Array 1 218324-216550 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABG01000002.1 Salmonella enterica subsp. enterica serovar Infantis str. CVM N41903 N41903_R1_contig_10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 218323 29 100.0 32 ............................. GCGGAATACCACTATATAAAGCCCCTCAACCC 218262 29 100.0 32 ............................. ATTTTTACAAAAACTGGCCCCCTGAATTCATC 218201 29 100.0 32 ............................. TTGATTTTAATGGCGGGCGAATTGTATTTAAC 218140 29 100.0 33 ............................. TTTCCTGTAACATTCCGATATATAATTCTCCGC 218078 29 100.0 32 ............................. GCCCAATTGCCGGCGACGGTTTCCATGTCAGC 218017 29 100.0 32 ............................. TGGCGAAACAGGCCAGAGAACGCGAATTGCAG 217956 29 100.0 32 ............................. CGTGTTCGATGTAGGTTTCTTCCTGAAGGCGA 217895 29 100.0 32 ............................. CTACCAGGCCCGTTTGTCTCAACCATGACCAA 217834 29 100.0 32 ............................. TTGGCATGGCTGGCGACGTAGCGAACAAAATC 217773 29 100.0 32 ............................. CATAAATTACTCGATGCGTACCTGTGAAATCT 217712 29 100.0 30 ............................. ATACAGTAGCAAAATAAAAAGGCCGCCTGC 217653 29 100.0 32 ............................. GTGATCCGCGCCTATGACGCAATGGTAACGAC 217592 29 96.6 32 ............................T GTAGCGCAGGGACTGGCAACGGTGCCGGGCGT 217531 29 100.0 32 ............................. CAGGAGACGGCCAGCCGCACCGGTGGCGGTGC 217470 29 100.0 32 ............................. GGCGTTTTATTCGACCTGAAAAAATGGATCGT 217409 29 96.6 32 .............T............... ACATCTCGCGGACAATAGCGATTTCCACCGTC 217348 29 96.6 32 .............T............... CGTTTCGTTCATTTATTTAGTTTCCTGTTTCG 217287 29 93.1 29 .............T..............C CTTGTTAAATACAGGCGGCGGCGGGGTTG 217229 29 96.6 32 .............T............... AACGGCGACGGGATCGTTTTTTGTGGCGAAAA 217168 29 96.6 32 .............T............... CAGGATTGGATTAATGAAGACGGGTACGAAAT 217107 29 96.6 32 .............T............... AGATTGCAGAATTATATTTCACGCTGGCAGCA 217046 29 96.6 32 .............T............... CTGTTGTTATGCGTTGGATCGTAATAGTTAAC 216985 29 96.6 32 .............T............... CTTGGCAGGGCTGCGCCGCAATGGCAGCAACA 216924 29 96.6 32 .............T............... GTCTTATAAATTGGGCTGATAGTGCCGCTGAT 216863 29 100.0 32 ............................. TACCTGCCGGGACTGGAGTGCAGGTAACCCCA 216802 29 100.0 11 ............................. CGGCCAGCCAT Deletion [216763] 216762 29 72.4 32 T.AAA.AG...TG................ ACAGGGTATATGAGCTTATACGTCATGAACCA 216701 29 100.0 32 ............................. TCGTTGGTGGCGTTCGTCACCTGGCTGTCGGT 216640 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 216579 29 93.1 0 A...........T................ | A [216552] ========== ====== ====== ====== ============================= ================================= ================== 30 29 97.6 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACATCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGTAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 236100-234606 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABG01000002.1 Salmonella enterica subsp. enterica serovar Infantis str. CVM N41903 N41903_R1_contig_10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 236099 29 100.0 33 ............................. TCGTACACCAGCGCTTTACCGGAGTGTCCGTGC 236037 29 100.0 32 ............................. ATCAAATATCAGATAACCCCCGTCGGCAAACC 235976 29 100.0 32 ............................. ATCACATTCCTGAAAAATGACTCCCTTAGCGA 235915 29 100.0 32 ............................. GAAGATATTGAAAGCGCCCAATCTTCCCAGCT 235854 29 100.0 32 ............................. TCCAGCATTGACGCGAACCCTGCGCCGCTGGC 235793 29 100.0 32 ............................. GCTGAAATATTGCTATTTCCGAAGGGGCTGAT 235732 29 100.0 32 ............................. TCCCGCCTGAACAAAATCGACCACGTTATTAA 235671 29 100.0 32 ............................. GCTCCCGCGGGCGCTCCTGTTGGCCAGCATCA 235610 29 100.0 32 ............................. GCGTGGATTGATTCTGATCGCCGTGGGCGGGC 235549 29 100.0 32 ............................. GAAACAGAGATCGCGTCCGATAATGCCGACAT 235488 29 100.0 32 ............................. AGAATATTCAACTCCAGCGGGAAAAAGACGCA 235427 29 100.0 32 ............................. AACTTTCATCAAACTGGATCGAAGGGCCACTT 235366 29 100.0 32 ............................. CCGGTTTTAGCTCGCTGGAAACCTCGCTTTTG 235305 29 100.0 32 ............................. ACGCCGAGGGTGAATATTTAGACCGGGACGCA 235244 29 100.0 32 ............................. GGATCATCAATGTGGGAAGTTATCACAACGGA 235183 29 100.0 33 ............................. CGAAATTCAGCGTCTGGAATGCAAGGATTTTGT 235121 29 100.0 32 ............................. GCTATATCCCCGAATCGTGCGCTACGTGAAAA 235060 29 100.0 32 ............................. ACGAGGTCATTTTCAGCACTCGTCAGGCGCTG 234999 29 100.0 32 ............................. ATGCCCTGTTCGGCAAAATCCCGCCACGCTGG 234938 29 100.0 32 ............................. TAAAACCGGTGCTGGATTTTGATGAAGACGAA 234877 29 100.0 32 ............................. CCATTCAACATCGCACTTAAGAACTTGTGCCA 234816 29 100.0 32 ............................. CGATATTTATCCAGACTGTCGGACAGGGTGGT 234755 29 100.0 32 ............................. CCTCATCGGGAGCCAACGCCGCGAGAATACGC 234694 29 96.6 32 ............................C AGCACAATCATTATTAGATGAACTTTCATCAA 234633 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAACAGTTTATAAACAACAATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGACCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGTCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATATGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGATATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //