Array 1 4131-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADVLL010000010.1 Acinetobacter baumannii strain ACIN00234 ACIN00234_c0010, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =================================================== ================== 4130 28 100.0 32 ............................ AGCACAAAATTTATGGTATACAAAAGCAGCCA 4070 28 100.0 32 ............................ TCTGATGCGATTAATTCTTGAATGTTCTCGGC 4010 28 100.0 32 ............................ ATGTACATATGCTGTTTTAGCAATCATTGCTT 3950 28 100.0 32 ............................ TTATAGAAACTTTCCCATGCATCCTCATAATC 3890 28 100.0 32 ............................ TTAATGATACTACTCTCACCAATGCTGATTAC 3830 28 100.0 32 ............................ TAAAGGCGGTCATAGTGACCGCCCCATATCGT 3770 28 100.0 32 ............................ TCAACCTTTCTTTCTCTGGAGCAAATCGGTCA 3710 28 100.0 32 ............................ AGCAGAATGTCTTGAGGCAGCCCGCGAAAATC 3650 28 100.0 32 ............................ TCTATAACAGCAGGTGAATAGCCCTGCCCCTT 3590 28 100.0 32 ............................ AAGAAGAAAAAGGGGTTAAACCTGCCTACCCA 3530 28 100.0 32 ............................ TTCACATCTTTTCTTCTGCAACCATGGTAAAG 3470 28 100.0 32 ............................ TTCAAAAACGGCGTTTCTGCAATGATCGATGG 3410 28 100.0 32 ............................ AAGGATAATCAGCACAACATCCGGTTTTAGAT 3350 28 100.0 32 ............................ TATTGCGCCATCTGGGGCATGTTCTTTAATAA 3290 28 100.0 32 ............................ AGAAACTCGTAGCCTTACCAGAAACCTTATCT 3230 28 100.0 32 ............................ ATCCCAGTTGTAAGGAGGATGATCATGGATTT 3170 28 100.0 32 ............................ CAAAGCCCAGTTTGATTACGTCAAGGTCGAGC 3110 28 100.0 32 ............................ GGTAGTCATTTGTTCCAAGAAAAATGATTACA 3050 28 100.0 32 ............................ CCAGCCCGAACAAATGGCACAGCCGTTATTCC 2990 28 100.0 32 ............................ ATCAATCATTGCGGAAATCCCGTCTTTATAGG 2930 28 100.0 32 ............................ AAATACTGAGTTGATTCCTTCGCTTATGACAT 2870 28 100.0 33 ............................ TTAAAGCTGAAAAAGCATTATCAGATAATGCAC 2809 28 100.0 32 ............................ TTTATCCGGTTATCGCGATGCAGTTTATGAGC 2749 28 100.0 32 ............................ TGATCCCTCAATGTCAGTCTCACGATAGCTAA 2689 28 100.0 32 ............................ ACTAACGGCTGAACTGGTGGTCGACTAAGCAC 2629 28 100.0 32 ............................ ACTGTTGAACTGATTAGTGCATAACCGTCTGT 2569 28 100.0 32 ............................ TACGGGGGGAGTGTGGCGGGCGCAGTTTCGGC 2509 28 100.0 32 ............................ ACAAAGCTTGATGACATGGGAGCAACTGCAGC 2449 28 100.0 32 ............................ ACATGCGGTCCTCTGGTAAATCAATACCTGTG 2389 28 100.0 32 ............................ TTCATTGAGGTTATAAATATAACGAACTGTTT 2329 28 100.0 32 ............................ AATACCACTATTCGATGAAAACGCCTAGCCAA 2269 28 100.0 32 ............................ CAAGCCAACCTTTCTCTAAAGATGTTTGGTTC 2209 28 100.0 32 ............................ ATCTGGACCGCTACCATGTGCGAAACTTGAAA 2149 28 100.0 32 ............................ TATCGGGCGCTTGTTCTTTTGAGGTGTCTCAT 2089 28 100.0 32 ............................ ATGAGAGAGCGAATTTTTGCATTAGTCGATGT 2029 28 100.0 32 ............................ AATATGCGACAGATCTAAAAACGCTTGAGGAA 1969 28 92.9 32 ...AC....................... AGCAAAGTTTCAGGACAAAGTTATAGCGCAAT 1909 28 92.9 32 ...AC....................... TAGCTGTAACTAGGGGCACACATTCATAGGAG 1849 28 92.9 32 ...AC....................... ACGATCATCATTCAGAGAATTTCTTAAACCTG 1789 28 92.9 32 ...AC....................... AAAGCAGAAACAGCAGAACCCAGAATCTTTGT 1729 28 92.9 32 ...AC....................... TTTAGTTAGCCCAACAAGAAATTGATCAAGAA 1669 28 89.3 32 ....T.......AT.............. TTTCTTTAATAGGTCTCTTTCATTGCCAATGA 1609 28 89.3 32 ....T.......AT.............. TTGTATTGTTGCTGACTTAAACCAATTCTTAC 1549 28 89.3 33 ....T.......AT.............. CTTGAGAAATTCCATTCTCTTTGGGTACAGGTA 1488 28 89.3 32 ....T.......AT.............. ACAATATAGATATGCTCAGCGTTTTGAACCGA 1428 28 89.3 32 ....T.......AT.............. TTTGTAACCACCAGTTAAAGTATTGACTAAAT 1368 28 89.3 33 ....T.......AT.............. TTTGACAAAAAAAGTGTTTGGATGCTTTCGCCA 1307 28 89.3 32 ....T.......AT.............. ATTGAGAATCCAGTAGGCCGAATAGAAAAGCT 1247 28 89.3 32 ....T.......AT.............. TGTTTTGCTAATTTATCAATATCGATTTTCAC 1187 28 85.7 32 ...AC.......AT.............. ACAGGGGTCAAGTTCAGAAGATTTACGTTACA 1127 28 92.9 32 ...GC....................... GTCATAGTCCTTCTGAACACCAAATGTATAAG 1067 28 92.9 32 ...TC....................... GGTATTAGTGCGAATTGGCTTTTAGCCCACGC 1007 28 89.3 32 ....C.......GT.............. TTAAATGCTCAACTATTTCTGTAGCTAATGGA 947 28 85.7 32 ...GC....T..A............... TTCAAATGATTTAATGAGCTTGTAGCCATTTT 887 28 85.7 32 ...GC.......TT.............. ACGTCTTCTAATGATGGACTTTAATCCAATAT 827 28 85.7 32 A..GA.......T............... ATCTCACTGAAGATATGACCATCACTTTCTTC 767 28 89.3 32 ..CGC....................... AAGCCATTTACTTTGATAAAGCGACACATAGC 707 28 89.3 32 ....T.......AT.............. AGCTTCAACACGTGTGCTATTAGGCGGCAAAG 647 28 89.3 32 ....T.......AT.............. ATGAGCAAATTATCAATTGATCTATCTGCAAG 587 28 96.4 32 ....T....................... TAGACGGTGTTACCTGTAGGCGGTGTCTACTG 527 28 89.3 32 ...TC........T.............. ATCGTTTGAATAATATGGACAATCCAGCCAAT 467 28 96.4 32 ............T............... GCAGCATCAAACGAGATATTGGCTAACATATT 407 28 85.7 32 ...GT.....A..............C.. CAAATAGTTTTAGCTATCTGAGCATTTAATTT 347 28 96.4 32 .............T.............. TTCATCACGTAGCCTTTTACACGCATCTTGCG 287 28 85.7 51 ....T.......AT......C....... TGTACGCTGAGTATTGATATTGACATTCAGGGCATTCAGAATTTGGCGCTC 208 28 100.0 32 ............................ TATATATACTATTTTCTCCGTCATTTTCTTTT 148 28 89.3 32 ...TC...................A... TGATAGTTCGGAGCATGTAAATCTCCAAAATG 88 28 85.7 31 A..TA.......A............... CCAGTTTGCTGAAAATCACCAATACGGTCTT G [63] 28 28 89.3 0 ...TC......T................ | ========== ====== ====== ====== ============================ =================================================== ================== 69 28 95.3 32 GTTCGTCATCGCCCAGATGATTTAGAAA # Left flank : GACGTTGGGCTAAAACGTTATACAAACAACTTGCTAAAGGCTTTGGAGTTGAGTTTATTCGGGATGAAGGAAAAAATTCTCACGACACTATTGCTGATATAGCCAACAGCTACCTCGATCATGGAAACTATATTGCCTATGGCTATGCAGCAGTTGCTTTAAATGGAATGGGAATTAGCTTTGCCCTCCCTATTTTGCACGGTAAAACACGTCGTGGAGGTCTAGTTTTGACCTAGCTGATCTAGTTAAAGATGCTTTTGTAATGCCACTCGCTTTTACATGTGCAGCAAGAGGATTAAATCAAAAAGAATTCCGAATGCAGCTTATTGAAACATGCCAAGACCAAGATATTTTAGATTACATGTTTAGCTTCATTACTGACATATGTAGTAAAATCAAATAAAATCATACATTTAACCCAAGTACCTCATAACGAAGTATTTTCACTCATTAAAAACTTATATAATTGATTTTAAGAGTTTTGTTTTAACTTAACTCTA # Right flank : A # Questionable array : NO Score: 5.88 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.84, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGTCATCGCCCAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTCGTCATCGCCCAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [40-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 9683-10489 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADVLL010000010.1 Acinetobacter baumannii strain ACIN00234 ACIN00234_c0010, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 9683 28 92.9 32 ...C........T............... ATAATCTTATAGGTGTCACGGCCATTAGGTTT A,A [9685,9689] 9745 28 85.7 32 ....C.....AT.C.............. TAGCCCTTCGGCTTGATGATTATTGAGTCTTT 9805 28 92.9 32 ...A...............G........ TATCGTGTATTTGATTCTAAAAAGAAAGTGAA 9865 28 89.3 32 ...A........CC.............. AAACTCACGAATAAACTGTTCTGGTTTCATTG 9925 28 96.4 32 ...A........................ CCCAAACTTCCCGACCATTCTCGATATAAGCA 9985 28 100.0 32 ............................ TGCGCCAGTCGGTGCCGTACCTAAATTTACTG 10045 28 100.0 30 ............................ TTTAAGCAAAAAAAGCCCCTTAAAAGGAGC 10103 28 100.0 32 ............................ CAGATCGTTGACGAGCTAGGCGCGACACCAGA 10163 28 100.0 32 ............................ TTCAATTGTGAAGTCTTTGCCCAGTAATGAAG 10223 28 96.4 32 ...A........................ ATTCGATAGACTGATTCTATAAGCTTATTTGC 10283 28 100.0 32 ............................ TTTCACCGAATGGCGATGGATTCAAGCCACAG 10343 28 92.9 31 ........C..T................ ACATTCAAAGAGGCTCATCGAATCCAATCGA 10402 28 82.1 32 A..T........TC..T........... TTATCTTGAACCAGTGAAGCCGCGTTTTTACT A [10406] 10463 27 82.1 0 ...TC.......T.........C.-... | ========== ====== ====== ====== ============================ ================================ ================== 14 28 93.6 32 GTTGTTCATCGCATAGATGATTTAGAAA # Left flank : TCTTGCTGCTAAAACTGCGCTAAAGCAATTCAAATGCTCACCTAAATCTACTCTGTTTTGAGGATATGGCATGAATGAGCAACCTGTTGTTAGGTTGTGAACTTCATAATCGCCATTTGCTTGAACATTTTGATTGATAATGAATTTAGACATAGATTTTACTCCTCACAAATCATAATGATTGAAAGTAGACCTACGCTTTGCTGTATAGCAGTATGAGACAAAAGTTTAAAATGTTGTGCTATCATTTGGATAGTCCTTCTTTAAGTTATAGAGCTTTGGAAACGGACAAAAGCAGATATGAAGTTTTCGACGGCTAAGTATCTGCTTTTTTATGTTCGTTTAGTATTCAAAATATATAGTTTTAATATGTAAGTCAAATAAAATATATATATAACTATTAAGGGATATACTTTACTGATTTCAATTAAGAGTTATACTAAATGCTTAATCCATCAACTGAGATGGTTGAGAAATTAATAGTTATTATTAATTTTTAT # Right flank : ATTTAAGACGACGTATTTTGTCGTTAAAAGGTTGTATTAAGCTGATAAAAACTTTCTCTTTTTAAAACAAAAGATTATATTTTTATGATATTTAAACTTTAACAATAAATTATGCATGTCATTCTCATCTCGGCTTGTGAAAAAAGAGCTTTAAAGAAAACTCGAGCGATTTTGGATAGCTATGCTATTCGTACAGGATATTCGTCTTGGCAAGCACCAATGACAATGGACGGCTTAAAAGAAATTCGTAGTGCATTAAAAAAAGTAGCCACCCGACAAACTGCGGTGGCCGCTTACATTAATTTTGGTGTGCGAAGAATGAAGCTTGCATGGGTTGTAGGAGCAAGACATAAATTTGCCCATGACGGTGCATATCCAGTTGCATCGACCAAGAAACAGCAAAAGTTATTGATGCTAGATGAATGGGTCAAAGCAAGTAGCTTGTTGGCGGGTGCAGCAGGGGACATGCATGATATTGGTAAGGCATCCCAACATTTTCA # Questionable array : NO Score: 5.50 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTTCATCGCATAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: F [matched GTTGTTCATCGCATAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [14-14] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [78.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //