Array 1 2954-2678 **** Predicted by CRISPRDetect 2.4 *** >NZ_NKKY01000093.1 Lactobacillus crispatus strain RL25 RL25_93, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 2953 30 100.0 31 .............................. TCATCTTGAAGGGCACGGGAGACAAGGCAGA 2892 30 90.0 32 ...........ACA................ CTGTTAACGGTGATGACTGGTATCCAGTTAGC 2830 30 96.7 31 ............T................. CTTTGAGCTGTGTCAACGCCACAGCCGTTTA 2769 30 86.7 31 ...........ACA..............A. GTCGTTACATCAGCCAAAAGATGAGGCTTAA 2708 30 70.0 0 ...........ACA.........A.ATAGC | C [2681] ========== ====== ====== ====== ============================== ================================ ================== 5 30 88.7 32 GTATTCTCCACGAGTGTGGAGGTGATCCTA # Left flank : GTTTATACCCAACACCAGAAGATGCAAGTAATGATTGTTACTCAGCACCCACAGCATATTATCGATGGTATTCAAAACCGGATGCATAGAGGAATTACCATTTTGCATGATGCTGAAGGTGCATACAGTCATATTGAAAAGACAGTTTTGATTACCATTATTGATCGATATGATATGTATGATATTCGCCAAATCGTGCAAGGAGCAGATCCGTATGCTTTCATGAGTGTTAGTGAAGTTGAAAAAGTATATGGTCGCTTCAAGGAGCAAGAAATCGTTTAATGGATAGCCCTTAAACCTTGATATATAAGGATTTATAAATGAAATTTGAATCCTAGGGGCACTTTGGGAGCAAAACTATTCAAAAAGAAGCAGAAATGCTTCTTTTTTATTTGGAGTGGCTTTTTGTAATTATGGCTTTATTATTGGTCTTTGTTAAAAGTGATTAAAAATGATATTATTTCGATTGAGGGATGTTGATATATCGTGGATCATTTAGT # Right flank : TGCTCTGAAAAATATGTTCTATAGAGTGACTGTTTTTGTATATTATTTAAAAATATTGTTGATGGTGCACGGAGATTGCGTTCACTTATATAGTGAAAAGATGCTAAGAAATCTAAAATAGAATCGAGATGAATTGGTAATCTGGTAATCGTAAGAAGGACTTAGCTACTAATCGTTGTATTCAATTTTGATAACAAATTAATTAAAGAGCAAAAAATATGAAGAATTATAAATTTAATAAGTTTATGTAAAAACAGTGTCATTAAGTTAGGCTATTGATTTTGGTGAAAAAACAATTAAAGCATCATTTGGCTTTAGACGGCCAGATTGATGCCCTTTTTGGCATATTTTTCTAAATATCATTCGCGTTACACGTAAAAGCGTGTGTTGTATATAGTGAAAGGAGGCTAAGAGAATCGGAGCTAAGAGGTGACAAATATGCCGAAAGCCTATAAAATTAACTCATACTGGCAAAAATACTAAATGGTCATTAAAGTTCT # Questionable array : NO Score: 3.71 # Score Detail : 1:0, 2:3, 3:0, 4:0.66, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGAGTGTGGAGGTGATCCTA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.70,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA // Array 1 50913-50427 **** Predicted by CRISPRDetect 2.4 *** >NZ_NKKY01000092.1 Lactobacillus crispatus strain RL25 RL25_92, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 50912 36 100.0 30 .................................... AGTAGTCTCCAATTCAAAAGGTGCTTACGT 50846 36 100.0 30 .................................... AAGCACTTGAATCTTGTCCCTGCTAGGAAC 50780 36 100.0 30 .................................... TCGAATTTAGAAAAATCAACATTAACGCGG 50714 36 100.0 30 .................................... CCGTGAAAACGGCGTTTACATGCGTAAGAC 50648 36 94.4 17 ..........G....................G.... TATTAGCTTTTGCGGCG Deletion [50596] 50595 35 80.6 30 ..ACC.A.C.G..-...................... TAAAGAAATAAATAATAGAGGTGTGAGGTA TGC [50587] 50527 36 100.0 30 .................................... CCACTATCGCGCCTGGAATACCTGTTTTCT 50461 35 83.3 0 ......................-..G.AG.C...A. | ========== ====== ====== ====== ==================================== ============================== ================== 8 36 94.8 28 GTTTTAGATGATTGTTAGATCAATGAGGTTTAGATC # Left flank : CAAGCGCAAAGCTAAGCCTAAGGCAGAGTTTCCAACTGAACAGTCGCTTGATGCTTTTATTGGCATTCAGGCAATGAGCTACAATGACCGTTATTTCAATCGAATTCATAAATGCTTTGGTCAGGTTCAGGACACCTTAGAATCCTACTTTGATTAAATAAATAATTAAAAAATCAATTTACGAGAAAGATCTATTTACACAAAAGATTTGACAGTTTCATGTTAACACCATATGCTATAATTGAAACAGTTCTTAAGATTCATCAAGAATATAATCTTGATAGTATTCCCGTGTTTTGTAATGTAGCTCATTACCTTGATGAAACACAGTTAAAAGAACTTAGTAAGATTGTTAGACAACTTAAATTGAAAATTATTTTAATTGAATTCACAGATAAGAAATATGGGGTAGCAGTCAAGGATGCTCAAGTTGCATATATTGATCGAGATCTTGTTGATTGGTATTAGACAATTGATTAAAAAGATATTATGAAATATCG # Right flank : AGTAATATGCATAAATTTACAAATATTTTTCTGTAAATAAAAATCGCTCTAGAGAAACTCTAGAACGATTTTTGGACATACTTGATCTTAGTATCTATTATTACTTAGCGTAATCATCAATACCCAAGTGCTCCAAAATAAGTGCGGCAGTTTCTTCAATGGAGCGGTGAGCAACATTAATTACATAGCAACCTAATTTCTTATAAAGTGCTTGTGCTGATTCAAGCTCCTTGTTGATTGAATCCATATTAGAATAAGTAGTATCAGGATTCAAACCATAAGCGATCATTCTTTGACGTCTGATTTCGTTCAATACAGATGGATCGTTAGTCAAGCCAATAATCTTCTTAGGATCAATTTCGTAGATTTCTTTTGGAATGTGAGTTTCAGGAACAAGTGGTAAATTAGCTACCTTTAAGTTCTTATTGGCTAAGAACAAAGAAAGTGGAGTCTTAGAAGTTCTTGATACCCCAAGTAAAACAACGTCAGCTTCCAAGAAA # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:-0.17, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATGATTGTTAGATCAATGAGGTTTAGATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGATGATTGTTAGATCAATGAGGTTTAGATC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.70,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [16-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //