Array 1 3866604-3866209 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP047147.1 Streptomyces sp. GF20 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3866603 28 96.4 33 ....C....................... GTAGCGGACCGGATTTGCGGGAGGGGGTTCAAG 3866542 28 100.0 33 ............................ GCAGAATTCTTTGGCGCAGGCCGAGAATGCCAG 3866481 28 100.0 33 ............................ GGCGATGCACGCGACCCGTACCCGCGACATCGT 3866420 28 100.0 33 ............................ GGTGTACTTCGGCAGAGGGTCCGCTCCGAACGC 3866359 28 96.4 33 .......................A.... TGGAGGACGTTCCTCGGCGAGGACTTCTGGACC 3866298 28 92.9 33 .....................A..G... GGTACGCGGGCTGGTGTGCGACCAGTACGTCAG 3866237 28 75.0 0 ....CT......T.C....C....CC.. | A [3866213] ========== ====== ====== ====== ============================ ================================= ================== 7 28 94.4 33 GTGGTCCCCGCGAGGGCGGGGGTGTTCC # Left flank : CGACGCCGACATCACCCGAGCCGTCGAAGCCGGCGCCACGGGCTACCTCCTGAAAGCCGAACGCCCCGAAGAACTCTTCACCGCCATCAGGGCTGCGGCCTCGGGGCGTACGGCGTTGTCCCCGCCTGTGGCGCAGAGGGTGATGACTCACTTGCGGAACCCGCAGCCGGAGTTGACGCCTAGGGAGCGGGATATTTTGCGGCACTTGACGCAGGGGCTGGGGAACCGGGAGATCGCCCGGGCGTTGTTTATCAGCGAGGCGACGGTGAAGACCCATTTGGGGCGGATTTATCAGAAGTTGGGGGTGGAGACTCGGGCGGGGGCGGTGGCTGTGGGGAAGGAGCGGCGGTTGTTGGGGTGAGGGGTGGGTGGCGGGGGGCTGGGTTCGCGCGTTGGCGGGCATGGCGGGAGGGGGGTGCGTAGGTTGGGGGCTTGAGAGGGGGAGAACGGTGGTGGGCAAAGGGATGGGAAAGGCTGCCTGAAGGTGCAGGTCGGGAAGG # Right flank : CGCCAGACCGGACAGCTGCCCCCCGCCTAACCCCCCAGCCGAACCGGCCGAAACCCATCCCGCCGAAGCGCAAGCACCCCCGAGCCCGCAAAGGCAGCACACCCACCCCAGCCCCGCCCTGCTCGCGCGCCAGCCCCACCAAGGACACCCCCCGCATCGCCAACCAAACCACCCCGCCAAAACACCCCCCGAGACCAAACAAAACACCCCCGCCAACAGCAGCCACGCCAACCACCCTCAACATCACGAACACACGATGGTCACAAAATCGCCACAGGCGGAGCATCCGGCACTCCCGTCATACCTCGCAGCCCCACACTGAGCGGACGCATCCGCATTCAGGGGGAATCATGAGACGCCAACTCGCCATCGCCGCAGCATCCTTCACCGCCGTACTCGGCCTCGCCGCCTGCGACACGGAGGTCACCTCCTCCCCCGACAAGCCCGCTGCCGCCGACGACGCGAAGCCCGGCAAGGAAGCCGACAAGGCCGAACAGGCT # Questionable array : NO Score: 5.83 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGAGGGCGGGGGTGTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGAGGGCGGGGGTGTTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-11.90,-13.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 4699175-4699326 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP047147.1 Streptomyces sp. GF20 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 4699175 30 100.0 31 .............................. GGCGGCACCGCCGATCGGACCGAGCCCAAAT 4699236 30 96.7 31 ..............T............... AGTGGAACGGCTGATCGCACCGAACCAACTC 4699297 30 96.7 0 ..........................A... | ========== ====== ====== ====== ============================== =============================== ================== 3 30 97.8 32 CAGCCCGGCCGGCGCTTGAGGCCATCGGTA # Left flank : CTCTCCCCGGCATCCAGCACGAACGCCGCCAGATACACCAGATGCCCGGCCCCACGCACCCCCGTGATCACGGACCCGCCGTACGAGTGCCCGACCACCACCGGAGCCACCCCGAACCCGTCCACCGCCTCCTGCACCACCCGCGTGTCCTCCCGCAACGACCCCCGATGCAACTCCGGAACCACCACCTCCACCCCCACCCGCCGCAACCCCGCAGCCACCACCCCGAAATGCCCCTCCTGGTGATAGAGCCCATGCACCAACACGACCCCACCCATACGTCCCCCTCCTGGTCCTAAGTTCAGGACCACTCGCCCCCTGGTCCCTGCGTTCAGGGCCACTCGCCCCTAGTTCTGCGTGCAGGGTCCGGCCCTGAGTTCAGGGTCCCCCCGTCCTGGCCCTGCTTCCACGGCCCGCCTGGCTGATCCTGCACTGACGGCCCGCCCCCACGGCCCCGCCCCTGCTCGGCGGCCACCTTCCGATCCAACGGACACCAATCC # Right flank : AAGCGGCACCCCCAGCACCAGAGGCCGCCGCCAGGCAGACGCACCCACACCTGAAGCCACACCCCACCTCCCCACCGGTAGGCTCTGATCAAGCGGGCCCGCAAGCCCACCTCACCGCCCCGAAGGGAACCCCCATGGCACTCGAAGCCGGCCTCCTGGAAATCCTCGCCTGCCCGGCGTGCCACGCCCCCCTCGAGGAGTCGAAGACCGACTCGACCCCGGAACTCCTGTGCACCGGCGAGGGCTGCGCCCTCGCTTACCCGATCCGCGACGGCATCCCCGTCCTCCTCGTCGACGAGGCCCGCCGACCCGCCTGACCAGGGCAGACAGGCGTACCCGCACGCGCGGCACGCGAACCCCGCCCGGGGCGGACCAGGCGTACCCGCACCCACGGACCGCGACCCCCCGCCTGACCAGGGCGAACCAGGCGTACCCCGCGGACGCGAGCCCCGTACGAGGCGCGACCGAGCCTCGCGGAGGTAGCCCGCCCCACCCCGGGG # Questionable array : NO Score: 2.56 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAGCCCGGCCGGCGCTTGAGGCCATCGGTA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.40,-6.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [25.0-28.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 3 6411155-6408497 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP047147.1 Streptomyces sp. GF20 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================================================================================== ================== 6411154 37 97.3 36 .G................................... GGCCGGCTGGCAACGGCCACCGTCGCGGACCCCGGC 6411081 37 100.0 36 ..................................... CACGATGGCGGTGACGTCCAGCGCGGGCCCAGGGTT 6411008 37 100.0 36 ..................................... CGTGGGACGAGCCGGCCGCCGCGTACCTGCGCACCG 6410935 37 100.0 36 ..................................... GCCGCCGCGCAGCTCGCGGCCGCCGACGAACCGGAC 6410862 37 100.0 37 ..................................... CAGGCCGCCGAGATCCTGGCGGGAAACAACCGACAGC 6410788 37 100.0 37 ..................................... GACAAGGTGGAGGCGGCCATCGCGGTCTCCCAGACGG 6410714 37 100.0 37 ..................................... GGTGACCCCGAGTGGGTCGCGCGGGCCTGGTCCACGA 6410640 37 100.0 37 ..................................... CCCCGGGTCAGCCCGGGGTACGCCGCGTAGGCGTTCG 6410566 37 100.0 37 ..................................... GGTGACCCCGAGTGGGTCGCGCGGGCCTGGTCCACGA 6410492 37 100.0 37 ..................................... CCCCGGGTCAGCCCGGGGTACGCCGCGTAGGCGTTCG 6410418 37 100.0 36 ..................................... GCCAGCCCGACTGCGGCGTCAGCCAGAGGTTTCCCT 6410345 37 97.3 38 ...........T......................... GCCGAAACCGTGCTCCACTCCGGGGGCATCACCGAGGG 6410270 37 100.0 36 ..................................... CCCTACGCCGCAGGCCGTGGACCCCTGCGGGCCGAG 6410197 37 100.0 36 ..................................... CCCCTGGTCCCGTCTGGCGGGTCGCGCGAAGCGCGG 6410124 37 97.3 38 ..........T.......................... CCCCAGGTCCCGCCGGGCTCGACGGTTGCCTACCTGCC 6410049 37 94.6 37 ......................A........G..... TACACCGACAAGGGCTCCTACGCGCACGCCGCGTAGA 6409975 37 97.3 37 ...................A................. AACGGCAACGCCGCCGCGACCGCTGCTGCCCTTGCGG 6409901 37 86.5 100 ............G..T.....AAT............. CAGCTCAGGGCGAGGACGGCGCCGCCCATGAGGTAGTGGCGGTCTGCCTTCGGGAAGATCGCGACTCTCCGCAGATCGCAGAAACTTGCGGGTGAGATGC 6409764 36 78.4 37 CGTA...G.........T.-.A............... ATGCCGGGCACCTGGGATTCGTGGGGTGTGGATGCAG A [6409756] 6409690 37 94.6 38 AC................................... GCGGCGGCGAGGTCGGTCTCGTAGGTCACGCGGCGCCC 6409615 37 100.0 36 ..................................... CTCGGGGGCGAGACCGACGACGACGCGGTGCGCCGC 6409542 37 94.6 36 .................C....A.............. GCCGTGATGGCCCCCCTCGTGCTGGCCTCGCTGGCG 6409469 37 97.3 36 ...................A................. CGCTTCACGCTGGGCGGTACTGCGTACGGCATGGTG 6409396 35 91.9 33 ...............--.C.................. CTGGATCGCTGGCCGACCCCCACGCCCTCCCGG 6409328 37 100.0 37 ..................................... CGCTCCGCCGTGCGCCAGACGGTACGAGCCGCCAGGG 6409254 37 100.0 36 ..................................... ATCCTCCACGTGCCGGTCCAGTTCGTCAGGCGCGAG 6409181 37 86.5 34 .................A..T.A............CT CCCCGGCCGCGTGGGCGGCCAGCTGGGCGACGGC 6409110 37 97.3 39 .............................G....... TGCGAGGCGAGCTGCGCGGCGAGGTCGCCGTGGCCCCGG 6409034 37 94.6 37 ..A..................C............... GCCGCCTTCCGGCAGCGGTCGGAGCAGTAAATCTTGG 6408960 37 97.3 36 .........A........................... ATGTAGTTGGCGCCGGCGAACGTCGCACCGGTCAGG 6408887 37 94.6 36 .........A....G...................... CACGTCGCCATGACGCGCGGCCGCGAGCGGAACACC 6408814 37 97.3 38 ...............A..................... AACACGGCGGCGATCCGGGGAACCTGGTCGGCGTGACG 6408739 37 94.6 36 ...............A.........C........... GTCGCCCAGGCCGATGACTCCGGGCACACGGTGAGC CCG [6408725] 6408663 37 89.2 36 ..........T...T........TA............ CACTCCGCCTCGGCGCACCAGCGCGCTGCCCAGACG 6408590 37 97.3 20 ......................A.............. ATCGCAGCCAGCGGCCGGCC Deletion [6408534] 6408533 37 67.6 0 C.CCTC.A..G.AG...T....A.............T | ========== ====== ====== ====== ===================================== ==================================================================================================== ================== 36 37 95.7 38 GTGGCGGTCGCCCTCCGGGGCGGCCGAGGATCGCAAC # Left flank : CGCCACCCGAGCCGCCAGCACCGTCCCCGCCTCCTTGTGCGGCACCCCCACCCGGCCACCCGACCCCTCAACCACCCCCAACCGCTCCTGCCAGGCACAACACCCCTTCCCCACGTCATGCACCAACCCCAGAAACTCCGCCACCTCCCCCGCCCCGAACACCTCACCGAACCCCCGCGCCAGAGCAGCCGAACCCCGCAGGTGATCCACCAACAGATGCCGCACACCCCACGGATTCCGGCTGTGCGCGAACAACTCACGACCCGACATCCCAGCCCCCTCACCGATCGACCACCCACCGAAGGCAGCCACCGTAAAGTGGACCACCGACACCACCAACCCAGACCACCCCGAAGCGACCAGCCAGGCCGCTTCGGAACCTGAAGCACACACACGACACGCCAATCACACCCAACGAAAATGTCAGATTCGCTCGCAATCGGGCCTTGCTTAACTGGTGGTCGAGAGCACTCAGACAGACAAACCCCTGGCCAACCAGG # Right flank : GCGACCAGCCCGGACTTGCCGCGGACCTTGGTGAACGCAGCGACGAGCGCCGACCTCGTCGTACTCGACAGCGCTCCGGAGAACCCGCCGCTCCAGCAGTTGGCGCTCTCCGCAGTGGCTTTGTTCACGACTTCGGGTTCTGGCTCACTTTCCGTGAACCATCACACAGAGTGACGTTTGTCCGGCGAGCGGGGCCTCGGCAAGCTGCCTGAAAACGATTCGTCCCCAGTGCGGCGTGGCTGACAGTTCTGCCCGTGGAAGAAGTAGTGCTCCAGCTGGAGGAGTTACTGTTCCCGTCGATCTCGGACGTGACTGTGCTGTCGGTCGACGTGACCGACGAAGCGGTACGCATCGAGGTGAGGCGACCCCGGTTGTGTGGACACGCTGACAATGGATCTTGCAGATCCGAGGAAGGGTGTCCTGGTGGGACGGAAGTCTCCGTATCCGGCAGAGTTCAGGAACGATGCCGTCGCGCTGTACCGCGCGGCGGGCGGGAAGCG # Questionable array : NO Score: 5.53 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:-0.15, 8:1, 9:0.61, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCGGTCGCCCTCCGGGGCGGCCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGCGGTCGCCCTCCGGGGTGGCCGAGGATCGCAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-11.70,-18.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [40-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 7259286-7258855 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP047147.1 Streptomyces sp. GF20 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ==================================================================================== ================== 7259285 27 78.6 31 .C.A.............-AAA....... GCAGTTCACGTTGGCGCCGTCGGCCAAACTG 7259225 28 75.0 80 ..G....G...GA.T...........TT CGGTGAGAGTGGTCTCGAGAGGCGCGATGCAAGTGAATGAGAACCCGCTGGCTTCGCGATAACGTTGCAGGTCAGCAAGT T [7259203] 7259116 28 100.0 33 ............................ CTGGTCGCTGTGTTTGAGCCGGGGAGCCAGCGT 7259055 28 100.0 84 ............................ CGCGACGACCTCTTCTCTGCGCGAGCGGAGGTACCCCGCTGATCGTCTGAAGTACGCGGATGAGGAGCTGTCCTCTCCGCGCGA 7258943 28 89.3 33 ...A.T....................T. GCCGGGGCAGTAGACGGGCTTCATGACGGGCTG 7258882 28 85.7 0 .......G......T.T....G...... | ========== ====== ====== ====== ============================ ==================================================================================== ================== 6 28 88.1 52 GTCGGCCCCGCACCCGCGGGGATGCTCC # Left flank : CGCCGACCAGGCCCTGAACTTCCTGCGCGAGGTCGACTCGATCAACACCCACCGCCACGAGCGCATGCTCGACCTCACCCGCGAACAGCTCAACGGCGTGATCAAGAACAAGCGGATCACCGTCTGGGGCGCCGCCTTCAAACCCGATACCGACGACATCCGCGACTCCCCCGCCCTCGCCGTCGCCCAAGCCCTCCACCAAGCCGGCGCCAGCGTCACCGTCTCCGACCCCAAAGCCCTCGACAACGCCCGCAAAATCCACCCCCAACTCGACTACGCCGAACACCCGATCAAGGCAGCCGAAGGCGCCGAACTACTGCTCCACCTCACCGAGTGGCCCGAGTTCACCCGCATCGACCCGACCGACCTTGCCCTCCGCGTCGCCGTCCCCCGCGTCATCGACGGCCGAGGCACCCTCAACCCCGCCCGCTGGCAGGCCGCCGGATGGACCCACCGCGCCCTCGGCCGCCCCTGAACACCTGGCCTTTCAAATCGAGTCG # Right flank : GGGGTGCGACGCCTGACCGGTGTTGCCTCACCGCGGGGCAGGTCGACGATGAAGCCGCGGCCGGCGGAGAGGTCGTCGGATTTCTGCTCGTGCGAGCTCAGGGCGTCGCGCAGCAGTCTGAAGTACTCCGCGGCGCCCTGCTCGTTGAGCTCGTATTCCACGCGGGGCGGGCCGCCTGCGGTGCTCGGCGCGATCTCGTGGGCGATGTGCAGCCCCTGCTTCGCCATCTGCTTGAGGGCGTGGTAGATCGAGCCCGGCTTGGCGCTCGACCAGTCGTGGGCCCCCAGTACTCAAGATCATTGCGCACCTGATGGCCGTGCGCCCGTCCGTGCTGGTGGCCCGCGCCGAGATTCAGCAGCCGGATCGGTGGCATGGGCATGCCCCTCTCCTCGTACGCAGTTGCGCCCGGATGAGTTCTATACACGTTTGACTAGTCCTAGATCTGCGGTACCTTCGTCGCGACTAATCAAGTTTGACCAAACGTCGATGACCCTACGGCG # Questionable array : NO Score: 3.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.43, 5:0, 6:0.25, 7:-2.26, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCACCCGCGGGGATGCTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGCCCCGCACCCGCGGGGATGCTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-12.10,-12.10] Score: 0/0.37 # Array degeneracy analysis prediction: F [2-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [26.7-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.5 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //