Array 1 29430-28520 **** Predicted by CRISPRDetect 2.4 *** >NZ_LIRO01000096.1 Limnothrix sp. PR1529 contig_56, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 29429 37 100.0 35 ..................................... CGTTGTAGGCAAAAACCAGGACAGGTGGCTCGCAC 29357 37 100.0 38 ..................................... ACAGAGTTGGATGATTCGATCGCGAATTACGTCGCCTT 29282 37 100.0 38 ..................................... GGATTTGGGACAATCTGGGCGTGGCCCATGTGTTCGGC 29207 37 100.0 35 ..................................... CCAGTCGGCTGGGTAGCTGTGGACTGGGATACCCC 29135 37 97.3 36 ........................T............ CCAGATGGTTTGCTCAACGGTCGATCGCCACAGGGA 29062 37 100.0 32 ..................................... TCCGATACCGTAAACGGCCATGGTTGGCTCCT 28993 37 100.0 37 ..................................... ACGCGCACCCTCACCACCTGGTGCGGTGTCCTGACCG 28919 37 100.0 36 ..................................... CCCTGTCCCAATCCGAGTTTGATGCACTGGTGTCCT 28846 37 94.6 42 ........................T.....C...... TACATTTTGCGCCCCTACCGTACCAAGCGATCAACCCGTAGC 28767 37 89.2 39 .T................T..T........C...... GTCTTTAACCGATTGAACTAGACCCGTGAGCCAACCCCA 28691 37 86.5 35 .T................T..T..T.....C...... AAAAACGAACAATAAACAGCGCAACGCCTTATGGC 28619 37 91.9 26 ..................T..T........C...... GGTTTTTCCTGCCCCGGTCGGTGCTG Deletion [28557] 28556 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================== ================== 13 37 96.9 36 GATGCAACGGAAGTCTGACTTGGGCGATCGTTGCAAG # Left flank : GTGGATGGCAGGGCGATCGAGATGCGGTTGGAAGTGCTAACATACTGGCACGATCAATTGATCCGGCTTGGCCGGATTCGGGGCGAATTGTACCCCACACTTTAAAGCCGCTGGCAATCAGTCCAGCGATGAAAAAAGCAGGTCGGTTGCACGTTGGCGCAGCCAGACCCCAGCCCCTTGGAGGGCCGCCCACCAGTCGGGAGGTGGGATGTAGACCGCCTGAGTGCGTTGATAGGTCGCCACGCATTACGCGCGAACCGGAAGCTACGGCCGAAGGTCTGGTGGCTGAATCGACCCGAAAGCCCCGCCCAGCGGGAAAGACGGCGGTGAGGGCCGATAAAAAGGTTCGCGCGAGTCGCGAAAGCCTTGCCCCATCTGCAATCCCAGCATCGGAAGGATTGCACGACGATCTAGCCAACACCCAAAAACAGGATACCCGTAGCAGGTTCGCGCAACAGCCACCCGAAACGCCCGTCCAGCTTAATTTGTGGGATTTGGCG # Right flank : CGAAGGGAGACAGCTAGCTGTTTTGCATCCCCTCAATCATCTTAATCACCCGCTGCATCTCGGTTTGTAAACCGGTAATCTGGCTTTGCAGCGGCTCGACTGTTTGGGCGATCGCCTGCTGAATGCCATGGTCGATCGCCGCTAGGATTGAATCAGTGCGGTCTTCCAGTTTTTGATCAAGCTGCTCAATGCGCTGCTCAACGTGATCTACACGCTCAGTTAACTTTTGATCAAGCTGCTCAATGCGTTGCTCAACATGATCCACACGCTCAGTTAGCTTTTGATCAAGCTGCTCAATGCGTTGCCCAACATGATCCACATGCTCAGTTAACTTTTGATCAAGCTGCTCAATGCGTTGCTCAAAGCAATCCATGCGTTCAGTCAGCCCCTCGATCGCCCGAGTTAGCCCCTCGATCGCCTTGCTATTACTGGCCGCCAACTCTGCCAAATGATTAAACCGTTGGTTCCACTCAAAGGATTGCTGAGTGGTGATGCTGGCC # Questionable array : NO Score: 3.09 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATGCAACGGAAGTCTGACTTGGGCGATCGTTGCAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 1 2332-2514 **** Predicted by CRISPRDetect 2.4 *** >NZ_LIRO01000024.1 Limnothrix sp. PR1529 contig_67, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 2332 36 100.0 35 .................................... CTGTATGCCGTCTCCCGTGACGAGACCAAGCAACT 2403 36 100.0 40 .................................... TCGAACTGGTTGGTGCAAACGGTGTTTAGGCTGGTGGTGT 2479 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================== ================== 3 36 100.0 38 GTGATCAAACCTCTGATGCCGTAAGGCGTTGAGCAC # Left flank : GGGAACGAAAGCAGCAACCCCCCAGAACCAGCCAAAGCCCGCACAAACGCAACCGACCGGGCAGCAAACGAGCCACGGCCACAACCGAACAGCCGCGCCCAAAACACCCGGCACGCGCGGGCCGACCGCACGGCAGCATCCACGCCGCCAGCACAACCGACAAACACCGGAACAGACCAGGGCACGGCGGCGAGGGCGGGGGCAACCCACGGCGAAACGACCGAGCGGGAACCCGAAAAACCCACCGCAGGGGCGGCGGCCAAAGCAGAAACGACGGGAGCGGGCAACGGCTGAAACACAGGCGGCAACTGAACTCTAGCCGTTATTGTAGCACGAACGAGCTACAAAAGAAAAGGTTGACAGCGGAACGGAGCCGGAGCACCCTGCCCCTCTCGCTTCTCTCCGATCTCCCCTTCCAAGTTCGCGAAGCGAGCGCCCCAAGAGAGGCAAAAGCCCGGTAGCAGAGCGGACGGGCTATACTTGCCGACCGGCGCGAGCGG # Right flank : CAGCACCGCACAGCACCGCACAGCACTCGTTTCAGCCCTATTCCAAACTTTCCAATCCCGTGAGGTGGTGAGTCTGTCGTCAGATTCGCCACCTCACCTTTTTGATCGCCTCCACCTCCTTCAAATCCTTTCGCATCAGTAGAAACCCGTACTCCCCAAAATCGGAGTTTTAACCCGCCGATTCATACCTGGCTTACTCTCCGCCGCTCTTCGCCTCCGCTTCGTCACCCCCCGATCGCCTGTGATCTGTCACCATGCCACCAATCGATTCAGAAAACGCCCATCTTTCGCGTTCATTAGAGAGCGAAAATCAGCCGAAAGATAATCTTTGCATTTTCGTCTACTCCTCAATTCTGAAGCCTATTCTGTAACCTTCGTCTGGAAAGTCTTGTTCCAATCGATCGACTGCGGTTGGCTGTCTCTTAGGTTTAATGAAACTAATCAGGAAAGCTTGCGACGATCATAGGTTGCTGAAATATTTGATCGCTTTGCATTCATGC # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGATCAAACCTCTGATGCCGTAAGGCGTTGAGCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.80,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [33.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 27181-28023 **** Predicted by CRISPRDetect 2.4 *** >NZ_LIRO01000103.1 Limnothrix sp. PR1529 contig_111, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 27181 36 100.0 37 .................................... CTGCTGAGACCGCTGTGATTGCCAATTTGTTGCTTGA 27254 36 100.0 38 .................................... CAGCCCTCTGGTCTGCAATCAAATCCGCAATCAGTCTC 27328 36 100.0 34 .................................... TGTATCCAGGATTTTTCGGGAACATAATCTAACC 27398 36 100.0 37 .................................... TCGCTGATATTGAAGGCTTTATCGAGGAGTTTTACCC 27471 36 100.0 37 .................................... GAACGGGCGATAGCCAAAGGTGGTCATCGGAATCCCG 27544 36 100.0 36 .................................... GAATTTGATGGCAACTGAGCCTCGAATTTCTGCTTC 27616 36 100.0 42 .................................... ATGGGTGATTTCATGCAGAACCGAAAGCGGGGACGCAATCAA 27694 36 100.0 34 .................................... CAGTCGGAGGGGCGAATTGATCGCCCAGGAAATG 27764 36 100.0 39 .................................... ATCTTCGGGACGGTGGCGATTAGCGCCAAAGTCGGCCAT 27839 36 100.0 37 .................................... TAACCGATGGTAGAAGTTCGGGTGATTTGCACCGGAA 27912 36 100.0 40 .................................... CCAACAGTGCCCGATGGCGGAAGCTGAGTAACGAGAAGGC 27988 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================== ================== 12 36 100.0 37 GTGTCCAAACCTCTGATGCCGTAAGGCGTTGAGCAC # Left flank : CCTCCTGCGCGATCGAAATGCGGCGGCAATCGACTGGGAACGACTGGCGGACGAAATTGAAAGCATGGGACGACAGGAACGCAGGGAACTCGTCAGCCGGTTACGAATTTTGTTGGGGCATTTGTTGAAGTGGCGCTATCAACCCGATCGCCAAAGTCGATCGTGGATGACCACCATTCGAGTGCAGCGGTTGGAAATTCGCAAGCTGCTGGCCAAAAATCCCAGCTTGAAATCAGCGATTCCCGAAGCATTTGCGGAAGCCTATGAGTTGGGGCGACTGTTGGCGATCGATGAAATGGGTTTGGAAGACTATGAGGAAAACTTAGTGCCGTCAGAGTCGCCGTTTGATTGGGAATTTGTGCTGAATTCCGATCAGTTTGATGCGCCGGATTTGATGCATGAATGATCGAATGGGCGCGTTGAGTGATCGGGGGCGATCGGGTAAGATGCTTGTAAGGTTGCATTTCGGCGCTTGTCCCGAAAGGGTTCCAAGCGGCGCT # Right flank : CATCGACGATCGCAGGGAAAGGCCTCAAACCTCTCCCTGATCGATCGCCCCACCCACTCTTCAACTCAACGACAACAGCCGCCTCAGCAAGCTCATCACCTCACCGGGATTTTGGGTCGGCTGCATCGGTGACCACTCATACAACTCCGCAAAGCCGCGCAGATACAACACTCGAATCGTGTTTTCCACCGCACGCGGCGACCCAATCACCATCACCTTCACCGTTTCGCGCCCATCCAATCGCGCGGGCAGGGAATCGAGCGCGGATTGCCCCTCAGTCAAGGATTCCGGGGCGATCGGCGTTTCCACAAAGTCAGTTACAGTCGTCATGGCCGTTCCTCCTGAAATGAATTGGCCGTCGGCACAAGCAAAGCAAGATCAATGAGGCATCAGTCTCTATCCCCCGTTGAATGTGGGATGTACAACAGCTTTGTCAAATCTCACTTACTTGGACTTGCCTTAAGTTTAATAGTCCAATCTGTATACGTCAACCGATCAAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTCCAAACCTCTGATGCCGTAAGGCGTTGAGCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.80,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [45.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 51005-48783 **** Predicted by CRISPRDetect 2.4 *** >NZ_LIRO01000039.1 Limnothrix sp. PR1529 contig_29, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 51004 37 100.0 38 ..................................... ATCAGCCAATTTAGATTTTTTAGGGCCAGATTTATATT 50929 37 100.0 37 ..................................... TTCCCATCAATCTCGGCAATGCCAAGCGCCCCATCAG 50855 37 100.0 36 ..................................... GAGGTCAGAAACTCATAGGTACGGTAGTCCATGAGG 50782 37 100.0 35 ..................................... TGTAGTCCTTGATTCGACCAACTCATAGCGCCTAG 50710 37 100.0 34 ..................................... AGTGTCAGGGTTGCAGACCAGCAGCCCGATCATC 50639 37 100.0 35 ..................................... TCAGGTAACAGCCCCGACAAGGCCCGATCAAATAA 50567 37 100.0 39 ..................................... CCTAGCATTGGTGAGCCATTGGTCATACGCGGCCGAAGG 50491 37 100.0 35 ..................................... CTTGCATCCCAGCCGTCACCGTAAAGCTCGGATCG 50419 37 100.0 37 ..................................... ACCCATAACGGATTAACGTTCGAGATCGGTGTTCCCG 50345 37 100.0 36 ..................................... TCGTCCAGGAAATGCAATTTTGCAACTCCAAACAGG 50272 37 100.0 36 ..................................... ACCGTCCCGTCGTCGCATTGCACAACGCAATACTTA 50199 37 100.0 35 ..................................... AGCAGCTCATCTTTTTCGCTCTGGGCCTTGTCCAG 50127 37 100.0 38 ..................................... ACCGTGTCGCCGTCTGAGACTGATTCGATCGACCAATT 50052 37 100.0 38 ..................................... TTAAGTCGGCTGGCCGACTGCTGAGTGGTGGCGATCAC 49977 37 100.0 35 ..................................... AACCAAGCTCAGGCTGCGATCGCCTCGCTCCAATC 49905 37 100.0 34 ..................................... TGCTGAGGATAATGCAACCAGGGCTGCAATTGAT 49834 37 100.0 30 ..................................... CTTGCGGATCGCATCGCCTTGGAATGCCTT 49767 37 100.0 37 ..................................... TGATTGGCGGCGATCAGGCGATCGGCTCAATCTCAGT 49693 37 100.0 36 ..................................... AGGTAGCTCTACCCGCTCCTGGATCCACCTTTCGGC 49620 37 100.0 38 ..................................... AGGGTCACCCTCCATGAGGGCCCGCTTCAGGGCCGCTT 49545 37 100.0 36 ..................................... AAGGTCGAAGAGCGCAAGGCGCGAAATGGTCGGAAT 49472 37 100.0 37 ..................................... GGTAGTGTCTGGCCGTGGCCATGGCCTTGTCGCGCAA 49398 37 100.0 37 ..................................... ACCGCGATACCATCCAGCAGCCAACAACCCTAAAGCG 49324 37 100.0 35 ..................................... ACACCGATGATCCACGGTTGGCAGAGCGGGCCGCT 49252 37 100.0 35 ..................................... GCCGCACACTGAGCGTCGTATCCCCCAAACACCCG 49180 37 100.0 36 ..................................... AGACCTAGCGATCGGCACAATTATCAACGAAACCAA 49107 37 100.0 35 ..................................... CAATCCCTGCTTACGGGTAGGGCTGGCAAGGTGAC 49035 37 100.0 37 ..................................... AGGATTTGCAGCGTTCCAGCCCTCATGTTTTGGATCT 48961 37 100.0 36 ..................................... GGCTGTCACACCACACCCCGCCCCGATCGGTCTATT 48888 37 100.0 32 ..................................... GATAGGGACACCGCCCACTGTGGCGATGTCCC 48819 37 91.9 0 ................A........A.A......... | ========== ====== ====== ====== ===================================== ======================================= ================== 31 37 99.7 36 GCAGCGCCCGGCCCCCGGGCTGGGCGAGGATTGAAAC # Left flank : AATCACACGAGTAGCAGTTGCTGACGCGAAGGATCGTGAAAAGCTACAAACGATCGGGCGCAAAACCAAAATCTCTTACGGTCTATATCGAGGCTATGGTTTCTTTTCGGCTCCTTTGGCCAAGCAAACCGGTGTGACCGATCGGGACTTGGAACTGTTTTGGGAAGCGGTTCAAGGAATGTTTGAAGTGGTGGATCGATCGGCTAGTCGCGGGCTAATGGCTGTGCGTGGGTTATATATCTTTTCCCATGAAAATCCATTGGGTAATGCGCCAGCCCACAAATTGTTCGATCGCATTTCGGTGCAAAAGCGTCCTGAGGTCGATACACCGCGATCGTTCGATCACTACGTCATTGAACTAGACGAAACAAATTGGCCCCAAGGAGTCACCCTAACCAAGCTGATTGAAGGCTAATTAGGCCTTGGCGGAAGCCAACTCCCAACCTAGTTGGCTTCCGCACATTTTCTTATCTTTTGGTTCAGGCCAGTTCGTAAACCCT # Right flank : GAAAGGAGCGATCGCGTGAGTTTGCTCGATGATCTCAGTCAGTTTTTAGAAGCTCGGCTAGAAGCCTTTCTGCGCGAACATCCCGAGCTAGAGTTGCGGGCCCTAGAAGAGCAACTGCGGGAACAGGAAGCCGATGCCAAGCGATCGATCGGGGAATTACACACCCAAGAACAGCAACTGAAAGCCGACATTTGGGAAACAGCCCAGGACGTGCAGCGCTGGCACATTCGCATCGAAAAAGTGGAAGCCGCCGGAGAACACCAACTCGCCGCAGCCGCCCGCGAACGAGAAGCCGCCCTCTTGCGCAAAGGCAATCAACTTTGGGGACAAATGCAGGGCATTAAAACCCGCATTGAACAGTTAGAAACCCTGGTCTCGCAACTAGCCAGCAAACGGCAAGAGGTGGCCGCGCGGGCTGCCCAAGCCGATGCGCAAACCCAGGCCCAAGCCAAGACCCGCACCAGCCGATCGCCCTGGGACAGCAGCGATCGGGCAACCTA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCGCCCGGCCCCCGGGCTGGGCGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.70,-17.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : NA //