Array 1 239733-240688 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAELVF020000002.1 Streptomyces sp. P38-E01 scaffold2_size277852, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================= ================== 239733 29 100.0 40 ............................. ACGCGCTGTCGCCGCTGTGCGCACCGGCCGCTGCCCGGTG 239802 29 100.0 35 ............................. CTCGTCTGGTCACCGCGAGATCAGGGCCCCTGATC 239866 29 100.0 36 ............................. ATCTGCGAGACGGAGCCGACGTACATGAACGAGTGC 239931 29 100.0 35 ............................. ACGGGCGGACGCTGCTTGCTCGGCCCGCCTCGCCA 239995 29 100.0 37 ............................. TCGCTGGTGTCCGAGAGCGACGAGAGCGAGCCGCCAG 240061 29 100.0 34 ............................. ACTTCGGATGCGGCAACGGCCGGTTGACCGTCCC 240124 29 100.0 37 ............................. GCGAGCGCACGCCGCGCATCCTGGAGCCGTGCGAGGT 240190 29 100.0 39 ............................. CGCGGCGCCTCCGCCCGAGACGCACACACCCGGTACCGG 240258 29 100.0 38 ............................. GATGTACATGCGTCGTGATCTCTCTCTGTGGTGAGAGC 240325 29 96.6 41 ..........C.................. CCGCGGGGTGAGCGTGACGCTGGTGATCTCTTGGCCGGCCG 240395 29 100.0 36 ............................. CTTGGCGTTGCGGAAGCGCTCGTACACGGTGATGTT 240460 29 100.0 37 ............................. CCATATCCAGCTGCGCTCTGCCCACGGTATTTCCCCT 240526 29 100.0 38 ............................. GCGCCGGTGCGGGCGGCGTGGTCGGCGGCGGTGCGCGC 240593 29 100.0 37 ............................. GTGATCTTCGCGTCGGCGCTGTAGCAGAACTTCTGGT 240659 29 82.8 0 .....................T...TGGG | T [240683] ========== ====== ====== ====== ============================= ========================================= ================== 15 29 98.6 37 GTCGTCATCAGCCCTGGAGGGCTCGCAAC # Left flank : CGCCTGACCCGCCCACCGGGCCCACGCTCCCCAGTATTCCCTCAGGGACACAACAGCGGATCGATGAGCGGCGCCGAGGCGCATTGGCGTTCGAGCACAAGGAGACCGCCTGCATTGGGCCGTGCCCGAACACGATCGAATGCTCAAAGCAGGGCTCTCTCCAACGCGTTCGTTCCCCTCCGCTGCCATGGCATTACCAGCCGCACGGCAGAGAGTCGTTCCCCCCTGGCTGAGCCAGTCCCGAAGTTCCCGACGAAATCACGTTCGTCCAGCGAAGAGCAGTTCGGAGAGGTTTCCAAGTCCCCTGCTGCAGGTACGAAGCTGCCTGCGAGCTCACCCACTTCAAAACCAACTGATCGCCTCAAGCCAGTAAGCTTGCCCACACTCGCCCCTCACTCCTCAAGCCTGTGACCAGCACAGATGCATCACCGCCGGATCGCCGCAAACAAGGTCGACACAAACCCCGACTACACCCCTCCCGCCAGCTGTTTTACCCTCGG # Right flank : GTAGCGGCAACATCCGCTCCTGCGCCACGACATGAAGGCGCTCGCCCGGGTCATCCGGGCGTAGCCCGCTGCGGCCGGAGAGGGAAGGCCCACCAACCGACGCTCAATTCGTCTGCGGTGCACGGCCGTTGGCGTCGCTGCGCATCGCCGGCGATCGGCTGGCGCTCGGCGGTTTCGTGATTTGCGCGCGACGTAAGTGGTGCGGCTCGTATGCTGCCTGACTGGGGGTCAGGTGCCTCGCTTCGGGTCACTGGACGTTGGTGGCCGGGGCCGCGGAGGCCGAGGCGGGAGACAGAGCTGGTTGGGGGGGCCGTGCAGGTCTGCTTGGTGTCGTTCGAAGCGTGGAACATCACGCGGTTCATGTTCGTGACGGGCAAGCGGCGGGAGATCGCCGGCGCGTCGGAGCTGATCACGTATCTGGACCGTCGATGGGTGCGAGAAGCGCTGGAGGAGGTTTTCGGCGCGGAGTGCGGCGACGGGTGGCGGATCGAGGAACAGCC # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCATCAGCCCTGGAGGGCTCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.60,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [40.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0.37 Confidence: LOW] # Array family : NA // Array 2 251978-253989 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAELVF020000002.1 Streptomyces sp. P38-E01 scaffold2_size277852, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================= ================== 251978 29 100.0 37 ............................. AGGATGCTGGCGATGTTGTCCATCTCGTCGAGGGTGC 252044 29 100.0 36 ............................. GCGAACCGGGCGGCCCCGCCGCCGGCAGCGTCGACC 252109 29 100.0 38 ............................. TCGCTGTACCGGCTGGGGGACGCTCCCCGCTCGCCCAC 252176 29 100.0 35 ............................. TGGGTGGGTGACGTCAGGAGTTCTTCCGGGCGGCC 252240 29 100.0 38 ............................. GCATGTGGGGCGAGCGGTGGGTACTGCCCGCCGAATGC 252307 29 100.0 37 ............................. GTCAGCAGCAGGTAGACCCGCTGGTTGTCGCCGCCGC 252373 29 100.0 38 ............................. AGGGAGACGGTGAGCTTGTTGCCGCGTTCGGTGAACTC 252440 29 100.0 38 ............................. ACCTGCTGTCCGGGCCGGCCCAGCCGGCCCGCGACTGC 252507 29 100.0 38 ............................. CGATTCAGCCGCATTTTGTATCGACTCATCATTCACTC 252574 29 100.0 41 ............................. GCGCGTTGCTCGTCACCAGAGATCCTCATCCGGTGCCCGGC 252644 29 100.0 41 ............................. ACAGCACATGGCACCACGGCTGGGAGACGGCCGCCGCCCTC 252714 29 100.0 38 ............................. GCGAGTTCGCGGGCGCCTGCCGTCCTGCTGGTCTCTCC 252781 29 100.0 37 ............................. CCGCACGGCGAGGACCGGCCAAAGGGTTACCCCGGTC 252847 29 100.0 35 ............................. CGGTGAGCCGCCGCAGGTCGCCCGCGTGCCCCTCC 252911 29 100.0 37 ............................. CCGAACGCGCGGTGGACCGCATGGCCCTGCGTGGGCC 252977 29 100.0 37 ............................. CCCCGCATCGCATGCACGCACCGCTCTCGTTCGCCTC 253043 29 100.0 38 ............................. GTGCGTCCGGCGGTGCGGCAGATGGCCGCTCAGCACGA 253110 29 100.0 36 ............................. CTGCTGGCTCGCCGCAGAGTCTGCCCGACCCGCCAG 253175 29 100.0 38 ............................. ACGATGACCGGGCCGCGCTCGGTGTCGGCGATCACCAG 253242 29 100.0 37 ............................. GTCTGGAGGTGAGCGAGCGCCTTTCCTGCGGTCACCG 253308 29 100.0 35 ............................. GTGGTGACCGCCGCAGACGTGGCCCCGGCCCCGTA 253372 29 100.0 35 ............................. CCGGGCTGCGGGCCGCCGTCGCCGCCTGCCCCGAC 253436 29 100.0 38 ............................. ATGATCACGAGCCGCTGCGCGTCCCCCTCGGACGCCTT 253503 29 100.0 36 ............................. TCCAGCGATTCACCCGCGGGGGTCCACGCTGACCAA 253568 29 100.0 38 ............................. GCGTAGAGGGTTCGCGGCCGCCCTCTCGGTTCTGCTCC 253635 29 100.0 36 ............................. TGCTCGGGTGGGCGCGGGCCGGGGTGTTGGTCGTCC 253700 29 100.0 37 ............................. CCGGGTACAACGCGGGGTGGGGGCGCGTGCAGCAGTC 253766 29 96.6 36 ..................A.......... TCGAAGCGCTCCACCTCGCCAGGTGCTGAGCGAGCG 253831 29 100.0 36 ............................. ACAGGTGTACGTACCGGGCCTGCACCCAGCCCCCGC C [253842] 253897 29 89.7 35 ..................C...C....G. GCGGCGACCAGGCCGCGGTCGCGGACCTCCCGCAT 253961 29 89.7 0 .....................A....TC. | ========== ====== ====== ====== ============================= ========================================= ================== 31 29 99.2 37 CCCGTCATCAGCCCTGGAGGGCTCGCAAC # Left flank : GCTTGCCTTTCTCATCCGCTGTCGTGAAACCGACTCTGCCAACTCACAATCCTGGGTACCGATCAGGTCGTGGGCGACCCGTCGAGTTGGCCATTGCTCTCGTGCCCAGTACAAGCTCGCATTGTCCGTGTCGACATCTGCTCTGACCCGCATTGCGCTCCCAAGCCCAGTTGCTTCAGGGGCTGTTACTCCCTCGCACAGAAAGCGAGGAGCGCTGCGAACACCGATCTCCGGCACAACGACAAGGTAGTGAGAACACTTGAACGGCGAGAAACAGTGTCACGGGATGACCCACCACCGGAGTTCGGCTCGCTGCCGTCCACGTCCACTCAAGGTGCTGACTCAGTACGCTGTCCAGAACAACTGTCTTCGTTCCTCCCACAGGGCGAGCACTCGAGCCGACGCTTTGACCTGCATTGATGCACTACCGCCGGAACGCTGCACCAATCCACCCGCCGACCACCAGGAGACCACCCCTGACCAGCGACTTTACCCTCGCC # Right flank : CGGCTCGCAGAAATCCGAGTCGCCCCCAGGTAGTTGAACGGGTCCGCGCCCGGCTAAGGGCGGCCCCGTCCCCTTCTCGACTACCGCTGTCTACTGATCGACGTATTGGCAGAGAGTTCCAGAGCACGCCAGACCCGCGGCGGTGACCGACCGCAGGCTCGACCAGCCGTGGGAGGGGCCGCCATGAAGCCAGGTCGGCCAAGCTGCGGTGCTTGCTGAGGCGTCCTTGAGTAAGAAGCGCGGCGCCGGCGGCGTCACAGGATGTCGCCGGGGCCTCCGAGGTCTATGCCGAGAGTGGCGGTTTCGACCAGGTCGGGTGACCTGGTCCGGTAGGTCACGATGCTGTCGTGGGTGGGGTCGATGACGGCGTTCAGGGCTGCCGTCAGGGCGCGGTACTGGGCGGTGGAGAGTTCGCCCTGGAAGACGCTCCGCTGTGTCCAGTGCAGGTACTTGCGGCACGTCTTCAGCACTTTGGGGTTTCGTTCGACGGCCGTGTCGTA # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCGTCATCAGCCCTGGAGGGCTCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.60,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 3 262604-265460 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAELVF020000002.1 Streptomyces sp. P38-E01 scaffold2_size277852, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================== ================== 262604 29 100.0 38 ............................. ACCTGGCGGCGGTAGACGACTGCCGGCCCTGTACGCGC 262671 29 100.0 36 ............................. AGCGTGCTCCGGCCCAGCCCTGTGCGCTCCTGCAGC 262736 29 100.0 34 ............................. ACTGGCACACCGCCGAGCGCGGCGCCGTGGCGTC 262799 29 100.0 35 ............................. AATGGCTGGACATCCATAAGGGGTTCCTTGCCCAC 262863 29 100.0 38 ............................. CCGCTCCCCATCGGTTTTCCCTACCTCACCGACAGGAC 262930 29 100.0 42 ............................. GCGATTACTGCCCCCGGGGCTCGTATCGGTAATCTCTCCGAC 263001 29 100.0 35 ............................. ACGTGCTCGATCCAGCGTCCGCCGCGGGTCAGGTA 263065 29 100.0 37 ............................. GCGAGCGCCCTCCACCCCAGCGGGACGTACATGTCGC 263131 29 100.0 37 ............................. GCGGACATGGCCGAAGCGAACGACCACACGACACCGA 263197 29 100.0 35 ............................. AGCGGGAGGGCCTCGACCCGGACGCCGCCGAGGGG 263261 29 100.0 36 ............................. ACGACAGGGCCGCATCGGGGCCGTCCGACCAGCCCT 263326 29 100.0 38 ............................. TCCGACACCATGATCGGGTCGGGCCGCTCCTCCCCCTT 263393 29 100.0 36 ............................. TCGTAGCTGCGGATGATCCCGAGCTCCATCTGCATC 263458 29 100.0 37 ............................. GCGGGGGTGGGTACTGTGGTGGCCATAACGGCACTCC 263524 29 100.0 36 ............................. CAGATCGCCGGTCAGATCACCTACCGGGCGTCGCTC 263589 29 100.0 37 ............................. GCCGCCGCGGTGGTGCGCAGGGCGGCGGCCTGGTCGG 263655 29 100.0 35 ............................. AGGAGGAGGACGAGCGCTCGGGGTGGTCGGACGGG 263719 29 100.0 37 ............................. CCTGGGTGTCCGAGCGTGTTCGCGAGGCGCGCGGCGA 263785 29 100.0 37 ............................. GCGGGTCCGCGCTCAAGGGCGACTGGGTTGGCGTCGC 263851 29 100.0 34 ............................. CCGTTCACGCGGTCGCTCCCCTGCTGCTCATCGT 263914 29 100.0 39 ............................. ACGTGGTAGGCGACGCGGTCCATGTCGGCGGCCATGCGG 263982 29 100.0 38 ............................. TCCCACGTCAGGTACGAGTACGCGAACCGGGCGGCGAC 264049 29 100.0 36 ............................. ATGAACTCGGGGTCGTCGTCGGTGTAGTCCTCAGGC 264114 29 100.0 36 ............................. GTGGGTACAGCGGGGCCGTCGGCCAGGCGCTCGCCG 264179 29 100.0 36 ............................. CTGAGCTGTCTGGACGTGGACGCTGAGTTCATGGCA 264244 29 100.0 39 ............................. AGCGCTCCGCCGCGTTCTCCGCCGCCGCCTTCCACTTCG 264312 29 100.0 36 ............................. GCGACGTAGTGCGTGGCGGCGCTGATGGCGAGGCCG 264377 29 100.0 40 ............................. AGCGAAGCGAGTGGGCGAAGCCCTTGCCCCTGCGGTGGGG 264446 29 100.0 36 ............................. ACGCCCTGCTTGGCGAGTTTCGCGTCGCTCGTGTGG 264511 29 100.0 36 ............................. GCGGCAGCCGGAGGGCGGCGTGCACCTCCCGTTCCA 264576 29 100.0 37 ............................. CACGTGCGGCTGGACGGCAAGTGGACGGTCAAGTCCT 264642 29 100.0 37 ............................. GCGCGGCGGGCAGGGACACTTGCTCGCGCAGGACCCA 264708 29 100.0 36 ............................. ATGGCGTAGTAGGTTGCGCCATCGTCCCTCAGCAAC 264773 29 100.0 37 ............................. GAGAGCGGGTAGTTGATGTTGCGCTGGTGGAAGTAGC 264839 29 100.0 36 ............................. CAGGAAAGGAGCCGGCTGATCGTCGACCGCCGGAGC 264904 29 100.0 38 ............................. GCCGTCAATCGGCCTCATCGAAGCCGGCCGCGCCAGCG 264971 29 96.6 40 ............................A GCTCACGGCTGGCGTAGGTGTCGGGTCCGTAGGTGTGGCG 265040 29 100.0 35 ............................. TTCACCGGTAGGCGGGCAGCTTCTGCTCCGCGGTG 265104 29 100.0 36 ............................. CGAGGGCCTGGTCGACGGTGTAGCCGTACTTGGCCA 265169 29 100.0 36 ............................. GGTGGGGGTCGGGAGGCGCGCGGAATGCGTGCCTGG 265234 29 100.0 37 ............................. TCCGCTCCTGCGACCACTTCAGGTCGTCCCCGTCCGC 265300 29 100.0 36 ............................. AGGGCCTCCAGAGCGCGGGTTACCAGTGTGTTCTGC 265365 29 96.6 37 ...............C............. ACCCGCTGCAGGCACTGGCTCAGGGGTTCGCCAATGC 265431 29 79.3 0 ......G..............G...GCCT | G [265449] ========== ====== ====== ====== ============================= ========================================== ================== 44 29 99.4 37 GTCCTCATCAGCCCTGGAGGGCTCGCAAC # Left flank : TTGAGAGGCTGGCCCTTCCACCCCGTGTCGTGCAACGACTGTGCCAGTTCACGATTCTGGCTGCCGATCAGGTCATAGACCACGCCCCGAGCCGGACCGTGGACTTCGTTCCACGGCAAGCTCGGAACGTTCGCGTCGACGTCCACCCTGACCCGCATCCCACTCCCAAGTCTTGCTGGTTCAGCGACAGTTGAGCCCTCGCACATAGACCTCAAGGGCTGCGAAGCACTGTATTGCGACAGGGGAACAAAGGTGATGAGAACGCATAAATAGCCAGAAACATCACTGTGCGTGACCGAATGCCGTCACCTCAGCCGACCGCCCGCCCTCACCGTGCTGAGCTCGTAAGCTAGCCGGTGCCACTGACAATGGCTCAGGAACGTCAACACCCGAACCAGCCCACCACTCTGACCTGCACTGATGCACTACCGCCAGAACGCTGCAAAAACCGACCCGGCAGCCCACCCCAAGACCACCCCGACCAGCAGCTTTACCCTCGG # Right flank : TGCTTTCGACGGAGCGGCCTTCACGCGGGGGCCGGGCCGTCGTCGAGGGCATGGTCAGCACCGTCGACGGCGCCGGCGCGGTCGGCCGGGTGGAAAGCGGGGCGGGCTCTGCTACTCGGGTTGGTACACGGCCCAGGTCTTCGGCGTCTCCGAGACCCGTACTGCGGTCAGTTCGGGGAACTCTCCGATCCAGCGGTCGAAGATCCAACGTGCCAGGTGCTCTGCGGAGGGCGAGAGGTCACCGAGGGCGTCGTTGAGGTGGCGGTGGTCCAGGGTGTCGTCGATCCACGCCTTGACGACGCCCAGTTCCCGGTAGTCGCGGACGAAGCCGACGTCCGACAACTGCTCGTCCTGGGCGCGGAGTTCGAGGACCACCACGTAGTTGTGCCCGTGCATCCGGGAGCACGGATGCCAGGAGGGCAGTCGGGCGAGCACGTGGCTGGCTGAGAAATTGAACTCCTTGGAAATTGTGTACATGCCCGGCTTCGCGCCTTCTGCTC # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCATCAGCCCTGGAGGGCTCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.60,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-28.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 1 3539787-3538659 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAELVF020000001.1 Streptomyces sp. P38-E01 scaffold1_size4878575, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 3539786 30 96.7 31 .............................T TCGAGGTCCGCTTGATGGGGGCGACGCAGAT 3539725 30 100.0 31 .............................. CGTGCTGGGGGTGTCCTCGCCGGGCGCCCAG 3539664 30 100.0 31 .............................. CGCAGCACTGGCCCGACCCCGTCAGGGTGGA 3539603 30 100.0 31 .............................. GCTCGCGGTGCCGGATGGGGATGCGCGCGCC 3539542 30 96.7 31 .............................A CGTCTTCGCCGCCAGCACCACCACACCGAGC 3539481 30 100.0 31 .............................. GACGTGGTCGCAGATCAACCTGGACGCTTTC 3539420 30 96.7 31 .............................G CCGATTCGATCCGCGCGCTGATCGGGGCCCG 3539359 30 96.7 31 .............................A GCTACCCCGAGATGATCCGGCGCGATCAGGA 3539298 30 96.7 31 .............................T CGTTGACCGACCGGGGCGGCGCCTCGATGCC 3539237 30 96.7 31 .............................T GGTCGTGGATCGACAGCTTCAGGTCGCGGTT 3539176 30 100.0 31 .............................. CGCGGAACTGCGGCTCGATCTTGAGCCCGGA 3539115 30 100.0 31 .............................. CACCGCCACCGGGCTTTCACCGGTCATCACG 3539054 30 100.0 31 .............................. GCCGCACCTACGCGGCGCTCTGCGACGTGTA 3538993 30 100.0 31 .............................. CCCAGATGCCGAGGGCTCTGCGCAGCTCGGC 3538932 30 96.7 31 .............................T ACGGCCGGACCTTCGGGTGGCTGAAGCAGCA 3538871 30 96.7 31 .............................T CGACGGCCCGGTTGGGGCGGCAGTTCCCGGA 3538810 30 96.7 31 .............................G CCGGATATCCAGAGATCGCGGCTCACTATCG 3538749 30 96.7 31 ..............G............... CGGGCTCGGACGTCGTCGACACCAGCCTCCA 3538688 30 93.3 0 ..........T..............G.... | ========== ====== ====== ====== ============================== =============================== ================== 19 30 97.9 31 GTGCTCTCCGCGCGAGCGGAGGTGAACCGC # Left flank : GCCAACGCAGCCCTCTACCGCGTCGCCCTGGTCCGCATGTCCAGCGACGCCCGGACCCGGGCCTACGTCGCACGACAGACCGCTGCCGGACGGACCAAGAAGGAAATCATCCGGATGCTGAAACGGGCCATCGCCCGGGAGATGTTCCGCTGCCTCACCACCACGGTCACCATCCCGGGCACAGCCGATCTGCGTCCCTTGCGGCAGGCCAAGAACATCACTCTCACCGCTGTCGCCCAGCACTTCGGAGTCTGGCCCACCACCATCTCCAGAATCGAACGAGGACTCAGCAGAGACGACGACCTCACCTACGCCTACCGCAACTGGCTCCAAGCCGCTTGACAGCAATAGGAGCATCAGTGCCGCCTGACCAGCCCATACGCTCCTCCACTCCCGACCGGCCAGTTAGAGTGCATCGCATGCGACTTGCCTATCCACACGGCCCAGCCGCTCTCGGCTACGAAACGGCAAAGCGCCTCTGACGCTGCAGTTCAGGAAGG # Right flank : ACTGGCGTACACGATGTGGCGCGCGCAGTGATGACCTCGGGATTTTCTGCAGCTGCCCGGGCAAGGCGGTCAGCGCAGTGATCGTGGGCTGAGCACTGTGCTCGGTTGCATCGGAAATCTGAGCAGAGCGCCCACTGCACGGAACACCGTGCACTCCATAGCGTTCCCCTAGATCCCTACCAGCACGTTCATGGGTTCGAGTGAAAACACCGCGTCAGCAACAGAAGCAAGCTCCGCGGTCCCTAGCGTCAGCACGGTGAACACCGACACGCTCACCACCCCCGAGGCCAACGCCGAACAGCTCCGCAACGCCCTGGTCGACCAGATCAAGGCCGCCGGCCACGCCCGCACCACGCCGGTCGAAGTGGCCCTACGTACCGTGCCCCGGCACCTGTTCGTCCCCGATACTCCGCTGGTCGACGCCTACGACAACAGCCCGGTCAACGTGAAGTACGACCCCGAGGGCACCTCGATTTCCTGCGCATCCCAGCCGGCCGTCG # Questionable array : NO Score: 5.80 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.64, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTCCGCGCGAGCGGAGGTGAACCGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCTCCGCGCGAGCGGAGGTGAACCGG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.10,-11.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3550968-3552338 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAELVF020000001.1 Streptomyces sp. P38-E01 scaffold1_size4878575, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 3550968 30 96.7 31 .............................T CCTTCATCGTGTGGGTGATGATCGCGGAGCC 3551029 30 96.7 31 .............................G CGCCGAATCCGGCGAGCTTGGCGAGGTGGTA 3551090 30 100.0 31 .............................. CCCCCGGCACCCACGCTGGCCGACCACATCC 3551151 30 96.7 31 .............................A AACCGCCTCTGGCAGGGCCCGCGCTGGAACG 3551212 30 96.7 31 .............................T TCGAGGGCCTGACGTACGCGCGGCCTGGGGT 3551273 30 100.0 31 .............................. TGCTGCGTCGGGCGGTGGCTTGGGCGGTGGC 3551334 30 96.7 31 .............................T AGCTGATCCATGTCCTTCTCAGGGCGCATCG 3551395 30 100.0 31 .............................. GCCTTCTACCAGCCCGCGCACGCCACCATCT 3551456 30 96.7 31 .............................A GGTCGTTGATGGCACGGGTGAGGCCGGAGTA 3551517 30 100.0 31 .............................. TGCGCTACGCCGCTCCGCTCGCCTGACACAC 3551578 30 96.7 31 .............................T TCCTGCGGGGCCGGGGCGTCTCGCTGTAGCG 3551639 30 96.7 31 .............................T AGCCACCCCCGCGCTGAGCGAATGCCTGACC 3551700 30 96.7 31 .............................A TTCTGCGGGCGGAGCCGATCGCGCAGGAGAT 3551761 30 96.7 31 .............................T GGTGCGCTTCGCACTCCACCGCAGCCACGAA 3551822 30 96.7 31 .............................A TCGGTGTCTGCGGAACCCCGGTGTATGGCGA 3551883 30 96.7 30 .............................G TGGGGGTGCGGGCCTCTCTGACGTCCCGGT 3551943 30 96.7 31 .............................T ACGACGATCTTCCTCGGCCAGGGTGGCCCGC 3552004 30 100.0 31 .............................. GGGGCACCGCCCCGGCCTCCGTCGCCACGGT 3552065 30 96.7 31 .............................A CGTCGATGGCGGCGAGCGCCTGGTCGACGCT 3552126 30 100.0 31 .............................. TGGAAGGGCACGAGCGCGGCGGCCTGGCGGT 3552187 30 100.0 31 .............................. CGACATCGTCGCCGCCAGGGCCGACGTACTG 3552248 30 93.3 31 ............................TT CAGCGCAGCCTCGCGGTCGAACGCGACCCTG 3552309 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== =============================== ================== 23 30 97.7 31 GTGCTCTCTGCGCGAGCGGAGGTGAACCGC # Left flank : CTGCCACGGATCGTCCACGACATCCAGGACCTCCTGGACCCCGGAAGCGATCGCGAAGCACCCGACCCGGAGGAAGAACTCGTCGACCTGTGGGACCCGGTCACCGGCCGTGTGCCCGGTGGCACCAATCACGCCAACCACAACTGACGCCATCGGGAAGGCAATCGTTCGTGGCCTCCATGATCGTTCTCTCTGCAACCTCGGTCCCTGACCATCTCAGAGGCGCCCTCTCGCGATGGCTGCTCGAGGTCACGCCAGAGCTCTACATCGGGACTGTCTCCGCTCGTGTGCGGGATGAACTCTGGCAATCCGTGTGTTCCTGCACCGACGGAGGAACCGCTGTCCTGGCCTACCCCAACGACAACGAGCAGGGCTTCGACATACGGACCGCCGGACCTCAACGCCGCACACCGACTGACTTCGACGGGCTCACCCTGATCGCCTTCGACAGAAAGAGTCAAGACATGGCAATGCTCCTCTAGCGACCCAGCTCAGAAAGG # Right flank : CCATCACCGTCGGGTGCGACCCGGACTAGGCCGTGTTTTAGAACTGGTCTCCGGGTCTTGCCTTGCGGCGTGATGATCATGGTGTGGGGCGAGGGGATCTTTCTGATGAGCAGTGGTCGGTGCTGGAGCCGTTGTTGCCGGCGGTGAGGTTGGGTCGTCGGCCGCAGAACCGTCGGCGTTTGATCGACGGGGTGCGGTGGCGGGTGCGGACCGGTGTTCCCTGGCGTGATCTGCCGGGCGAGTACGGACCCTGGCAGACCGTGTATGGGCTCTTCCGCCGGTGGCAACGCGAGGGTGTGTGGGTTCGGCTGCTGGCCTCGCTCCAGGCGCGGGCCGATGCGGCCGGGCTGGTCACGTGGGAGGTGAACGTCGACTCCACGGTCTGCCGGGCTCATCAGCACGCCGCTGGTGCCCGCCGAGACGGGGTCGGGCAGAAGGAGCCGCCCGGCGGGGTCGGCCAAGAGCCGGACGATCACGGCCTGGGACGGTCCAGGGGCGGG # Questionable array : NO Score: 5.65 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.50, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTCTGCGCGAGCGGAGGTGAACCGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCTCCGCGCGAGCGGAGGTGAACCGG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.50,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 3553673-3555394 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAELVF020000001.1 Streptomyces sp. P38-E01 scaffold1_size4878575, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================================================================================================= ================== 3553673 30 100.0 31 .............................. ACGTATACGGGCAGATCCGTGCCGAGCTTGA 3553734 30 96.7 31 .............................T ACCGGATAGCCGCCGCCAACCGGCCGCCGTC 3553795 30 96.7 41 .............................C CCGAGCCAGAAGCTGTGGACCTGCTCCGCAGGGCCGCTGCC 3553866 30 100.0 31 .............................. CATCACCTGCGGAGAGTTCCAGTGCGGATTC 3553927 30 100.0 31 .............................. GGCCGTACCCCACATCGGTGGGGACGCGTCA 3553988 30 96.7 31 .............................T TCAGGATGTGGGCCACCTGATTGGTGGTCTG 3554049 30 93.3 31 ............................AC TGGAGGCGGTGCCCGGAGCCGGCCCCGGCCG 3554110 30 100.0 31 .............................. GTCCTGCGCCGCTCGATAAGCGCATCCTCAC 3554171 30 100.0 31 .............................. CGCCCCGTAGGGCTCGCAAGGGGGCCCGTCG 3554232 30 100.0 31 .............................. CCCGGGACCGGTAGGCGAAGGGGTCGCCGTC 3554293 30 93.3 31 .........................G...T CGGGGAGGGGGCGGCGGCCGGGCTCGCCGAC 3554354 30 100.0 31 .............................. CGAGTTCCCCGCGTGGGAGGCCGCCGAGGCG 3554415 30 100.0 31 .............................. TCGACGACCGGTCGCGCGTGATCTTCGAGCA 3554476 30 100.0 31 .............................. CTCCGTGCTACCTGGAGGTAGACCGGAGTGC 3554537 30 96.7 31 .............................T AGGTGAGCGCCGCTGTGTCGAAGGCGGCCCA 3554598 30 100.0 31 .............................. TCGGCGACCCGGTCCCCGGCGGCGTCGAGGC 3554659 30 100.0 31 .............................. GTTTCGCGGGTGCGCAGCCTTGGCGACGCGG 3554720 30 100.0 31 .............................. CCACGGCGGAGGCCGCCGAGGTGGAGACGAT 3554781 30 96.7 31 .............................A CCGACGAACTGGCCTACCCCGGCACGAGTGA 3554842 30 100.0 31 .............................. TGCGGGGGGTTACGCACGTGCGGGTAGGCGT 3554903 30 96.7 31 .............................C GCCGTCCGTCACCTCCTGGCGCAGTGCACCG 3554964 30 96.7 31 .............................C CTTTGACGTACGGTATTTTCCGCTTGTCTCG 3555025 30 93.3 32 ............................AT GACATGCGCGTATCTGGCACCCCGCACCCGGC 3555087 30 96.7 31 .............................C TGCTGGTCCTCGTGGCCTATGACGTGGCCGG 3555148 30 90.0 32 ................T...A........C GTTGGGGTGTTCGGTGTCCGGCGGCGGGAAGG 3555210 30 96.7 125 .........T.................... CCACGCTAGGGAAGCCGACGGGTGGGAGAGCCTGCTTAGTGCGCGAGCCAGGGGAGGGTCAGCGACTCAGCCTACTCACGTTGAGTGGGCTGGACTCTCCGCGCGGGGAAGGTGAACTATCGTCG 3555365 30 76.7 0 A.....C.C.......T..G....G....T | ========== ====== ====== ====== ============================== ============================================================================================================================= ================== 27 30 96.9 35 GTGCTCTCTGCGCGAGCGGAGGTGAACCGG # Left flank : GGTCGAGTGCGGGATCAGCCGGCTCAAGCAACACCGGGCGGTGGCGACGCGTTACGACAAGCTGGCGGTCCGCTTCGAGGCCACCGTGCAGATCGCGGCGATCCACCAGTGGCTGTGACCCATCGGCTGGTCGTCCGGCCGTGCCATCCTGGCCACCGGTTCGATCAGCACGCACATGGGGAGGACCTGTGGCCGCCGGGCACTACTGCGCCGACAGCGAGAACGGCGACCACGTCGACGACCCGTCCGAGGATGCCCTATTCATGCTGATCAGCGATCTGAACGACAGCGACAACACCTTCATCGTCATCCAGCCCGACGAGGACGAGCCAGCCTGGTTCGCCTCTGTCTCCGTCCTAGACGAGGACGGATTCGAGATCGTCCGCCACGACACCACCTGCCGCGAGCACGACATCGCCATCGAGAACCATCGTGACCGGATCGCGGGCGACCTCACCAAATGGCTGGCCGCCCGCGACTTCTAAAACACGGCCTACGTC # Right flank : TGGTGCCCGTGTGTGGGCATAGCGGCAAAGTGGCCGGGCCCGAGCGGCTCCGGAAGATGGTAGGGCGTGTGGCGGCTTTCCCGCTGTCCGTTCTCGAGCCTTGTCCGGCCACCCGCACTTATCGTTTTGGAGGATTCGTTCATGCGCCCGGCCCGGTTCCAAGATTTCGTGCTTGATCTCGCTCGCATCGCACCTGACGGGGGGCAGCCGAAGCCGCTTGCGGATGTCGGGGAGAAGCGGTATCCGTACGGCGTGGTTGCGCACGCTGGCGGGAAGGAAATCCGGTACCAGATCATCGCGGAGTCGCGTGCCGGTGACGACTTCGACCAGCCGGAGAAGATCAGAGAGGCCGACCAGGCTTTCGACCCTGACGCGGTGCCTGCCGGCGGGCTCTTCGAAGAGCGGTGGCTGGCCGAACTCGTGGCAAAATCCGGCACTCGCGAGTTGACCGACATCGCCATCTGGTCTGCTCGCGAGGGCAACAGGAAAGGCAACGATGG # Questionable array : NO Score: 5.53 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:-0.30, 8:1, 9:0.73, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTCTGCGCGAGCGGAGGTGAACCGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCTCCGCGCGAGCGGAGGTGAACCGG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.50,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //