Array 1 219995-224563 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSAP01000001.1 Bifidobacterium pseudocatenulatum strain AF11-18 AF11-18.Scaf1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================================================================= ================== 219995 33 100.0 34 ................................. CGAAGGATACCGCTACTGCCCACGCCACCGCGGA 220062 33 100.0 33 ................................. TATAAGCCGTATCAGTTCCTCACGCAAGACGGA 220128 33 100.0 35 ................................. TAGATAACGTTCGTCGATATACGGCGGGAGGTTAA 220196 33 100.0 35 ................................. GCTTACGTATTGATGTATGGTGCCGTCTGCGCCGA 220264 33 100.0 35 ................................. CGTACTCGCGTTGGGTTTTTCAATGCTACCGCCTT 220332 33 100.0 37 ................................. GCCAATGTAGTGCGCCCAAATGTACCCGTCTGCGATG 220402 33 100.0 33 ................................. GAAAGTGGCGTAACGGTATGGACTGACCCCGAC 220468 33 100.0 35 ................................. GTTTTACGGCGTGTCGTTGTTTTGTTTGTACTATA 220536 33 100.0 34 ................................. TACGCCACCGAAGCGGTGTCCGAGTACGGACTTG 220603 33 100.0 34 ................................. CGCACGCGCGTGTATGCCGTGCTCAAGGGCATGG 220670 33 100.0 35 ................................. AGTGAATTTTACAATACTGTTGACCGTTGGCAGGA 220738 33 100.0 33 ................................. GATGCGGTTGAGGTGCGTTTCGAGCGTAGTGTC 220804 33 100.0 34 ................................. AGCGTTTGATCGGCTTGTACGTCCAGCATGCCGA 220871 33 100.0 34 ................................. GCAAAAAGTCTCGATGAATGAGGAAACTTTTTAC 220938 33 100.0 33 ................................. TACAGAACCACCGCGAACAATTTTTCCGAAAAA 221004 33 100.0 34 ................................. GCCGATGATCAACCCAAAGTCGGCCTTGACCTGT 221071 33 100.0 34 ................................. TTTTTCTGCTGGGACGAAATGCTGGAAACCACCA 221138 33 100.0 34 ................................. ACGTACTGGAAACTGCACGAACTCTATGTACGCA 221205 33 100.0 34 ................................. GTGAGCACGGTGCATTTGCCGGTATCAAGTCCTT 221272 33 100.0 34 ................................. ATATACTGATTGATACGTAAGCTTTGCCGCATTT 221339 33 100.0 36 ................................. ACCCCACTGTACAGGCTTACGGCGGCAGTACGCAAT 221408 33 100.0 35 ................................. ACCTATTGGCAGACCACCGACATATGGACGATATG 221476 33 100.0 34 ................................. GATGGCTCCCGTCTTCCAGCCGCCGAGCCAAGAG 221543 33 100.0 32 ................................. TTCTTCTGCTGGGACGAAATGCTCGAAACCTC 221608 33 100.0 35 ................................. TCGCACCTATTATTATTTGAGGAGGACTTTATGAG 221676 33 100.0 35 ................................. GCGCATTTTGTTGAGCACTTGCAAGCGCCGTCCGA 221744 33 100.0 34 ................................. ACCGCCGTGTGCTTGCCGGTGTATTCGCCATGCT 221811 33 100.0 34 ................................. ACCTTCGGGGTGGAGATTGAAATGGAATCCGAAA 221878 33 100.0 34 ................................. GTGCGATTAGGTGGGTGTAGTCGGAGATGATTAC 221945 33 100.0 35 ................................. TTCCGGACATGTCGAGCTGCGCACGTACAATTCAT 222013 33 100.0 33 ................................. CAAAAAGGGAAAATTTTTTAGCTTTACCGTCCG 222079 33 100.0 33 ................................. TGTCCGGCGATGGCACCGATCCGAATCTCAATG 222145 33 100.0 32 ................................. CACACGCATACTGCCAAGCATGGAGACAGCGT 222210 33 100.0 32 ................................. CACACGCATACTGCCAAGCATGGAGACAGCGT 222275 33 100.0 34 ................................. CGCGCCATCAACACGGAATACTCGCCGAGCACCA 222342 33 100.0 35 ................................. ACCCAGCCGGGCGCAGTGCATCGCGGCGAGGTCGA 222410 33 100.0 32 ................................. ATTGCGGCGAACGTTCTGCACGCTCTCCCGTG 222475 33 100.0 35 ................................. GCCGTACGGTCGAGGCCAATGTCAGGGCTTCGCGT 222543 33 100.0 34 ................................. AAGCGGGATTTCTGTGATCTCACCGAGGAACGGG 222610 33 100.0 81 ................................. GCCTCCAGGTCCTGGAAGCCAGAGACGCGCAAGAGCGTGGATTGAAATGACGCGGGCTGGGCCACCAAGGCCGACATCGAC 222724 33 100.0 33 ................................. GTATGCTGCGGGTCCTCGGCCTTCAACGCGCCG 222790 33 97.0 34 ...............T................. GGCTTTGCGTGCGGCAGCTGCGCGGTGTGCCGCG 222857 33 100.0 32 ................................. TCACCAATAATCATCAACCATGTGGCGCATGT 222922 33 100.0 33 ................................. CATTATGCGCGATATACCCTCTATCGGTGCGGA 222988 33 100.0 33 ................................. ATCGAGGTGTGCCGTGAGCTCTCGCATGCCGCT 223054 33 100.0 37 ................................. ACGGTCTGGCCGTTGGTATTGATGCTGGACGTGAAGG 223124 33 100.0 36 ................................. TTAAACACCCTCAACCGCTCTCCATCCCACCAACTG 223193 33 100.0 34 ................................. TGGATTGTAGCGTTTGAGCTTGCTGATTGCCTGA 223260 33 100.0 32 ................................. ATGCGCCACACCTTGTGGTACATCATGCGTTG 223325 33 100.0 34 ................................. CGCATCTACCATGCTGCCGGCGGCGAGGCGATAT 223392 33 100.0 34 ................................. CCGCCCTACTGGAGCTTATTGAGCGTATCCCCGA 223459 33 100.0 34 ................................. ACCGTGTACAAGCTCGCCAACTATAACGACGTCG 223526 33 100.0 35 ................................. GGCATCAGCGTGGTCAACAGCATGGGCCGTCTGGC 223594 33 100.0 34 ................................. CGTGAGGTGGGCGATGAGGGACTCGAACCCTTTG 223661 33 100.0 34 ................................. TGTCTGCCACGAAACCGGATTCGGCATACACGTT 223728 33 100.0 33 ................................. TTCGAGACAATAGTGAGGGGTATCAGCGCTCAA 223794 33 100.0 36 ................................. CGCACAAGAGTGTACGCCGTGCTCAAGGGCATGGAG 223863 33 100.0 33 ................................. GCGCAATCTCCAGCACGCACGTCTCATACTTGC 223929 33 100.0 35 ................................. CAGCTTCAGCAGTCGAGCCTGAGCCAAGTCACGCT 223997 33 100.0 36 ................................. TGCGCTGCGGTCAGACTGCGGAACTGCTTGAGTCGT 224066 33 100.0 32 ................................. GTGCTTGACCTCGACCCATTGCAGCAGCTCGA 224131 33 100.0 35 ................................. GAAGACGGGCCGTATGCCTCCGACTCCCGCAACAT 224199 33 100.0 34 ................................. ACGATAGCCATGGCGCTGCCCAGGATCATCGTCG 224266 33 97.0 33 .............................G... AAGGCCGCGTCCGTGCAGGTGCAGGCAGCTCAG 224332 33 100.0 33 ................................. ACGCAGGTCAGCCCGATCCTCGACCGCATCCCC 224398 33 97.0 33 ....T............................ AGCTGGGAGCAGTGCGTTCGCGCCGTACAAGGG 224464 33 100.0 34 ................................. GATACGATTAAGATGATTTTCGAGCGTCGTATCA 224531 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ================================================================================= ================== 68 33 99.9 35 GTCGCTCTCCTCATGGAGAGCGTGGATTGAAAT # Left flank : CAATACCGATGAGGACAGCCTGCGCTTTTATAAACTTGGCGCTCGATATGCGGATAGGATTGAGCATTATGGACGTGAACGGAGTTTGCCGGTTAATGATGTGATAATGATATAGCACAGGCAAAATGGCATGGTGCCATAACGATATGGTGTGGGGTATGCTGGGTTGAGCGTTTGAGTGTGCCGTCCGGTATTCAGAGTGTGTTTTCTAGCCAGCAGTATTGTGTTTTCGGCAAGGTGGCCGGTCTTGGAATGGTGTTTGTGCGAAGTGTAAGCGCTCATGATAAGGGACGTCTTTCGCACCTGAAAAACTATCGAAATCCGAATTGTGATTTTCGTGGGGCGTTTTGAAAACTAAATAATGGACATTAAAATGAGACAGAAAGCCAGTTGCTCGTTTTAGACATGTTGTTCGTCGTATCGGCGGTGTTGTTTGATATGCTTAAAGCTAGGCAGCTGGCTTGCGTCTCAAAAAACGGACAAAAATGTCCAGCTGCACT # Right flank : TCGGTGTCTGCATCGTTCCGGCCGCCGCGTGGATGTTGCTCTCCCTGTTTATGTCCAGTGTTCCCCGCACATGCGGGATTCCACATGTGCGGGACTGCTAGCAACGGAAAACCAGGGTTTTTGTCCGCTCGGGGCGACTTCAACGGTAATACGAGCAGGAACTGCGACTGGGTGTTTCGCATGGGGTCGCTTCTGAAAGCTATGTAAAAGAAATAGTGTATGTGAAAACGGTCGGGTGGGTGCGGATGCACGAGAAATTGGCTAACCTGTCGAATTTCTGTTTTACTTTGGTCGTTCATCTCGTGAGTGGTCGTCAAGCTAGACATATTGTGTCTCATGGGATGCAACATGTCATATGGAAATACATATGACTGGCGAATATCGCCAATGGTTCAGCCGGATAAAGGACCGGAACGCGAAAGCCCGAATCAGCGCGAGACTCCGATTGCGCTTCTAGATGGGGCGGCCGGTGGGTGACCTGCATACGGTTGGTGACGGGG # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCTCCTCATGGAGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCTCCTCACGGAGAGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.00,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //