Array 1 1665577-1665963 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP076258.1 Providencia rettgeri strain W986 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1665577 28 100.0 32 ............................ ATGCAAATAATCGGATATGTATTACTCATGCT 1665637 28 100.0 32 ............................ AGTATTGCTGAATGAAGATGGCACGCTGCATA 1665697 28 100.0 32 ............................ AGACCAAACGACTCAACAGCTACGCACCACAA 1665757 28 100.0 32 ............................ ATAAATAACTTGGCTCCGAGTGTTAAGTTTAG 1665817 28 96.4 32 ............G............... TCATGCTGATGAATGGGATCAGGATGTTCTCT 1665877 28 92.9 32 ..........G..T.............. TCTTCATTGCATCCCTGCGAGTTAAATTAATC 1665937 27 89.3 0 ..........G..........-..A... | ========== ====== ====== ====== ============================ ================================ ================== 7 28 96.9 32 GTTCACTGCCATACAGGCAGCTTAGAAA # Left flank : GACCAAATTTCTAATATTGAAGCGAAACAAGGCTTACAACTGCAAGAAATTGATAAATTAGATTTCTTGGCAGATACCCGTTCGATTCAAAATGCAGCTCGTAAAAGTGAGCTGCTTGAGACCAACTGGACGGGTACTACGACGGATTACTATAAAGAAAAGGCGATGTTTGATGCATCCCAAAGTATTTTTAAAGATTTAAACAGTATGTCACTTTTTGGTAACCGTTAATAAATTAAAGGTTTAATTTTACTCACCGCGCTTTGGAGTGATTCGAGCGCGGTTTTTTTTATTTTGAGGTACCTTTATTTACGCACTATTTTTGTTTGTGCATATTGCATAAATCCCGATTTGTTTTACCCTAGTTTGACCTTTATTTTTTGCTATTTAAAAAATTAATTATTAAACAATAAGTTAGGATACCCTCCCAAAACAAAGGTATTTTGGCGTTTATAAAGCTAGTACATTGTTTTCCTTTGTTTTATCTTATTTAACTAATA # Right flank : AACAGCCAAGGAGTTATTTTTACTGGATATTCTGTGAAACCCCTCGCAAATTTGGCTTTAGTGATAATTTAAGGCTTGTTTCATTGGTTAAAGCTTATTCTAATAAGATTGATTCAAAAAACTTATTATTTAAGGAAGAATTCAACTGCTTATGGATGACTTTTCACCTAGTGACTTAAAAACCATCTTACATTCCAAGCGCGCTAACATGTATTACTTAGAGCATTGTCGAGTGATGCAAAAAGATGGTCGAGTGTTGTATTTCACAGAGGCAAAAAATGAAAACCTCTATTTCAATATCCCTATTGCAAATACAACAGTTTTGTTACTTGGTACAGGAACATCAATTACCCAAGCCGCAATGAGAATGTTATCTCAAGCGGGGGTGCTAGTTGGGTTTTGTGGGGGTGGTGGTACACCTCTGTATATGTCTACAGAAGTAGAATGGATGACACCACAAGGCGAATATCGGCCAACGGAATATTTACAAAGCTGGTTAT # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCATACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: F [matched GTTCACTGCCATACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.20,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 1674602-1675891 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP076258.1 Providencia rettgeri strain W986 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1674602 28 100.0 32 ............................ TAGCTTACTTAGAAAACTACCATCACCTGAGA 1674662 28 100.0 32 ............................ ACATAGATAGCGTCAGGCGTTGACCAATCGTA 1674722 28 100.0 32 ............................ AACATTAGTGGCTTACAACAAATCGTTAAATG 1674782 28 100.0 32 ............................ TTGTTCTTCCAATTGTGTCGGGTCAGTCGGTT 1674842 28 100.0 32 ............................ CTATTGGTAAAAAACTAAAGGAAATCATTGAT 1674902 28 100.0 32 ............................ AGCAATAAACGATAGATCTGAAGCGGTGAAAA 1674962 28 100.0 32 ............................ GCCTTGGTACATAAACCTAGGAGCCCTATAGG 1675022 28 100.0 32 ............................ ATTCATCATGAAGTGACTTGCGAAAGTATGCC 1675082 28 100.0 32 ............................ GGTATGTATGCCTGGTTAACTGCTAAAGCAAA 1675142 28 100.0 32 ............................ AACACATATAGTAATGCCAGTCTAATTAAATT 1675202 28 100.0 32 ............................ AATATCTTTTAATGTTGGCGGTAAAATCCAGA 1675262 28 100.0 33 ............................ AAGCGACTTTGGGTAACTGCGGATACTTATGAT 1675323 28 100.0 32 ............................ GTCATGAAAATGCTGAGGTAATACATGTCAAA 1675383 28 100.0 32 ............................ TGGTAATCGCTGAGGAGGAACAACCCCTTCGG 1675443 28 100.0 32 ............................ GCACACTCTAAAGAGATAAAAACAATAAAGCC 1675503 28 100.0 32 ............................ TTAACCCAATTAGTTCCCTGCATTAGATAGCC 1675563 28 100.0 32 ............................ TATCGCTTCATCCTTGTGATAGTCTTCATTAC 1675623 28 100.0 32 ............................ GATGTTTAGCCACTCAGTTACCGTCTTGAGGT 1675683 28 100.0 32 ............................ TGCTCCCTCTCATATTCAAGTAGGCAAATATA 1675743 28 100.0 32 ............................ CGTAGGTAGGTGATCTCGATGCTCTAAATAAT 1675803 28 100.0 32 ............................ ACGCTAAGATAGTGTCAGCGACAAAGGCCGGA 1675863 28 96.4 0 ....................T....... | G [1675889] ========== ====== ====== ====== ============================ ================================= ================== 22 28 99.8 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : TATTAAATCTATTCAAACCGTGCCAGAGCAAAGTGTTCCTGTCAGTTATATTCGACGACATGTAAAAGGCCAAAACCGGATAGAGGCCGATATGCAGCAAAAGGCACGTTTATGGTCTGAAAAATCAGGTCAGTCAGTGGCGCAGTGCTTGGAAGTGTTATCTAAAAGTCGGCCGAAAGCCAATAATCGTTTACCGTTTATTTGGGTTACAAGTTTACATGCAAAGAATGAGAAAACAGGAAGCCGGCCTTTTCCACTCTTTATTGAAAAAGTGATAGCAACACAAATGCAAGCTGGGATGTTTAATTGCTATGGTTTAAGCCAGCTTTCAAATGACCAAACGTTGGTTGCAACGGTTCCTCATTTTTAACCATTATTTTTTGTTCTTTAAAAAATAACTTTTAAATCAGTATGTTATAATTATTCATAAATTAAAGGGTATTTTATAATAAATACCCTTAACTAATTGTTATAGCATGATTATTATATTAAATTGCATA # Right flank : AGAATATTAAAGAATAGATATCTAGATTCTCTAATTGGTGAAAAAAATAAATGTGAGTTAAAGCTAGTTTTTTGTGAAATAAGTAGTTATACCATCTTTATCTTAAGTTAAATTTAATATCAAATATAATACGTATCTATCATTCGATAGCTTAGAAATGAAATATAGAACGGGTATTATATTACTGCCACAAAGGCAGATTTTGATTAGAGATAAATACCTGAAAAATAGATCGGGTAACCAGATAATAATAGGGATAACTAGGAGGGGTTATGAGCTTTGAGTTTGAAATAAATTGTTATTGGTTTTCAATCATCATTCGATTTTATAAATGATTTTATAAACCTGCATTTAATTAAAAAAATACAAACATCACGACTCAAATAAACAAATTAAACATCAATGACAATTGCTCAAAAGCTTGGTGGATAAGGCGTTCAGTATATCGGGGAAGGATGGAGATAATTACCCCTAGCATACTGATACCTATAGTTAAGGTG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [83.3-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //