Array 1 203-676 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYKV01000430.1 Salmonella enterica strain BCW_5097 NODE_430_length_808_cov_3.40134, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================================== ================== 203 29 100.0 32 ............................. ACGACGTCCGCCCGGAGGCGCTGCGACGTTTT 264 29 100.0 51 ............................. TGCCAGCGGGGATAAACCGTGCCCTTTCCGCCGACTCACCGACGCGCCCGG 344 29 100.0 32 ............................. GAGTTTATTTCCCATCCCTAACAGCCGGTTAA 405 29 100.0 32 ............................. GCTTACGAAGTTCTTTACCTGTACTTGGCGCA 466 29 100.0 32 ............................. ACGTGGCGCGGGATCATACCGTGGGATAAAAC 527 29 100.0 32 ............................. CTGCTGGGTGTCGTCAGTTATTTTATCCAGCA 588 29 100.0 32 ............................. CGTTAAACGTTCCGTAAGCGCAAAGGCTAGTA 649 28 93.1 0 .......................-.G... | ========== ====== ====== ====== ============================= =================================================== ================== 8 29 99.1 35 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : ATTGCCTGATGCATTACTAATTTTACGGACGGCCTGCCGATGCCGTCTGTGAGTCATCCATTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGATGATAAAAAGTGCTTTATAAAGAACGATATACGTTTAGTG # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGGTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 306-1370 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYKV01000381.1 Salmonella enterica strain BCW_5097 NODE_381_length_1502_cov_3.68728, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 306 29 100.0 32 ............................. GCTATGTAGCTAACCTATTGATTTTATAAGAA 367 29 100.0 32 ............................. TGGCGCAGCAACCAGATCCCGCTAACGAACCC 428 29 100.0 32 ............................. CGTTGCTGGCTATTCGAACTAACCTGATTGTT 489 29 100.0 32 ............................. GCCTCAGCATTGTCATAACCCCACGCCTGGCA 550 29 100.0 32 ............................. CGGCTCGACCGGGAGCTTGCCGGCATCGTGGA 611 29 100.0 32 ............................. GCAACTTCTTATATGTAAAAAACCGTTATGAT 672 29 100.0 32 ............................. TCCGGGGAAAGAACTCGCCTCGTCCAGCGTCA 733 29 100.0 32 ............................. CGGCGGCGGACGCCGCTCAGATAGCCAAAACC 794 29 96.6 32 ..G.......................... TATACAGGATTCTCACACTTTGGTTTGGTCGA 855 29 96.6 32 ..G.......................... CGTTTTTTTTATTTGTACTATTGTCAGTACCC 916 29 96.6 32 ..G.......................... CGGAAACAAACAAAGTTTTGCGCGATTCCACC 977 29 96.6 32 ..G.......................... CACCAGGTAACAATATCGTCCCCGACCTTTAT 1038 29 96.6 32 ..G.......................... GCGAAATTCCCCAGATACCGCGCATCGGCACT 1099 29 93.1 32 ..G.........T................ CAAAATTAATGTCCAGGACCTTATTAAGTTAC 1160 29 93.1 32 ..G.........T................ CTCGGGGATTTTGTGCCACCCAAAACGCTCGC 1221 29 93.1 32 ..G.........T................ GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 1282 29 93.1 32 ..G..........T............... CCGGATGAAAACGCCTACCCGGAAGACTACGA 1343 28 86.2 0 ..G.........T..........-.G... | ========== ====== ====== ====== ============================= ================================ ================== 18 29 96.8 32 GTATTCCCCGCGCCAGCGGGGATAAACCG # Left flank : ATTGCCTGATGCATTACTAATTTTACGGACGGCCTGCCGATGCCGTCTGTGAGTCATCCATTACCTCGCCTTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCGGACAAAAAGTAGTTTATAAACAATGACATACGTTTAGTG # Right flank : TTGCATAATTATAGTCTGTGTACCAGTAATGGCTGGTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATC # Questionable array : NO Score: 5.79 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 7703-8647 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYKV01000176.1 Salmonella enterica strain BCW_5097 NODE_176_length_8721_cov_5.10926, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 7703 29 100.0 32 ............................. AAACATCCGATCAAATACTGCGTTCGTTTGAG 7764 29 100.0 32 ............................. CGTATTTTTGAACTGGCCAGCGCCACCGATGC 7825 29 100.0 32 ............................. GGTTACGCGGGCGTCTGTTAAAGAGTCCTCGT 7886 29 100.0 32 ............................. GCCGGGGTTTCCCAGAGGCATTCTGATGAAAG 7947 29 100.0 32 ............................. CGAATGCAGATGCCTCCCGTACTGCCGCCGGA 8008 29 100.0 32 ............................. GATTGGCCCTTAGATAACGGGAGATCAAGCGC 8069 29 100.0 32 ............................. CATAACCTTCGCTACCACACTTGCCGGTACTT 8130 29 100.0 32 ............................. CCTTGAGGTTAGGGGAGTCAGGAAATTGCATT 8191 29 100.0 32 ............................. ACAAAATCGGCGGCCCAATCGCCGGCGCTGAC 8252 29 100.0 32 ............................. GCCTGCCGTCTTTTTATTGAGGTCTGTAAACC 8313 29 96.6 32 ............................T TAATCATTTTGTTTAAATCCCGGATCACCTCC 8374 29 100.0 32 ............................. GAGTTATTGTCACTCGTCAGTGATAATTTTCT 8435 29 100.0 32 ............................. CCCGTTGAAGATCTGGACGCATGGGGCAAAGC 8496 29 100.0 32 ............................. GTGAGCTCGGTTTTAATTTCGTCGCTAAGGTG 8557 29 100.0 32 ............................. CAAAAGGCCGACAGTGTGTACACCTCTAAAAA 8618 29 96.6 0 ............T................ | A [8645] ========== ====== ====== ====== ============================= ================================ ================== 16 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGAAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGAAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAATTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGTTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //