Array 1 427677-428802 **** Predicted by CRISPRDetect 2.4 *** >NZ_MLUT01000002.1 Salmonella enterica subsp. enterica serovar Braenderup strain CFSAN044976 CFSAN044976_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 427677 29 96.6 32 ..........T.................. GAACGAGTAATCTTTGTTTTCCCCGTACCTTC 427738 29 96.6 32 ..........T.................. CGAGGATAGTTGTACCAGGTCAGGCCGCGCTG 427799 29 96.6 32 ..........T.................. CAAAATCAAAATTTCGAAATAAATGATTGGAA 427860 29 96.6 32 ..........T.................. TCAAACGGTTCTGGAACATCTAAAAATACATG 427921 29 96.6 32 ..........T.................. CTGGCTGTCTGCGTGATAAATGCAGAGTGTGA 427982 29 100.0 32 ............................. CAGGAATTGGGGATGTTACCTGAAGATGTGAA 428043 29 100.0 32 ............................. TTCAGAACGATTATATTTTGATTTGTGTTCAG 428104 29 100.0 32 ............................. ACCGAGAGTGACATTTTCCCACTACTGGCTGG 428165 29 100.0 32 ............................. GACGCCATGCGCTACGTAGCGACGCGTGTTGA 428226 29 100.0 32 ............................. GAGAGTCGTGGTGAACTGGCAGTGCTCCGGTG 428287 29 100.0 32 ............................. AGATTGGCTATTGCGGTAGCATACTGACTCTT 428348 29 100.0 32 ............................. ATTTTTTGCGGTTCAATCAGCTCATACCACAG 428409 29 100.0 32 ............................. ACAAAGCCAAGCGCTATATGGCCGGTATTTTT 428470 29 100.0 32 ............................. CGCAATGAACTTTGTCGCGCCGCGAGGCGTGC 428531 29 100.0 32 ............................. ATGGTAAATATGAATTTAATGTCTATCCTGGG 428592 29 100.0 32 ............................. CCATGCTCCAGGGTAGCCAACCTGCAAGTAAT 428653 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 428714 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 428775 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGTGATTATGTTGGTAGAATGTAATGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTGATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGAGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGTGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 445061-447167 **** Predicted by CRISPRDetect 2.4 *** >NZ_MLUT01000002.1 Salmonella enterica subsp. enterica serovar Braenderup strain CFSAN044976 CFSAN044976_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 445061 29 100.0 32 ............................. GCGGACTCCTGCACCTCTTTGAGCCCGTCGAT 445122 29 100.0 32 ............................. TCAGCGTAGGTTGTTGATGTTCCCACCAGCCC 445183 29 100.0 32 ............................. GCCACAATCAGATCGAAACGCTCCGGATCACC 445244 29 100.0 33 ............................. TTGTCACTGCCCCTGTTGAATCAATACAGCCAC 445306 29 100.0 32 ............................. CAGGTCGGTTATCTCGAAGCTGCCCGCTCTGC 445367 29 100.0 32 ............................. AGGGCTGGCTGACGCGCACCGAGCGCCGCAAC 445428 29 100.0 32 ............................. GGGCTATATCCACGCCAAAGGGCCGCGCGACA 445489 29 100.0 32 ............................. CCAGGCACTAACTCGCAGTATCACTCCCTGCC 445550 29 100.0 32 ............................. GTCATCGCCGGTGAGGTATTTTTTTGGCTTAG 445611 29 100.0 32 ............................. GATAGCGCGGAAATTGCCGAGGTTATAGCTAA 445672 29 100.0 32 ............................. CGTCCAATACGAGCCGAGTGCTCACGCCCTTA 445733 29 100.0 32 ............................. TTGAGGAATTCTTCCCGCAACGCCTGTTTGTC 445794 29 100.0 32 ............................. CCCTGCCCGGCGATTGGATTATTCGCGGTGTT 445855 29 100.0 32 ............................. GGGGCTATTGAGGTTTGCCAGCACAACCTGTC 445916 29 100.0 32 ............................. TTCCACGCGTCGTCGTCAAACCTCGATTTCGG 445977 29 100.0 33 ............................. CAGAACCTGGCTGATGAGGAACTTTCAATCTGC 446039 29 100.0 32 ............................. TGCGATCTAATCTCCTCTGGCGTGACTGTACG 446100 29 100.0 33 ............................. TTGCCAGCCGAGGCCGTTACCGTTCGCCAGAAC 446162 29 100.0 32 ............................. CGCTGAATTCCGATATTCCGCCGTATTGCACG 446223 29 96.6 32 ............................T TTACGCAATATTAACAGACCAGGGAGCAGCGC 446284 29 100.0 32 ............................. GGGTTATCTCCCTGCCGTTAAAACGGACGTTT 446345 29 100.0 32 ............................. CTCATTTGCCTTGCTTGATGACCACTGCGGTA 446406 29 100.0 32 ............................. TCATCGAGTACGGAAAATCCGTTTTTATTGTA 446467 29 96.6 32 .............C............... CTACGAAGGCGTCTTTATGGCGCACAGTACCA 446528 29 96.6 32 .............C............... CCGTCCAGCTCCACATGCTCGCCAATCTCCTG 446589 29 96.6 32 .............C............... GTTGGCAGCATGATCGCTAAATCTAAAATGCC 446650 29 96.6 32 .............C............... TTAGCCATCCCCATACCAAAGTTAAAGTCGTA 446711 29 96.6 32 .............C............... CCTGGCAAATTATTTCCTGGATACTCGATATC 446772 29 96.6 32 .............C............... GCTGCGTTCAACAACGGGGAAATGCCGGAGAA 446833 29 96.6 32 .............C............... GGCAACTGGGCGATCATCTGGGCGCTGTTTAT 446894 29 96.6 32 .............C............... CATTCGCTCAATAGCGGCCCGCGTGGCGGTGA 446955 29 96.6 32 .............C............... GGGATTATGTCCTCTAAAGACTGGCTAATCAC 447016 29 93.1 32 .............C...........G... TTGAATACGTCGCGATACCAGTCACTCCGGAA 447077 29 96.6 32 ..C.......................... AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 447138 29 89.7 0 A...........TC............... | A [447164] ========== ====== ====== ====== ============================= ================================= ================== 35 29 98.4 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGCAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //