Array 1 145436-147050 **** Predicted by CRISPRDetect 2.4 *** >NZ_LVPK01000070.1 Escherichia coli strain sheep15 sheep15_contig_85, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 145436 29 100.0 32 ............................. GCATTGACGCTTTAAACGACGACGGACGCCAC 145497 29 100.0 32 ............................. AAAACAGCCTTTAGATTAGTACCTGACGACCG 145558 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 145619 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 145680 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 145741 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 145802 29 100.0 32 ............................. GTCTGTGATGGCCTGCTCGTGAGTCCGCGGCG 145863 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 145924 29 100.0 32 ............................. TGCGCCGTAGCGTGTCCACCTATTGTAGTAAA 145985 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 146046 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 146107 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 146168 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 146229 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 146290 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 146351 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 146412 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 146473 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 146534 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 146595 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 146656 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 146717 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 146778 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 146839 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 146900 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 146961 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 147022 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 27 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 162552-163252 **** Predicted by CRISPRDetect 2.4 *** >NZ_LVPK01000070.1 Escherichia coli strain sheep15 sheep15_contig_85, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 162552 29 100.0 32 ............................. CGACAAAATTCTCAAAACTCGATCAGGAAAAT 162613 29 100.0 32 ............................. CCACCGTTTTCGCCCACCAGGGCGCACAACCC 162674 29 100.0 32 ............................. GAAAAAGAGAAGGTAGAGAAAGCGGAATCTGG 162735 29 100.0 32 ............................. CAGGTCTATCGGGCGATCAATAAAATCGGTCA 162796 29 100.0 32 ............................. GCGCACCGTTGCGTCGAAAAGGCGCTGGAGAT 162857 29 100.0 32 ............................. TACGCTTACACAACGGGCGAATATTTTAACGG 162918 29 100.0 32 ............................. GAACCCAATAGTGAAATACAGCATCATTTTTT 162979 29 100.0 32 ............................. ACCTGGAGGCGAAAAAGGCGCTTCGACGTAAA 163040 29 100.0 33 ............................. GAGGCCTATATCTCTAACCGCATCGGGCTGCGC 163102 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 163163 29 100.0 32 ............................. CTGCGTAGCGACCTTTGCTCTCAATTTCGTTG 163224 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 12 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAACAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAATCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAGGTTATGTGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCCAACCCATCAAGACGCCTTCGCCAACTCTTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCAAACCTGACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCGGTGCCTTTCGGATAGTTTTTATTCAAACCAGGATTGGTCGTCGCGGCTATTCCCTGACTGCGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //