAAATATCTAAAG 1102592 37 100.0 35 ..................................... TTGCTAATTTTTTTAGTAATTGGAATAATAGTAAA 1102664 37 100.0 35 ..................................... ATCTTCGGGTGAGGAATACTTATCATAGTTCCCTG 1102736 37 100.0 32 ..................................... CATCTATAGCGATCGCCACCCAGCGCAGAATA 1102805 37 100.0 33 ..................................... TTGAGTGCCGCCAGCAAAAACTTCGGTCAGGAT 1102875 37 97.3 40 ......................C.............. TACTTGCCACCATCCTGAATAAGACACTCCAGATAACCAG 1102952 37 100.0 34 ..................................... TACATAAACATCAACAAACAAAAACTAGCCGAGT 1103023 37 100.0 38 ..................................... ATCTCTTCATCTGATATATTCAAGTTGAAGTTTAGGAT 1103098 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =========================================== ================== 23 37 99.9 36 GTTACAATTCACCCAAATCCCTATCAGGGATTGAAAC # Left flank : CGGTAATAAAGACGCCACATCTTGGGCATTTGCACCCCAACCGTGTAAAGCGACGATTAAACCTTCAGGTTCTTGTCCTGTTGGTGGTGAAACCTTAATAAAATCTAAAGTTTTAGTCATGAGTCGTTTAGTGAAAATCAAGGCTGAAAAAGATAACCTTTATGCAAATTATGCAAGGATATGAGGATAAATTTCACATTTCTCAACTGATTATTAGAAAGCCGCTTCTAGCAAGGTTTTTGGGCGATAAATGCGCGGATGGGTAGGTGTAGAAATTCGATGGTGAAAAAAAATGCTTCTATCTCAATCACTGCAAGGGTTTCAGCCTCTGAACTATCAATGACGATCCGCGCAAACTCTGAAAGGCTTAATACAAAAGGGTTTCGGCGATTTTTTTTCTTACCCCTCTTTTCAAGCAGCGGCTGGAATGGTACTATCGATCTAGATCCGCGCAACCGCACCTTGAAAACTAAATACTGTAAGCCTTCCAGATGCCAGCG # Right flank : CAACTCTTCATCTCTATGTCCCAGGTATCGCTACCCCAATCGCTTCAGAAAGACCTACCGCTCACCGCTCTTGCGCCTATGCAGGATGTGACAAACCTCTGGTTTATGAAGGTTATTGCCCACTACGGCAGTCCTGACTACTTCTTCACCGAGTATTTCCGCGTGAATGATACCTCACGGCTCAATCGTAACATTCTGGCAGCAATCACCGAAAACGACACAGGTCGCCCGGTTTTTGCTCAAATGATTGGCGAAAGCATTCCAGATTTAGTAAGAACAGCAAAGGAACTCTGCAAATATAATATCGCTGGAGTAGACTTGAACATGGGCTGTCCAGCACCGAGAATCTATCGCAAAAATGTTGGGGGTGGATTGCTGCGAGAACCGGAAAAAGTGGAGCGGATTTTGGGAGAACTACGGCAGGCTGTAAGCGATCGCCCTTTAACCGTCAAGATGCGCGTAGGCTTTGAAAATACAGATAACTTTTACTCCATTCTAGA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAATTCACCCAAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 3 3351638-3350944 **** Predicted by CRISPRDetect 2.4 *** >NC_019757.1 Cylindrospermum stagnale PCC 7417, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 3351637 37 100.0 35 ..................................... AAAAACTAAAAACAAACAGAACGCACCACCCACAA 3351565 37 100.0 36 ..................................... GTAATAATCCTTACCTTTGGATGTTTTCTCCCCATC 3351492 37 100.0 34 ..................................... AAAAATAGTTCGGCATTAGTATCAAATTGACTAA 3351421 37 100.0 39 ..................................... CTTCTAATGATTGACTCTGCTTGAGATTTCAACTTCTCA 3351345 37 100.0 35 ..................................... ATCCCAAACTTTACAGTTAGTCCAGTTGGCTATGG 3351273 37 100.0 39 ..................................... ATCCGGGGTAGGCACTTCAATCAGACCTTTTAGCTTTGG 3351197 37 100.0 36 ..................................... GTGATATAAACATCACTGTTGTACAGATAAGCTTTA 3351124 37 100.0 36 ..................................... CTGTATGGGGCGCCGTTCTCCACATACGTCACAAAT 3351051 37 100.0 34 ..................................... TTTTAAGGGCTTCGGCAAAGGTTAAGGGGTCATG 3350980 37 97.3 0 ..............................T...... | ========== ====== ====== ====== ===================================== ======================================= ================== 10 37 99.7 36 CTTTCCGCTAACCAACTCCCCGCAAGGGGACTGAAAC # Left flank : CACAACCTGTCCCTCTCCTTCGCAAGGAGAGGGATGTCTGTCAGGACAGGGTGAGGTTTCTCAAGATTTTTGGCTAATCGAATAACTGGTTCTGCTACGCACAACCTGTCCCTCTCCTTGCGAAGGAGAGGGATGTCCGTCAGGACAGGGTGAGGTTTTTCAAGATTTTTGGGTAATCGAATAACTTGTGTGTACGCGGTAGAATGAAAAAGGCTGGGGGGATCTCATTTGTTTCAAGGTTATAGGGAATTGGTATGAGGTAAGAAAAAATACTTGACAACCTGAGAGCAAAGGTTTTATTTTTATAGAAATTGGCAAGCCAAAGCGGGGGCAAAAACCCTGGGGGGTTCGCCAAATCCTCAGAACCTTGAAAATTCAATAGTTCTAGCGTTTCAATAGTTTCAGCCGGCAGTTTTTCGGAGCCTGAAATCGACCTAAAAATAGAGGTCTGCCAAAATCCTGTCTAGAATCCTTCTCCAGTTTGACTTTCAGATGGCGGA # Right flank : TTTGATGGAAGCGATCGCCCTACTTCCCTACTCCCTTTGCGCTAACAAACTCCGGCCCCAATACCAAACGGGTTTTCCTGCTGATTGCTCAATGCAAACACTACCACCATCAGTGAAGCGGCAGTTTCCCGGTTTGTTTCCCAGTGATAAACTCTACAACCATCAATGGGAAAAACGTGGGACTTGTTCAGGTAAAACCCCTACACAATACCTAGCATTAAGTAAACAGTTAAAAGATTCCGTCGCCATTCCCACAGCATATAATCGCCCCGTTCAACCCTTCCGCACCACCATCAAAGACCTGAAAACTGCATTTGTGCGTGCTAGTGCTAACAGTAAATTTACTGTTGACCAAATAGCCCCTTATTGTTCTGATTCCGGCAGGTTTTTGCAAGAGGTGTTCTTTTGCTTCGCGAAAGACGGTAAAACAGGCGCTTGTAGTACAGAAATTTTGCAGCGTTCTCAAAGAAGCTGTGGCCAGGCAAATTTTTTGGTGAGGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCCGCTAACCAACTCCCCGCAAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.42 Confidence: HIGH] # Array family : NA // Array 4 3829839-3832320 **** Predicted by CRISPRDetect 2.4 *** >NC_019757.1 Cylindrospermum stagnale PCC 7417, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 3829839 37 100.0 34 ..................................... GAATACTTGGGCTTTCCTACAACAACAGTAGTGG 3829910 37 100.0 34 ..................................... GTGGGATCTTTATCAACTTCAGACGCAAGCTGGA 3829981 37 100.0 40 ..................................... ACAAAGAAAATACGAAACCGCAGAAAAGATACTTGCGATC 3830058 37 100.0 33 ..................................... GCATACAGAATTACTTGTTCGCAATTCCTGCAA 3830128 37 100.0 34 ..................................... GCCGTGAACCATAAATTAAAAACCCTCGATGTAT 3830199 37 100.0 33 ..................................... CTTTAAAGTCTGTGACAATTCCCGCCGCGTTGT 3830269 37 100.0 34 ..................................... GCGAGTGCTGCTAGTGAATTCCTTGCCCCGTTGG 3830340 37 100.0 33 ..................................... GAAAGCCATAATAAGTATATAGTCACGGATCTG 3830410 37 100.0 38 ..................................... TTACCCTAATGCTAATGTAGCTCCTTTAGATTATTTAA 3830485 37 100.0 33 ..................................... TTTTCTCCTATTTCTACAAGAGTTGAACTACCA 3830555 37 100.0 35 ..................................... GTAAAGAGATACGGCATCGATAATGTAGTACTCCT 3830627 37 100.0 39 ..................................... CTTGACTACTGCTATGTGATTGTAAAACCCTCCAATTCC 3830703 37 100.0 32 ..................................... TAAAACTTGGTCTGCAAGCAAAGTACCCGCAG 3830772 37 100.0 33 ..................................... GCAATGATTCTTGCAGGAGGTGGGATGAGTCAT 3830842 37 100.0 33 ..................................... CTTTGTGACAAGCTAGCTCCTATTCTTCATTGG 3830912 37 100.0 33 ..................................... CAATAACGGCTATAGTGAAAAGCCAAATGTGCA 3830982 37 100.0 34 ..................................... GAAATGTCTACCATCCAAGCGAACCACCCATAAA 3831053 37 100.0 33 ..................................... TTTTTCATGGATTGAAGAAAAAATTACTCGTTG 3831123 37 100.0 36 ..................................... AAAAGCCAGAATCATTGGTAAATCCTGGAGAATCAA 3831196 37 100.0 34 ..................................... TTTCTAGTGGGAAATAAGAGAGTAGTTTGGATAA 3831267 37 100.0 38 ..................................... TTCTAGGCTAGGTAGTTCTAGCAGAGTACCCAAAGCCA 3831342 37 100.0 32 ..................................... TTTATTTGTCAATGAAGCGGCAAGCCTTGCTA 3831411 37 100.0 38 ..................................... AGCCGCTCCCATTTCTAAATTATAAGCAGTGATCCCCT 3831486 37 100.0 37 ..................................... TTTAGAACAACTTGTAGAAGATGGAAAGTTGCTATTT 3831560 37 100.0 33 ..................................... TTGCAGGGCACGGGCATAAATTACGTTAGTCCC 3831630 37 100.0 35 ..................................... GTAAACGAGATTTTAAATAGATTTCCTATTGCACT 3831702 37 100.0 32 ..................................... AGCCCAGTTGGACGCAAAGAAGAGATAGTTTG 3831771 37 100.0 35 ..................................... AAATCATAAATATAAATTGGGAAATGCAAGTGCGA 3831843 37 100.0 39 ..................................... TATATCCCTGACCTGCCACCTGCACGAAGGTAGACTTGC 3831919 37 100.0 35 ..................................... TTAGAATTAATTCCTCAGCATGAAGGAAAGAGCAC 3831991 37 100.0 41 ..................................... GCTGTTGCTGTCTATTCGTCCCGCCAATGCGATTGCCACAG 3832069 37 100.0 35 ..................................... TCTGATCCCAATCCTTTATCTATGCGTATCAGTTT 3832141 37 100.0 34 ..................................... TTGAGTTACTTACAAGATAAACTAGATTTATACT 3832212 37 100.0 35 ..................................... GCATATATGATGGTGAATTTCCAAATCTGCCAAGG 3832284 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================= ================== 35 37 100.0 35 GTTGCAATTCATCAAAATCCCTATTAGGGATTGAAAC # Left flank : TATGGCTGCGATCGCAGCTGGTACAGATTCCCTGATGATTGAAGTACATCCCAATCCTGCCAAAGCCTTATCTGACGGGCCACAATCTTTGACACCAGAAGGTTTTGATAAGTTGATGCCAGAATTAGCAGTCATTGCTAAAGCGATGGGACGCTGGGAACAACCAGCAGTTGCCTTAGTGTAAACCTTTCTTTTGTGAGGGGAACTGCTTTGAATTTTTACCCTTTATAGCTGGATTTCATGATGCTAGTTGCGCGGATGGGTGGGTGTAGAATTTCGATGCTGGAAAAAAATGCTTGGATCTCAATCACTGCAAGGGTTTCAGCCTCTAATCGCCCAATATCGATCCGCGCGATCTCTGAAAGCCTTAACCTTAAAGGGTTTCAGCCTTTTTTTTCTGACCCCTATTTTCAAACCAACGGCTGTAATGGTATATTGATGATCGATCCGCGCAACTGTACCTTGAAAACTAAATATGGTAAGGTTTCCAGACCCCAGCG # Right flank : CTTCCTACATGACACAGATACCACCAAATACATTGTTGCAACTCAAGCCATTGGCTTTTGCATTCTTGAAAAGAAATCTGTAAGCGAGTCTACGATTCCTGTTACCAGGAGCAATTAAGAAATCAGGCTTCAACAGATTACGCTAAAAGAACTAATTTTCTGGGTAAATCTAGCAAGGGTGTTACCAGGGGCAAGTAGTATTTAAGTAGGTTGGGTTGAGGCACAAAACCCAATATTATCAATAAATTTGTTGGGTTCTCACACGGTAAGCCCAACTTACAATTTTCTCAAGTGAACCGCATTGATCATAAAAATACTCGGTATGCGGGAAAGTCAGGGTCTTTAGACCTGAGAGGGAAGCGACACGAGCGGTTTTAACCGCCGTGGTATGAGTCTATATTATCCGTGGTGTGGGTCTTCAATATAACGCCTAACTGCTTCGCTGCTAACATTCCCTGCTGTACTCACAAAATAACTTTGTAGTCGATTATGATATGGAT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAATTCATCAAAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [51.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : NA // Array 5 4060552-4058587 **** Predicted by CRISPRDetect 2.4 *** >NC_019757.1 Cylindrospermum stagnale PCC 7417, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 4060551 37 100.0 34 ..................................... GGAGTAAGCCGCCTTCAGCTTCTCTGGATTTTCA 4060480 37 100.0 37 ..................................... AACCTTGTATATGCACGGCTAAACTCAGAGGAAAAAG 4060406 37 100.0 35 ..................................... TAAACTGATATTATTCTCAGCATAGGATTTTTTAA 4060334 37 100.0 33 ..................................... TGGGCACAATATACATACTTCTTTTTCGCACAG 4060264 37 100.0 35 ..................................... GCATCCACCCAGATGTGGCGCTTCTCATATACACC 4060192 37 100.0 32 ..................................... GCAAAGTTTCTAGGGAAGTAGACATATAAAGC 4060123 37 100.0 35 ..................................... CAACAACAGTAGAATCTTCCACTTTGGTAATAGCA 4060051 37 100.0 33 ..................................... GAGAACGCCGCAAAGATAATTACTGTACTTGGC 4059981 37 100.0 35 ..................................... CCTATTAAGGGATATTTTATTGCACTAATAGACGA 4059909 37 100.0 34 ..................................... TCCTGTGGTGTGTCGGGTGTAGCGTAAAAATTTC 4059838 37 100.0 35 ..................................... ACTACCTTGCAGTAAGCCGTAGCCTACGTCTTGTA 4059766 37 100.0 34 ..................................... TTACTGTGTAAACCTTACTGCGTAAGAATTATAG 4059695 37 100.0 36 ..................................... TAAATTTACTAAATCTAACAGATTTAGAACGACAAA 4059622 37 100.0 35 ..................................... AGCTTCTCTTAATTAGCGCAAAAATCAACAGTTAA 4059550 37 100.0 34 ..................................... TTGAGACAGTATTTTTAAGCTTATTGGTTGCCCA 4059479 37 100.0 35 ..................................... AAGCCGCTCCCGCCAAATCGCTTGCACTTCTGGTA 4059407 37 100.0 35 ..................................... TTCAAAGATGAATGATGGTGGACGCTGGAGGCGAA 4059335 37 100.0 34 ..................................... CAAACTTATTAACCTTGCCAGATGAATTGAGCAA 4059264 37 100.0 33 ..................................... CTGGAGTAGCTGCAACAACCTGCACATTACCAC 4059194 37 100.0 37 ..................................... TACCTTGCTCTGTTCCTACCTGCGCTACTGGCGAATA 4059120 37 100.0 38 ..................................... GAAAATCTTAAAGAGTCCATTGTGAAGCTGCGAGTAGC 4059045 37 100.0 34 ..................................... CTGATGAATAACCAAGACAGTGCAGTGCTGATAA 4058974 37 100.0 32 ..................................... ACTTTAAAAACATCTATCTATGTAAGTGGTGA 4058905 37 100.0 34 ..................................... ACCGCTCCGCCACTTCAGCTATTAAATCATACCA 4058834 37 100.0 34 ..................................... CCAGAAGCTGCTGCAAAATTGAGATTATTTCCAG 4058763 37 97.3 34 ...........T......................... TACCAATTGAAACATTGGCGTAGGCAGTAGTGCT 4058692 37 97.3 32 ...........T......................... AACCAAGCCGCCAAACTCCAAACATCCGCGAT 4058623 37 97.3 0 ...........T......................... | ========== ====== ====== ====== ===================================== ====================================== ================== 28 37 99.7 34 GTTGCAATTCACCAAAATCCCTATTAGGGATTGAAAC # Left flank : TTTACACAACTTTCTCCGTAGGGTGCGTTCCCTAACGCACAATCTATAAGACTTTCAATGAACAAAACCTCGTACTATATTTATGGCTTTTTGTCAATGAATAAGGCTTAAATATTTTATGTATCGGCAATGGCACTAAAGTCGCTCTAGCTCGTTTTTCGGTAAAATTTGGGTATATTGGGTGGAGTATACCTAGAAACTATTAGTAACTTTTTTCCGAATCCTCTTCTAGCTTGGTTTTTGAGCGTTATTTGCGCGGATGGGTAGGTGTACAAAATCGAGTGCGAAAAAAAGTGCCTCTATCCCAATTCCCGCAAGGGTTTCCAGGCTTTTTACCAAATTTCGATCCGCGCAAACCTGGAAATGCTTGCTGTATATAGGTTTTAGCGTTTTTTATTTTCCCTCCTCTTTTCAAACGATCGCTGAAATGGTATATTTATGATCGATCCGCGCAACCGCACCTTGAAAACTACATATAGCTTGGGTTCCAGACCCCCGCA # Right flank : GTTAAGAAAAGGTGCATTAGCCAGAATCATAACGCACCCTACAGGTTGGATATTTTTTAAATTACAAGTTTCTAAGCGAAAGCGGAAAAATCTAGATTGGGGGGAATATCTTGAATGCGCCCTGGGCCGATAGCTCGCAATGCTTCGCTGAGGGCAATATCTCCAGTGTACAGGGCTTTACCGACAATTACACCTGTGACTCCTTGGGGTTCTAATGCTAATAGACTCAATAAATCGGTAACAGAACTGACGCCACCAGAAGCGATTACAGGAATGGTTATTGCGCCGGCGAGTTCTCGCAAAGCGTCTAGGTTGGGGCCTGAGAGGGTACCATCACGGTTGATGTCGGTGTAAATGATGGCGGCTGCGCCTAATTCTTGCATTTGCACTGCTAGTTGGGTGGCTAAAACTTCTGAGGTTTCTAACCAACCACGAGTTGCGACTAGTCCGTTACGGGCATCTATGCCGATAATAATCTTTCCGGGGAATTCTTGGCAGAG # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAATTCACCAAAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.5 Confidence: HIGH] # Array family : NA // Array 6 4707333-4708567 **** Predicted by CRISPRDetect 2.4 *** >NC_019757.1 Cylindrospermum stagnale PCC 7417, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================ ================== 4707333 36 97.2 43 ...G................................ CAGATTGAAAGGTTGCTTCCAACTCTTCTTTCTGTAGCCACGC 4707412 36 94.4 35 ...G..........T..................... CTCGCATCTACCGGTTCGTCCGGGGATATTTGCAG 4707483 36 94.4 36 ...G..........T..................... TTGCAACAATATGTACCTTACTGGGTACGTTAACAA 4707555 36 94.4 37 ...G..........T..................... GAGATACGACGAAAGCAGAAGGTCGCCCTTCGTATTC 4707628 36 94.4 48 ...G..........T..................... CGACTCTAGCTCAAGAGAGCCTTCATCGTTGCAAACTCATTGTGCAGC 4707712 36 97.2 33 ..............C..................... TTTGGCTCTCTAACGGACGTGTCTATTCGGAAT 4707781 36 100.0 38 .................................... TTACCCGATTATCTTCTGCCTGCAAAACTCGTTGAATA 4707855 36 100.0 36 .................................... CATACAGACGGGAATTGGTTCCCGACGTGGTGATCA 4707927 36 100.0 45 .................................... TTGCCATTAGGCTTGTCGTAATTGGGTGATTTATGCACCTCTTTT 4708008 36 97.2 39 ...................................A ATCGTTGGAATTGCGATTTTTGCCGTATCACCTAGAACT 4708083 36 100.0 36 .................................... GTATATGTGTCATCGGCTTCAAGATGAACAGTGAGA 4708155 36 100.0 35 .................................... AACGGATATGCTTCTTTCAAAGCAGGATTAAGCTG 4708226 36 100.0 41 .................................... TTGACTTCTCCGCCAATCAATCTTCCATAAAGGGCATAGGC 4708303 36 97.2 36 ..............T..................... ATTTCTATGACAGGGATATCGATGCCACGTAACACA 4708375 36 97.2 44 ..............T..................... GAGGATGCCATTGACAGCATGCCCAGCCCATCCCAGCAGGAGGA 4708455 36 97.2 41 ..............T..................... ACCCAGAAATTATCCCAAAGCATAATCACAGGGTTTATACC 4708532 36 91.7 0 ..............................CA...T | ========== ====== ====== ====== ==================================== ================================================ ================== 17 36 97.2 39 GTCACTTCTATTCTGAGAAGTGGAATTAATGGAAAC # Left flank : ATCTAATTTGCATAATCAAATTAACTAAAACTCTTGTGGGGGAACTACTGTGTTGGGCGGGTTTCCCGACTTCCCTACGGGGAACCTCTCCCCAACCCCTCTCCGAAACGGAGAGGGGCAAAAATATTCTTAGTTTTGAAGGATAAAATAAAGGTTTTAAAGCCTCTTTCCCCGTGGGGGGGAGGTTTGGAAAGGGGTTATTTACATTAGTGGTTGATGCTACTTGTAGGTTTGCTCTATGTTTTAAGGTAGTGGGTGCTTAATTATTTAGCTAGTGTTTTCATGCGAATGACAAATTTATGAATTTTCTCGGCATTCTCTGCGTCAGGGTCAGCAAAAGCTGGAAACCGTTATTATCTCGTTGACCCTGCCGATATCTCTCTCTGACAGGGTTTTGGGGTTTTTCTGCCTCTAGCTGACGCAGATAAATTCTGTGTGCACAGACCCCGTCGCAAACGGCAGCTGGACATTAGGCATAGTCAGGGCTTAAAGTATGAGGG # Right flank : TTAAAAGGTCGGGATATTAACATCCGACCTTTTTTAAAAACCATTAAATATAGTTTAAATATTTACTTGTTACTCGCTATAAACTTTAACAATATCCTCACCCATTCCCCTAACTTTAACTAATAACTCTTGTGGCTGTAACACCTTCAAACCTCCTCCAAACCCAACAATCCAGCGAATAAACTCTACATCACCCAAACACCATTTAGGCAATACTACCCGAAAGCGATTGGGGAAGTTTTTATCTCCGGTTTTCTTGAGACAGAAAATCGACTTGGGGGAGTTTAATTTCCCTCCTATTACAGGTGGAGACATCTTCATTTGCTGTGCAGGAAATCTCTTAGTTCCCTCAGCAATAAATCTAAACATAGCATCATTAAACCATAGTTCTACTGTGACACAGACTTGCGATCGCTTTCCTTTGTCCTGACTGAGGTACAAAAGCTGGTCACTAGCGCTGTATCCCAAGAAAATTCCCGCACCGGCAGCAGAGAGTTTAT # Questionable array : NO Score: 5.65 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.53, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACTTCTATTCTGAGAAGTGGAATTAATGGAAAC # Alternate repeat : GTCGCTTCTATTCTTAGAAGTGGAATTAATGGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.30,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 7 4718418-4718600 **** Predicted by CRISPRDetect 2.4 *** >NC_019757.1 Cylindrospermum stagnale PCC 7417, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 4718418 36 100.0 37 .................................... CCTTGTTTTGTGCCAAGTTCGTCTTTGTCATCTATTG 4718491 36 100.0 38 .................................... AAGCGAGGTTTACCACCAGCGCTTTTTCTCTACTTCTT 4718565 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ====================================== ================== 3 36 100.0 42 CCCCACCGATTGGGTTAAATCGGAATTATTGGAAAC # Left flank : ATTTGCGTGGGGTAAAAGATAGTGAAGTAATTAACTATTTATTGGCATATAAAAATCATCAAGTATCTGATGTTATGACTGCCTATAACCATCATGTAAAGCAACATTTTTTGAAAGCTATAGACCGTTTTCAACTTCCTTACAAAAGAGACAAGTTAGCTAAAAGGCTGCAAAAAATAGCAGACTCTATTAGATGAAATACAATCGAGGGCGGGGAAACCCCGCCCCTACAGGGTTTGCGATTTAAAACTGTACCTCACTGATATGAAAACCGCTATATCTGCTTTTAGGGGATTTGTGGGGGATTTTTAGATGTTCATCGACACACGTCGGCAAATCGCTGAAACCCTATATTTTCCGTTGAGGTGTGTCGATTGCTTACTGGGAAAGGATTTCAGCCATGTGTTTGACTCCATTTTGGGCAGTGTATATAATCTTTTTTAGAGGTGTGTCGATTTGGTGGCTGAAACCCTTACTGGGTAAGGGCTGCTAGACGAACT # Right flank : CTTTTTGCACATTTGACCCCATTGCGGCAGGGTCAGCAAAAGCTGGAAACCGTGATTATCTCGTTGACCCCGCCGATGTCTCTCTCTGACAGGGTTTCAGGGTTTTTCTACCTCTAACTGACTCAGATAAATTCTGTGTCCATAGACCCCGCCGCAAACGGCATCTGGACATTAGGCACAGTCAGGGCTTAATGTAGGAGGGGTCACTTCTATTCTTAGAAGTGGAATTAATGGAAACACTTCGCTTGGAAGCAGGTCGATTGCGTGCAAGACATAGTCACTTCTATTCTGAGAAGTGGAATTAATGGAAACCAGCTACGAACTTTGTAACCCTTGGATAGTAATTCTGCTGTCACTTCTATTCTGAGAAGTGGAATTAATGGAAACTTTCTAGCTGTTAATACTAAAGCTGTTTGGTCTTCAATGTCACTTCTATTCTGAGAAGTGGAATTAATGGAAACGCCCAAGGTGCAGCAGGGGTAGGGGGGTTTACATAGATA # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCCACCGATTGGGTTAAATCGGAATTATTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.30,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [50.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 8 4719491-4718802 **** Predicted by CRISPRDetect 2.4 *** >NC_019757.1 Cylindrospermum stagnale PCC 7417, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 4719490 36 100.0 34 .................................... ATGAAGATGAGATAGGGCGCTCTGTCCTCCACGA 4719420 36 100.0 35 .................................... GTCTGACATGAATGAATGGCAGAAATACCATTGGC 4719349 36 100.0 37 .................................... CGCGATAGAAGCGCTCAAGGAAGCCAATCAGATAGAA 4719276 36 100.0 34 .................................... CTCGAAGGCGGCCAGCGCGCGCGGCATGTGCAGG 4719206 36 97.2 35 ..........................C......... TTGCTGGCGTTGAGCGTTTCTGACGTTGCAAGCTT 4719135 36 100.0 39 .................................... TATCTATGTAAACCCCCCTACCCCTGCTGCACCTTGGGC 4719060 36 100.0 38 .................................... ATTGAAGACCAAACAGCTTTAGTATTAACAGCTAGAAA 4718986 36 100.0 39 .................................... AGCAGAATTACTATCCAAGGGTTACAAAGTTCGTAGCTG 4718911 36 100.0 38 .................................... TATGTCTTGCACGCAATCGACCTGCTTCCAAGCGAAGT 4718837 36 97.2 0 .....................A.............. | ========== ====== ====== ====== ==================================== ======================================= ================== 10 36 99.4 37 GTTTCCATTAATTCCACTTCTCAGAATAGAAGTGAC # Left flank : GGGGGACTTTAAGAAGTTTTACCCCCCTTTTTAAGGGGGGCAAGGGGGGATCTAGATCAATTTTGATACTTTTCAAACAACCTCTTAGGGGATGGAGAGCGAAGGACGAACGGCCCACCAAAAACGTTCGGCAAAGCCCGTGCCATCGCCTACCCGCCCACTATTCCTCAAAGGAGAAAATAACTGACTAATGACTCTATCTACTGAATTATGGGCAACAAATAAAGACTTGTCCCTAGCTTGTCTAGAGCATCCTTATGTGAAAACATCGCCTTAAAAGGTCATTAATGGGCAAGTTTGAGGGACGGAATAGCGTGAAGAGTTGATTTTATTATGCAAAAAGATGAGTAGTTTCGTACCATTTTTGGACAAATTACTAAAGCACGTTTCGCAACATTTGTTTACAACGTGTCCTATTTTGCACATACCTCAGTGGATACTTCTCAGAATAGAAGTGACTCGCGGTAAGCGTCATCGGCATTTAGTTTTGAATAGATTGA # Right flank : CCCTCCTACATTAAGCCCTGACTGTGCCTAATGTCCAGATGCCGTTTGCGGCGGGGTCTATGGACACAGAATTTATCTGAGTCAGTTAGAGGTAGAAAAACCCTGAAACCCTGTCAGAGAGAGACATCGGCGGGGTCAACGAGATAATCACGGTTTCCAGCTTTTGCTGACCCTGCCGCAATGGGGTCAAATGTGCAAAAAGTTTCCAATAATTCCGATTTAACCCAATCGGTGGGGAAGAAGTAGAGAAAAAGCGCTGGTGGTAAACCTCGCTTGTTTCCAATAATTCCGATTTAACCCAATCGGTGGGGCAATAGATGACAAAGACGAACTTGGCACAAAACAAGGGTTTCCAATAATTCCGATTTAACCCAATCGGTGGGGAGTTCGTCTAGCAGCCCTTACCCAGTAAGGGTTTCAGCCACCAAATCGACACACCTCTAAAAAAGATTATATACACTGCCCAAAATGGAGTCAAACACATGGCTGAAATCCTTTCC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATTAATTCCACTTCTCAGAATAGAAGTGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.30,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.68 Confidence: LOW] # Array family : NA // Array 9 5966534-5968731 **** Predicted by CRISPRDetect 2.4 *** >NC_019757.1 Cylindrospermum stagnale PCC 7417, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================================================================ ================== 5966534 37 100.0 35 ..................................... GGTAACCGAGAAACCAGCTTTCTTTAATTTAGCTT 5966606 37 100.0 34 ..................................... GAAAAATCCAGCAAAGCCAAGCATGGAGACTGGA 5966677 37 100.0 35 ..................................... TGATGTAATTAGCCATTTAGTTAACAATATGCCTG 5966749 37 100.0 34 ..................................... TGTATCTCAATAAAGCTTCCCGCCAACCAAACCA 5966820 37 100.0 34 ..................................... CAATCAGCATCAATTATGAGACTGATGAAGACGA 5966891 37 100.0 35 ..................................... AATGGTAACAGTGCTATTGATAACCGCTTAAACCG 5966963 37 100.0 34 ..................................... TCTAGGCGTAAGTGACAAACAACGGGATTTTATC 5967034 37 100.0 35 ..................................... TTAGGATTCCCAGGATCTGCTTCGATTATAAGATT 5967106 37 100.0 39 ..................................... GCAACGCGCCTAGCGATGCGGCAGACTGCATTGTTCTTT 5967182 37 100.0 37 ..................................... GTGGCAATTGGAGAGATACAACGGATTTGGGCATCGC 5967256 37 100.0 32 ..................................... TTTGCAGTATTCTTCAATGACAACCCTAACTT 5967325 37 100.0 36 ..................................... CACAGACTTGTTCTATGCCAACAAGAAAGCAGATAT 5967398 37 100.0 35 ..................................... GTGGCTAAGAACAACCCTAGCAAGTTAGGTGAGCC 5967470 37 100.0 36 ..................................... TTAAACTCTACTCTTCCAGCCTATGAAAATGATTTA 5967543 37 100.0 35 ..................................... CTGAATAAATAACAACTAAGGAGACATCCCAATGG 5967615 37 100.0 38 ..................................... TCTTCATTTAAAGTAGCAAGATTATTTTTGATGCAATC 5967690 37 100.0 34 ..................................... TCAGAATTATTTTCAGCCCAGCTAGTAAAAACTG 5967761 37 100.0 35 ..................................... CTTGCAGTTAAACGCGACTACAGCGCCTGGGGGAA 5967833 37 100.0 40 ..................................... CTCTTACTCTAGCAGACCTAGACATTACAGAAGGAGAAGG 5967910 37 100.0 39 ..................................... GCGTATGAAATTGCTAGATCACTGGACGAAGCAGAAAGT 5967986 37 100.0 30 ..................................... TTGCCAGTGGAGCCAAGGCAGCAGACACAG 5968053 37 100.0 38 ..................................... TATGACGTACCCGTGGAGGTTGATTTACAAATGTGCGA 5968128 37 100.0 35 ..................................... CTTTCCATAGAAGCGCGATCGCCATCTGCAAACCC 5968200 37 100.0 39 ..................................... GCAACTGATTTTTTGATAGTGCTAAAAGTTCTTTTCAAG 5968276 37 100.0 34 ..................................... TAGACGAAACCCAGGATATAAAAAGGATTGTGTG 5968347 37 100.0 36 ..................................... ATCGGAAGCGGGTAACTCGTAACATTTCGCAAGAAG 5968420 37 100.0 33 ..................................... GACTTAATCCCCGAAAGCACCTTTGACCAATTT 5968490 37 100.0 37 ..................................... TCAGCGGGAAGTATCGCTACTGGCTGACCTTGCATCA 5968564 37 100.0 92 ..................................... TCAAAATTCAGTAAGTATAGCAATCCTATTTGATTTGCTTTCCAGAGAGAGGCTCAGATCCCCGACTTCTTGAAGAAGTCGGGGATCTTTTT 5968693 37 94.6 0 ....T...............................A | C,A [5968696,5968704] ========== ====== ====== ====== ===================================== ============================================================================================ ================== 30 37 99.8 37 GTTGCAATTCATCTAAATCCCTATTAGGGATTGAAAC # Left flank : TCATTCGGTTCTCAAGTCTTATGGACAGTGGATGCAGTATTCTGTGTTTGAGTGCGATTTGACGCCTACCCAATATGCGAAAATGCGATCGCGTTTAGCTAAACTAATTAAACCGGATACTGACAGCGTTCGCTTTTACTTTCTCTGCGCCTGTTGTCAGGGAAAAATCGAACGCATTGGCGGCGAACAACCACGGGACGAAACTATCTTTTTTGCAGAGTCCCCTTCTAGCTAGGGTTTCGGACGTTTTTTGCGCGGATGGGTGGGTGTAGAAATTTGATGGCGAAAAAAAATGCTTGTATCCCAACCCCAGCAAGGTTTTCCAGCCTTTTTCACTTAAGATCGATCCGCGCAAACTCTGAAAAGCTTACATCACAAGGGTTTCAGCGTTTTTATTTTACTCCCTCTTTTCAAATCGATGGCTGGAATGGTATATTGATGATCGATCCGCGCAACTGCACCTTGAAAACTAAATATGGTAAGGCTTCCAGACCCCAGCG # Right flank : AAATGTGGAATATATGGAGTAATCGGAACCAGATTCTGATTCTCCCGGTCAAATTAAGTATAACTACGTAACCAGAAACTGCGGTAAGCTGGATGCATGAATTACGAAACTATTAGCGTCCAGTTTTCCCAAATTGGCACAGTGACGCCAATAACAACAATCAGAAGGCAAAAAAAGGACAATCCACAGAAAACAAAAATTGTGTAAATTGTGAATCTATCTAGAGTAAGAAAAAATCAGGCATAAATAAACTCCATTTTAAATCTATATGTAATTTCCGTGGATGATATTGTTCTTTTAGTAAAAACTCAATATAATGTCAGGGTAATTAAGTATACTCTTCCAGTAAAATGAAAAGAGAGAATTGTGTTTTAAATCAAACTTCAAAACCAAGCTTAAGTATCAAGCTTCTTACACCATTTTGTCTCATCTCCTCCCTATTATTAGGTGCAACTTCAGTTTCTGCCCAAGTTATAGAGTCACGCTTCTGCACAGCTAAA # Questionable array : NO Score: 9.09 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:-0.15, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAATTCATCTAAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : NA // Array 10 6629193-6628933 **** Predicted by CRISPRDetect 2.4 *** >NC_019757.1 Cylindrospermum stagnale PCC 7417, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ========================================== ================== 6629192 35 100.0 42 ................................... GCAACCCAAAATGTAGTCGCCTCCCAGGGGTTAGTGAAGAAG 6629115 35 97.1 37 .....................G............. AAGAGAGAAATTTAGAAACGATCCTCTTTCGTATTTG 6629043 35 100.0 41 ................................... TTTGGTGCGAGTTCGGGTGCACTGGGAAATACCACTGCAAG 6628967 35 97.1 0 .....................G............. | ========== ====== ====== ====== =================================== ========================================== ================== 4 35 98.6 40 TTTCCATCCCCGTTAGGGGAACTGGTTATGTAAAG # Left flank : AGTTACGGCTACTTATATTAAAGAACAGCCGACAGCAGAAAGATTTGCGGAAACACTTTTACTTATCTTCGATGTGCTTTCTCGCATTAAAGATTCAACTCTTCCAGGACGTCCCCGCTTAGGTTGGAAAGCATCACAAATCACCATCGGTGAGCCAATTTCTGTTACTGAACGCTGGCAAAAATCTCAAGGTGACAGACAGACAACTAGGCAAGGTATGAGCAATTTAACGCAAGAATTGCAAACCGCCTTAGAAAAGTTAATTAGTCCAGATTCCACCCAAAACCTCTAAATCTCCCGAAAAACCTCACCCTGTCCTACCGGACATCCCTCTCCTTGCGAAGGAGAGGGACGGTTTTGCGTAGCAGAACCAGGGTGAGGTTTTAGAGGGCTTTTCAGTAATCGGATAACTTGTGTGTACACCTTAACCCTAAATTTCCCGAAGAACCTCACCCTGTCCTAACGGACATCCCTCTCCTTCGTAAGGAGAGGGAAAGGTT # Right flank : AGTTCACCTTTGGAACGCTTGCTAGGAGCGGGTTTCAGACCCCTAAATCGACGTATCTCTTAAAAAGAGCAAAAGATTTTCAAAAATATCCCAATTTGGCAGCCTGAAAGCCTTACAGTACAAGGCATCGACGCATCTCAACTTTCATTATGCGGTTTTCAAGGTTCGGACGAGATGCGTCGATTAATTCCAACTCAACGTATAAAATAGTAACACGTGTTACTATTTTTGTCAATTTTACTTACACAAGTTGTAGGTTGGGTTGAGGGACGAAACCCAACATCATGGTTGAAATTGTTGGGTTTCGCTTCGCTCTACCCAACCTACGAAAATAGTGAAATAAAAAAAAGACAGGCAAGATGCCTGTCCTACAAGTTAATTATTTAGAATCTTGCAACGTTTGGTCTCAGATATGAAATAAAAAAAAGACAGGCAAGATGCCTGTCCTACGAGTTAATTATTTAGCAGAGAATTTAGAAATTCATTTCGGCTGCTTGGAC # Questionable array : NO Score: 2.79 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTCCATCCCCGTTAGGGGAACTGGTTATGTAAAG # Alternate repeat : TTTCCATCCCCGTTAGGGGAAGTGGTTATGTAAAG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-9.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 11 6782134-6781582 **** Predicted by CRISPRDetect 2.4 *** >NC_019757.1 Cylindrospermum stagnale PCC 7417, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 6782133 37 100.0 37 ..................................... ATTGCAGTGGCTAGCGCACCTTCTACATTTTCTTTAA 6782059 37 100.0 35 ..................................... CCTATAAAATCATCTTCCTCAGAAAGCACTACATC 6781987 37 100.0 38 ..................................... AACCATAGTAAGATGTAAACATAGAGGCAAGGAAGTAA 6781912 37 100.0 36 ..................................... GAAGTAGAGCTTAATCGCTGCAAAGTTCTTCTGTGC 6781839 37 100.0 36 ..................................... GAGATAGCCTACTTCCATCGGTTTCCCACAGAACAG 6781766 37 100.0 36 ..................................... TTGGTCAATCTGCGACCATCTGAGGGTGGTTTTTTG 6781693 37 100.0 38 ..................................... GCTCACGGGTAAATCACCAATGCTGAAGTGAATACCTT 6781618 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 8 37 100.0 37 CTTGCAAAACATCAAAATCCCTATTAGGGATTGAAAC # Left flank : CCCTGCTAGGGAAGGGGAGCAAGATTCAAAACTAGGGCAGGGGAGCAAGATTCAGAACTAGGGAAGGGGAGCAAGATTCAAAACTAGGGAAGGGGAGCAAGATTCAAAGCCTCTCCCCTTGTAGGGGAGAGGTTTGGAGAGAGGTCAAAGTGTATTGTATACAAGCGAAAAACGCTATAGCGCTTTGCTGTTAAGTCGAAGAAAATTGGCTAAAGTAGGCTCAATGTTTTTAACGCTAGTAGTACTCTAAAATCAGTCTAATAGTCTGTTGGTTGCGCGGATGGGTGGGTGTAGAAAATGAGGGGTGAAAAAAAATGGCTGTATCTCTCTCTATGCAAGGCTTTGAGGGCTATCGAACTGAAAAACGATCCGCGCACCTTATGGGGACTGGGTTTCAGCGTTTTTTATGTTTTGCGATCGCGCTGAAACGTGGTATGATTTACCCATCCGCGCAAATGAACCTTGAAAACCAAATACAACCAGGCTTCCAGATCCCAGCC # Right flank : AGGTGCTCGCAATTACTGCGAAATCACAAATGAAAACTTGCAAAAGTCAAACCCAAGTAATGATGCAAAAAAGTCTTGTTTGGTTGATCAGTTGGACAATAGCTATAGCATCTTTAGGATGCGGTCTAAATCGTGCCGAGTCATCTGGATTAGTTAAAGGAAAACAAACAATGGTACAGTTACCAATGGTTGTAGTGAAGGCGGATATTGAAGAAAACGCTGTTGAGCAAGTCCGCCTCGTAGGACGCTATGTCCAGATTGATGTGCGTCAAAGACCTGACTCTCCGCCGGTTTACAACGGCAATGTTGCATTGGTATTAGAGGATGGCACGGAAGTTTTACTGTACCCAGTTTGGCATGTGGAGGCAAAACGACCGAAGGAAGAAATCAGCCGATTTGAACAGAAACAAGTGACTGTGGTGGGAACTATTTTTCCAAAAGCTCCCTCCAACCCTAGCCATGCTGCTAATTTTTTGATGCCGTGTTTAACTGAAGTTCAA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTGCAAAACATCAAAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [61.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.5 Confidence: HIGH] # Array family : NA // Array 12 6914375-6915668 **** Predicted by CRISPRDetect 2.4 *** >NC_019757.1 Cylindrospermum stagnale PCC 7417, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 6914375 37 100.0 38 ..................................... GAATGATTCTAGAAGGGAATACGTCGCCGTACTCTGCA 6914450 37 100.0 38 ..................................... GCCTCAATCCGCCTTCTAGCCGTTTGAGGCGATCGCGC 6914525 37 100.0 39 ..................................... TTTGGAGCAATTGTAGCGATCGCGGATTTAACAGATTGC 6914601 37 100.0 34 ..................................... TTATTAGTGAGGATGAAAACGACTGGGCGATCGC 6914672 37 100.0 37 ..................................... ATTAATAGCGCCTACGGTGGCAGGATTTATCGTTACG 6914746 37 100.0 35 ..................................... CTAAAGCAGCTTTTTTACCTTTGGATACAGCATAA 6914818 37 100.0 37 ..................................... AGATTAACCCTAGTAGATTGGTCGAGGCGCAGGCGAT 6914892 37 100.0 34 ..................................... AATCTATAGCTACTGCGAAGGCTGAGAATATGGA 6914963 37 100.0 38 ..................................... ATTCTGATTCCACTTCAATAGCTAGTGCTGGCTTGGCC 6915038 37 100.0 39 ..................................... AATATTGGGGAAAAAGTTAGGGACTTAGTCAACTTAGAA 6915114 37 100.0 38 ..................................... CAGCAGAGAGTCTCATCGGGTGCTACTGAGCTTAAAGG 6915189 37 100.0 34 ..................................... TTTAGCTATACGGTCAAGGCATATCTGATGATAG 6915260 37 100.0 36 ..................................... TCCTTTTTTGGTCAGCAGTCGCCCCCTGCCCATACT 6915333 37 100.0 38 ..................................... AGCCATCATCTTTCACAAGGTGAATGGGATTGCTGGTG 6915408 37 97.3 42 ..............C...................... ATTTTATATGTTGTTTAATAGCAGCATACAAAAAAGCTTTAG 6915487 37 97.3 35 ..............C...................... ATGTAAATCTAGAGTAGGGTGCGATACCCACCCAC 6915559 37 97.3 36 ..............C...................... TAATCTGACTGCCACTCTGGGCAGACTTCATCAAGT 6915632 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================== ================== 18 37 99.5 37 CTTTCCGCTAACTAATTCCCCGCAAGGGGACTGAAAC # Left flank : CATTATTGAAAGTTCTTGCAGCCCGTTCTCACGAAGATGCCTACTACCGGGTGAACTATCGACATGGGGATAATAATGTAATGATGCGTTTACGGGCATGGCGTCCAAAGGCTGAAGTGCTTAGTCCTTGGGATTTGCGGCAAAGTATTACAGCTGATGTCGCTGCCGAATTTCAGCTTTATCAAGATTCAGAAAAACTATGAACACAGCAAAATTAACAAGTTCGTAGTAAGGACTTTAGTCCTTATTCCCAGCCAATTTTTTGGTAAAGTAACAAATAGGCTGTTAAACTTAGTTACATCAGCAGTTTTTTGGCAAACCGCAGCGGGGGCAAAAACCCTGGGGGGTTCGCCAAATCGCCAGAACCTTGACAATTCAATAGCTTGAAGGTTTCTATAGTTTCGGTTGGCAGTGTTTTGCACTCAATTTTTGTTCAGTATTTTGAGGTCTGCCAAATTCCTTTCTAGAGTCTGCTTCTAGTCTCGTTTCCAGAGGGCGGA # Right flank : CAGAAATTTACCAGATTTTTGCACAAACATACTAAGGACTTAACGGACAGGAAATAGTGAATATGGCGTATGGTTTGAGTGATTAAAAATGCTAATTGGTGCGTTAGGGAACGCACCCTACGGGTAGTAAAGAGACGCATTAAAAAAGCCTGGAACGAGGGTAATATCATGTTCGGCAAATTACTTTATATTCCCGTTCGCGGAGCGTGCCGTAGGCAAAGAAACCCACCCCGCCTTCCTTTGCGTTTTGTTTCCCCTCACTGCTTGCCTACCCGTGTACACACAAGTCTCTCTATGAAATTTATGGTTGTGCGAACACGGGAAACAAAACCTCACCCTGGTTTTGCGTAGCAAAACCTGTCCCTCTCCTTCGCAAGGAGAGGGATGTCCGTTAGGACAGGGTGAGGTTTTTTCGGATAACTTGTGTGTACACGGTAGCTCTGCTTGCGGGGTGGGGTGTTAGGATCTGTGGGTAGATCCTAAGTATTTAAACAGACCTG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCCGCTAACTAATTCCCCGCAAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.20,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [51.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0.27 Confidence: MEDIUM] # Array family : NA //