Array 1 523640-524380 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP060429.1 Listeria monocytogenes strain 24618 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 523640 29 100.0 36 ............................. TCTTTAGTTGTTACTTGTTGGTTAATGAGATCTACC 523705 29 100.0 36 ............................. TGCTCTCTTTTGTGTAAAGCACATCAAGCATGTAGC 523770 29 100.0 35 ............................. GCGATTTTTGTCAAAGGGACAGCGATGGGTTACAA 523834 29 100.0 37 ............................. TTACCACCAAAGTCCCTACACTCAATACCACCAAAGC 523900 29 100.0 35 ............................. CGCTCTGACCTGTTCCTTGTGCAACACTCGTTACA 523964 29 100.0 34 ............................. TTTTCTACTCCTGCTTCTAAAATGTCGTTTATAA 524027 29 100.0 35 ............................. CTAAAACATCCTTCACTGTATCAACTCCTTTCTAT 524091 29 96.6 36 A............................ AAAATAGGAGGAAATAAATTATGACTATCAAATTAA 524156 29 100.0 35 ............................. TTTGTTGAATCAACGGATATAGATTTTACAATTTC 524220 29 96.6 37 ................A............ TTGGTTCCTTTGGAAAACAACAATAACGTGTAGTATT 524286 29 75.9 36 ......T.C.A.C...CA...T....... GCAGAAGCAGCAAAATAACCAAAAGTAATGACTTTC G [524309] 524352 29 79.3 0 ......A..T....AGA......A..... | ========== ====== ====== ====== ============================= ===================================== ================== 12 29 95.7 36 GTTTTAGTTACTTATTGTGAAATGTAAAT # Left flank : CGTCCGTGCCACTACTTCAGCTGATATTTTACTTGAAAAAGGTGCCGTAGAAGTTATCGCTTGCGCAACCCACTCCGTCATGGCTGGAAACGCAACCGAACGCTTACAAAACTCCAATATCAAAGAAGTCATCACATCCGACTCCATCGATCTTCCAGAAGACAAGCAATTCGACAAACTAACAACCATCTCCATCGGACGAATCTTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAGAATAAGCAGAAAACAGTAACTTAGTAGAGTTGCTGTTTTTTTGTTATCTGTCGACCTCGAGTAGCGTGAAAAATACCGGGGATCGACAGAAAGTTGTAAGTGGTTGGGGTGGAAGAAGTTTGGCGGTATTTGCTTGGGGGAAATCTTCCGGATAAGAGGAGATTTTAGATGTTTTTTGGTAGGTCGACAGAAATAGCTCTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGTGG # Right flank : TGAAAACCTGTTATACATAGGATTATCTATTTCCGTTATAATTATTCCTTGCAAATAAATTCCAAAAAACAAACCCCTCATTAATTGGGTTTGTTTTTTTGTGAATAATTATAGTCAAACGAGCAATCTGTTAACAATTTAGCAATAAACGCAATAAAAAGCCGTTTTTTCACTATGGATTGTACTATAAAACATAATCTACCTATGCTAAAATTTAAGGGAAGGTAAGCTGAATAATACATATAAGGAGGACTCTACTATTGAAAAAGATTCTAGTGCCCATATTATTGTTAGCAACAATCTTAGCAAGCTGTTCCTCGCCGAATGAAAAAATAACCAAAGACACTAAAATATCCAAGACTATTACAATAAGAGCAGATTACAAAGTTCCAAAAGATATTAAAGAACTTGAGGATGATAGTGCTAATATTGTTAAAGTAAAATTTCTTCAAAATAAAACGATAGGCAAGGATGGTAGTACTATCAGCGAGATAGAAATT # Questionable array : NO Score: 6.05 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 2601926-2599908 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP060429.1 Listeria monocytogenes strain 24618 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 2601925 36 100.0 30 .................................... TCGTGATTTCTTCCTCATGCGCGCTTTTGA 2601859 36 100.0 30 .................................... TTATCAGCAATTGAAACTATTAAAAATGAC 2601793 36 100.0 30 .................................... CCTAGACCTAGATGCTACTAGAGTGGACGA 2601727 36 100.0 30 .................................... TAATGCATCTTTATATTGATTTACCTCACC 2601661 36 100.0 31 .................................... TGGAAATGAACGATTGTCGGCATTCACGAAT 2601594 36 100.0 30 .................................... AGATATGGGCGAACTACCCGACGACAACAA 2601528 36 100.0 30 .................................... GAAGAAGTCACTAGTTGGGTCAAGCAAGGC 2601462 36 100.0 30 .................................... TAGTGCCAGTAAATTCAGTTCCTCCAAAGG 2601396 36 100.0 30 .................................... TGTAAATGCGTTTAAATCGATGGGAAGCGC 2601330 36 100.0 30 .................................... ACACGTGTGGAAGAAGAGGGCTCTGACGCT 2601264 36 100.0 30 .................................... GTATGAAACGGTTAAATGGATCTCTATAGC 2601198 36 100.0 30 .................................... TTTAATGATTTTCTTTTGCGCGCCGTTGGT 2601132 36 100.0 30 .................................... GAATTTTTTTGTAAGATCGACAACTTTTTC 2601066 36 100.0 30 .................................... TTGATAATGATAAGGCTGTACGGATTATTC 2601000 36 100.0 30 .................................... TAACAGTGTATTTCTATTGCTCGGTGTGTT 2600934 36 100.0 30 .................................... TGGAGATAACGAAGAGTAAAGCGAGGCAGC 2600868 36 100.0 30 .................................... GCGTTGAACCAGAAGGTGGGAAAGAAACAC 2600802 36 100.0 30 .................................... TGGTAATTTAGTATCTATTACGGCTGGGAA 2600736 36 100.0 30 .................................... AGTTCATGCAGATGTTCCAACAGACTATGA 2600670 36 100.0 30 .................................... AACAGCTCGGTTCACAGCCCAAACAGGCGA 2600604 36 100.0 31 .................................... TAGCATCCCTTTGTTGAAAACATAGTCTGAA 2600537 36 100.0 30 .................................... TTAAATTTCCCTTCTAACACTATCTATCAA 2600471 36 100.0 30 .................................... ACGTGATGGTCCTTGGAAAAGGAGATTACT 2600405 36 100.0 30 .................................... TAGTTATTTGCTTAGAAATGTCATCCATCA 2600339 36 100.0 30 .................................... CTAGAAGCTTTGACATTAATATTACGCTTA 2600273 36 100.0 30 .................................... AAATAATTTTTTTGATCATGTTGCAACAGC 2600207 36 100.0 30 .................................... TGCAATATTGTCTGGATCTTTTTTCTTGTT 2600141 36 100.0 30 .................................... AGTTAGATAGATAAACAAACTAAACAAAGG 2600075 36 100.0 30 .................................... TAGTTTTTCTTCGTCCTCTAAACGCAAGCT 2600009 36 100.0 30 .................................... TGTCTGAATGTAGTTGATATCTTTAACTTG 2599943 36 72.2 0 .........A..CA.....C.....A.C.A..C.TA | ========== ====== ====== ====== ==================================== =============================== ================== 31 36 99.1 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAGCTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACGGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACCGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : GAGACAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAAACTATCTACATGACACAGTATCACTATCTTGCTTCGAAGTCGCTCTTAGAAAAGGACGGAGAAAAGTTTCCTCATCTCTATATATACTAGAGTGGCTTAGACTTCTTAAATCCGAATTTTGAAATGAATGTTGACCAAGATAAAGATATAAATAAATTGTTTCCCTATTCAATTCGTTTCAACTCAACTTGCAAATTTCAAGTTGCTACAAGCAAAGGGGATATACCGTTGAAAGTGGAGGAGCAAAATAATTGTTACGAGACCAAAAGTTTAAAAATTTTATATGATTATATTCTAAATGCGAGTAAAAATGGTGACACGCTTGAACTATATACTGTTTGGACAGCGAGAAAGATTTACCGTTAACGCACAAACCAGAACTGCTTTAACTATCGGAAATCTAGTTTTAAGTGACAGAGAGCTATTAATAATTAAAAGTGAGACAC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //