Array 1 1415-286 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP023977.1 Streptomyces alboflavus strain MDJK44 plasmid pMDJK44.2, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 1414 30 93.3 32 ............................AG GGGTCCGCACCAGTCCGGACCCCTCCCCGTGT 1352 30 96.7 31 .............................T TCTCCTCCGCAGGCTCGACCCCTTGTCCCTT 1291 30 96.7 31 .............................A CCCGGCAGCGGCTCGCCAAGAGTCGTGTGCA 1230 30 100.0 31 .............................. CTCGCCCACCACGCAGGCATCGACCGGTCGA 1169 30 96.7 31 .............................G CGACTTCCTGGCCGCCCTCACCCGGAGCAAC 1108 30 100.0 31 .............................. ACCTCCGCGTCCTCGCCCGCCGAGCCGGAAT 1047 30 96.7 31 .............................A TCAAAATGGCCAACATCGTCTTCAACGTGGC 986 30 96.7 31 .............................A GATCACCCGGCAGTCTGAACAGGCGGAGGAC 925 30 100.0 31 .............................. TTCCTCTTCACGTACCGGCCGCGCCGCTTCT 864 30 96.7 31 .............................T ACTGACGAAGAAGACGGCATCGACAAACACT 803 30 96.7 31 .............................G CCCTGTTTCGCTGACGGGCTGCCTGTGGTCC 742 30 96.7 31 .............................G GGATCGGCGTCGCTGTGGCGGTGCCGGTGTC 681 30 100.0 31 .............................. AGATTCCGGAGCGTGTGCTTGAGGCGGAGAT 620 30 96.7 31 .............................T TCGCCGACTTCCCCGCCATCCTCATGCCCGC 559 30 96.7 31 .............................G GTGCCCGAACCCGTACAGCCCTTGGGCGAAA 498 30 93.3 31 ...........................T.T GGATCGCCTCGTCGGTGGCCTCCCGCAGCGA 437 30 100.0 31 .............................. GGCTGTCCTGGTGTGCCCCGGTCGCGTTCCC 376 30 86.7 31 ..C.........AT...............G TCACCACCATGCAGCTGGCAGGCGGGGACTG 315 30 76.7 0 .......T....GT..........GTT.T. | ========== ====== ====== ====== ============================== ================================ ================== 19 30 95.6 31 GTGCTCTCCGCGTGAGCGGAGGTGAACCGC # Left flank : CCTCCCGCACGGACGCGAACGCGCCCGGCACCTGAGCCTGGAACGGCGGAGTGATCTTTCCGAGGTCGTGCAGCCCCGCCCAAAACGAGAGCACCGCCCGGGTATCGCTCACCGACAGGTCAAGCGCGTGGGCGATCCGGTCACGCACGCGATCGCTGAGCAGGACATCCCACAAGGTCCCGAACGCAGCAGCCGTGTCCAGGAGGTGGCAGATCACGGGGTAGGGGTGCGGCAGGCCGCGTTCCTTTCCCCACATCCGAACGTCGACGTTCCTGCCCAGGCGTAAGTGACTGTCTTGCTTCGACATAGCACCAGAGATAGCAGCGGTCACTGACAACGGGCCCTGAACAGGCGAAAGTTGCAGCTGACGCCTCCGTTGGCTGGGACCATAGACTGCCTCTATGCCTCAGCTTCGAATGTTGCCTTGCGACGTGGGAGCGGCGCCGCGTCGCGAGGTTCAAGAATCGGCAAAGCCGCTGTAACGGGGCAGGTTGGAAAGG # Right flank : CCTCGACCCGGCGGATGAGGTGGCCGCACACTCCCTACAGCTACGGTGTGTAACCGCAGCAGAGGGCATCTGAGGTGAGCCTCTCCAGCTCACGCTGCAACTCTCATGCGAAGTTGTCGCCGCTCCACTCTGCGTGTCGAGACTCGGGCAGGACCTCTGACTGGCGGTGAGGCAATTGCCTCACCGCGCCGGATCAAGCGGGACTGAACGGGGTTCGGTGGGGCCGAATCGGGTGGACATGTCCGGTTCCCCGGTAAAACCGCAGGTGAGATGGGTCACCGGTTTA # Questionable array : NO Score: 5.42 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.38, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTCCGCGTGAGCGGAGGTGAACCGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCTCCGCGCGAGCGGAGGTGAACCGG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.10,-11.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 11060-15235 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP023977.1 Streptomyces alboflavus strain MDJK44 plasmid pMDJK44.2, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 11060 29 100.0 32 ............................. CCTGCTCGTCGGTGGGCTCCTCGACGTCCTCC 11121 29 96.6 32 ............................A CGCCGGCTTCGACTGGGCTGCCACTGGACCCC 11182 29 100.0 32 ............................. GTCATGGGCCACACCGCGAACGACCTGATCCT 11243 29 100.0 32 ............................. ATCCAATCCTCCAACGGCACCAGCGTGATCGT 11304 29 100.0 32 ............................. ATGTGCCGGTTGCGGGTGATGGTCTCGGTGTA 11365 29 96.6 33 ............................A GATCTGCCCCACCTCGCTCAACCGCGCCCGGTC 11427 29 100.0 32 ............................. CTGGGGCGGGTCCACATGATCGGGTGGGGGCG 11488 29 100.0 32 ............................. CAGGACGAAATGTCCGGCTACGAGATCACCAT 11549 29 100.0 32 ............................. AGGGTGTTCGCCGTCCAAGGCGAGGCGGAGTT 11610 29 100.0 32 ............................. CGAACGACCAGCCGACCGGACGCCGCGACCCA 11671 29 100.0 32 ............................. GTGCTCTCCGGCAACCCGCGCGCTGCCTATTT 11732 29 100.0 32 ............................. ATCCGCGCTGACATAGCCGCCTTGATCCGTGA 11793 29 100.0 32 ............................. TTGCGTGACGTCGAGGGATAGCACTTCGTCGA 11854 29 100.0 32 ............................. TGTCTCAACGCCCATGGGCGGGCCCCAATCTC 11915 29 100.0 32 ............................. GAGATCGCGTGTGAAACCTGCGGGCAGGGCTT 11976 29 100.0 32 ............................. AATCAGGCTTCCTCGTCCTTTCGCTTCCCCAA 12037 29 100.0 32 ............................. ACGTACACGTGCCGGGACGGCGCGAGGCCGCC 12098 29 100.0 32 ............................. CGACAGGTCCGCGCCGATGACCAGTGGCCGGG 12159 29 100.0 32 ............................. AGGAAGCGCGAGCGCAAGCGCAACATGCAGAT 12220 29 100.0 32 ............................. CTCACCTTCGATCCGACCGACGCCGGGGCGAC 12281 29 100.0 32 ............................. CTCAATCTCAACTCCGAGAAGGCGCGAAACGC 12342 29 100.0 32 ............................. TTGTCCCGGTTTTTCCGGTTGCGGACGGCGGC 12403 29 100.0 32 ............................. CAGCGGGAGATCATGCTCAGCGTCCGGGACAA 12464 29 100.0 32 ............................. CCATCGTCGGCGGCGAGCGTCGGGCTGCCGGA 12525 29 100.0 32 ............................. GCCGCCCAGCCCTTGACGCGGGCGTTCTGCCG 12586 29 100.0 32 ............................. GTGTTGCACGTCTCGATGTCGTTGGAGTGCGG 12647 29 100.0 32 ............................. CCGCAGGCCACCGCCGACTTCCACTGGGTGAT 12708 29 100.0 32 ............................. GTGTACAAAGCCAAGAAGCGGCGGCCGTAGCT 12769 29 100.0 32 ............................. GCCATGCGGTTCACCCACCCCCACGTCGACCC 12830 29 100.0 32 ............................. CCGCCTAGGCGCCCGCCTAAGCGCCTGGGAGT 12891 29 100.0 32 ............................. CAATCGCTCGCGTTGAGGATCCTGCAGAGCGC 12952 29 100.0 32 ............................. GCCGCCGCCGTCCTCGTCGGAGTCTGACCGTG 13013 29 100.0 32 ............................. GATGTGCCGCCCGAGGTGTCGACCTGGGGGCG 13074 29 100.0 32 ............................. CCCTGGGACAGTACCTCGCGCGCAAGCCCCTG 13135 29 100.0 32 ............................. GTGCCGATCCGGCGGGGGTTCACGACCACGTC 13196 29 100.0 32 ............................. CGTCTTCCTCCCCGGATGCGGGGGTACGTCGA 13257 29 100.0 32 ............................. CGCCAGCCGGTGATCGTCGTGGGCAAGGACTG 13318 29 100.0 32 ............................. CGACCGCCACCGCCAGCTTGCACCACATCGCC 13379 29 100.0 32 ............................. CCGTACGCCCAGCAGGGCCATCCCGCCCCGAT 13440 29 100.0 32 ............................. ACGTAGTCGGTGCCGACGTCGCCGCACATCGC 13501 29 100.0 32 ............................. TAGTTCGGACCGGCGAGGCCATCGCTGTTGGT 13562 29 100.0 32 ............................. GTGGCTGGGGGTCTGTGGTGCATGAGAGGAAT 13623 29 100.0 32 ............................. CTCTTGGTCGTCACGTCCTGACTGTCGGTGTC 13684 29 100.0 32 ............................. ATCGTGAGCAGGCGTTGAGCAGCACCTTGAGC 13745 29 100.0 31 ............................. CACCACGCACAGCGAGGAACTGCTGCTCCGG 13805 29 100.0 32 ............................. CAGATGCCTGAGGCCTGGCCGAGTCTCCTCGC 13866 29 100.0 32 ............................. ACGGTCATGGTCTGGGTCCTGGGGTCAGGCGC 13927 29 100.0 32 ............................. TCGTCGAGCGGGACCAGCACAACCTGGGTGTC 13988 29 100.0 32 ............................. CCGTAACCCCCACACCACAGGAGCCCGCGCCA 14049 29 100.0 32 ............................. TCCCCCTTCCTGGCGGCCTTGGCGATCGTCGA 14110 29 100.0 32 ............................. ACCTGCTGCCACGTGTCGAACTCCGCCAAAAC 14171 29 100.0 32 ............................. GTGCGCGAACTGATCCCCGCCTACTGGCAGTA 14232 29 100.0 32 ............................. CCGAGGCGGTCGTCCAGAAGCTGGTAACCGAC 14293 29 100.0 32 ............................. TTCTCCAGGCGGGCCGACCGGATCTTCGTGCG 14354 29 96.6 32 ............................A CGCACGGCGGCGCTCTGGCTCTGGCTGGGGAG 14415 29 96.6 32 .............C............... GAGTCCATATCCCCAGTGTTGAGGGCGCGGAT 14476 29 100.0 32 ............................. TTGAGGGCCTCGGGGAAGATCTGGTCGAGGAA 14537 29 93.1 32 ............C...........T.... TTCAGCCAGCCCCAGGCGTCCACGAGAAATTG 14598 29 89.7 32 ..T.........C...........T.... TTCGGCGCCGCACGTCCCGTACCCAACGCGAA 14659 29 93.1 32 ..T......................A... GGCGCGTCCCGGATGGCCTGTGTGACGGCTCG 14720 29 96.6 32 ...G......................... AGCGTCCACGTCCCGAAGAAGCGGAACAGCGA 14781 29 89.7 32 ...G............T.......T.... TGGCGGGCAGATCGACGATGACGGGCTGATAG 14842 29 100.0 32 ............................. CCGCTAATCCCGGTGATCGTGCAGGTGGTGGG 14903 29 89.7 32 .G.G........C................ TCCTATGACTTTCCGGACAACGGTTCCGATTG 14964 29 96.6 32 ...G......................... ATCTTCTCCGCCGGGCCGCGGACATGGAACCG 15025 29 75.9 32 ..T.....T.T.C...A...A...T.... GCCGCCTTCAGGGCGGTGCCGCAGTGCAGGTC 15086 28 89.7 32 ..T.-.......C................ TCGCTCTGGCTCCCGCTCAGACAGCACCTTCA 15146 29 93.1 32 ...G....................T.... ACCTGCCGCTGGATGTCGTGGCAGGTCGCGTC 15207 29 93.1 0 ...................G....T.... | ========== ====== ====== ====== ============================= ================================= ================== 69 29 98.4 32 GTGCTCTCCGCGAGAGCGGAGGTGGTCCG # Left flank : CCCGCATCGTCACCGACATCCAGCAACTCCTCGACCCCGACACCCCTTATGACGCCCCCGACCCCGAAGAACACCTCGTCGACCTCTGGGACCCCATCAGCGGCGCCATCCCCGGCGGAAAGAACCACGGAGCCGACACCTGACACCGCACCCGAAGGATCACACCACCCATGGCCTCGATGATCGTGCTCTCCGTCACCGCAGTCCCCGACCATCTCCGCGGCGCCCTCACCCGCTGGCTCCTCGAAGTCACCCCCCAGCTGTACGTGGGAACCGTCTCCGCCCGCGTACGCGACCAACTCTGGTCATCGATCACCGCCTGCACCGGCGACGGCACCTCAGTCCTCGCCTACCCCACCGACAACGAACAGGGCTTCGCCCTACGCACCGCCGGCCCTCAGCGCCGCACACCGATCGACTTCGACGGCCTCACCCTCGTGGCCTTCCGGCACGATGGCAAAGAAACTGCAAACCCCTCGTAGAGCTGCAGGTCGGGAAGG # Right flank : GCAGGCCCGCCCCCACCGTCGGCAGCGGGTACGGAGCGCAGTTCAGCGTCGTCATAGGCGCGAGGCCTACGGCCATGGCAGCTCGTACGTCATCCGCTGACCACGGCGAAGACGAAGCCGGCGACCAGAGCCCCGACAGCGGCTCCAGCAACGGTCTGGGCCACCGTGTGGTCGCGCAGGATGATCCGGGACCAAGCGATCACTGCGACAACCGGGGCGGCGATCCACAGGAGAGGGCTGTACGCGTCGGCGAGCATCGCGAGAGCCCCCGCGGCCACGCTGGTGTGGACCGAGACCTTCCAGAACGCCGTGATGGGAAGCAGAACGGCGAGGGTGGCCAGCATCGCGACGACCAGAGCCAGCATCTGGCGGGGCGCCTCGAGCCAGAGCATGCCTCCGATGGCCGTGGCGACGGACGCCATGATGACGGGGATGAGGAGCAGGCGGCGCTGCCTCTGGCCTATGTGCCGGTCGGCCCACATACCGCGGCGCATGCCGTA # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTCCGCGAGAGCGGAGGTGGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCTCCGCGGGAGCGGAGGTGGTCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.70,-10.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-31] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [40.0-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 87001-85143 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP023977.1 Streptomyces alboflavus strain MDJK44 plasmid pMDJK44.2, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 87000 29 100.0 32 ............................. GGGTCCAGTGGCAGCCCAGTCGAAGCCGGCGT 86939 29 100.0 32 ............................. CAGCTCGGCAAGATCCGGCGTGATCTGGCGTC 86878 29 100.0 32 ............................. CCTGCTGTCGATCTCCGACACCGGCTCCACCC 86817 29 100.0 32 ............................. GAATTCCGGAGTGACGGGCTGTGGATCGCCCC 86756 29 100.0 32 ............................. GAATGGCCCCGCACTCCGCACTGATCGCACGG 86695 29 100.0 32 ............................. CCCTCCAGGCGGCGATCGAGTCGGAGCAAGGA 86634 29 100.0 32 ............................. CCGCAGGGAACGTCGAGGGTGTCAAGGAGTGG 86573 29 96.6 32 ............................A GTTGGTCGACTGTGTCGAGGGTGGGGCAGGGC 86512 29 100.0 32 ............................. TGGGCGAGCGCTTCTTCGCCGGTGAGGCGTGT 86451 29 100.0 32 ............................. TCCTTCCTTCACGCTGGTCGCTCTGGACAGTC 86390 29 100.0 32 ............................. CTGTGAGGCGGCGGAGGGAACTGGCGCCTCTT 86329 29 100.0 32 ............................. TCGGGACTGCCGCTCCAGGAGTTCATCAAGCT 86268 29 100.0 32 ............................. CCCTGTGGACTGCCGCGCAGTGGGCGGGTGTC 86207 29 100.0 32 ............................. CCGTACCGAGAGGTCCCGATCACCGAGGACCA 86146 29 100.0 32 ............................. AACGGCAGCACGACGTCGGGACGGCCGTAGAC 86085 29 100.0 32 ............................. AATCCGACCCCTCCATAGTGTTCAGGTGCCTA 86024 29 100.0 32 ............................. CTCTTGGACCAGCGGGCCACGTCCAGGAGGGT 85963 29 100.0 32 ............................. AACGTCCCGCTCCGCGTCCGCGTCGTGAGCGC 85902 29 100.0 32 ............................. TGCAGGCGGGCGCTCGGCCGCTCGGCCGGGCC 85841 29 100.0 32 ............................. GAGAAGGGCCTCGGCTACGTGACGGGCGTGGA 85780 29 100.0 32 ............................. AGTTCCGCCAACTCACGGGCGTGCCGGGCGAG 85719 29 100.0 32 ............................. CCGAGCATCGTGGACAGACGGACCCCCACTTG 85658 29 100.0 32 ............................. AGCGCGCTGGTCAAACGCATGTGCCTGGTGTA 85597 29 100.0 32 ............................. CGGCTGAAGGGCACAGCCCTCAAGGCGGCCCT 85536 29 100.0 32 ............................. ACCGGCACCTTCTCCTCGGAGACGGCGCGGGA 85475 29 100.0 32 ............................. CCGTCGTCCAACGCGAACCAGGGCATGAAGCT 85414 29 100.0 32 ............................. GCGGCAGTTAGCCAGATCCACGGCGTCCCGCA 85353 29 96.6 32 ..............C.............. TACGCGTCTGTGCTCGCGTTCGCCGAGCGCGA 85292 29 100.0 32 ............................. TCGCAAGGGTCCCTGGCGCGGTCGGTGCGCGC 85231 29 93.1 32 ..........T...............T.. CCCACGCGGTACATGAACTACCGGCCCACTCA 85170 28 89.7 0 ............T...........A-... | ========== ====== ====== ====== ============================= ================================ ================== 31 29 99.2 32 GTGCTCTCCGCGCGAGCGGAGGTGGTCCG # Left flank : GTCGACCGGTATGGGCATCTTCTGGACTCTGCGGACGATGAGGTGGTGGCGGCTGTGGAATGGGCGATGAGTCCTGCGGGGGCGTCGTCGACTGCGAGGGCGTAGGTTCTGGTCGGCCTGCCGTGGCCTTGATTCCCTGAGCGCTGCTCCGGGGCATGAGGCAGCCATGGCCGGGCGGGTTGCTCGCCTCGCCGCTGCGTGTTCGGTCGCGGAGGATGCAGAGGCGAGACCACAAGTGGTGATTCGGACACGAGTACGTCCACTCGTGCGGAGAGCGCCCCGTGTGGGACACCGTCGCGCTTCGCTATGGCGTCAGTGACGGCAGCCGTCACTGACAACGGGCGGCCTGTGTCAGCCCAAACGCGCTCTCAGCCCCTGCTCGACGACCATAGAATTCCGCTATGTCTGCCCAGCATCTGACGGATCGACAAGGTCGGGTCGTACCGCGCGACCATGTCAAAGAACTGGCAAAGTCGCCGTAACGTGCCAGGTCGGGGAGG # Right flank : CGCTCCAGCTGCGGGACCTCCGCCGCCGCCGCAGCGGCCGCCCGGCCATCCGCATCCACTGTGCGTGGAAGCGCGAGGAGGATGGCAAGGCATGGATAGGCGCCCCTGAGACGAGGAAGAGCCGGCCGCGCGGGCGTCGTCACCGAGGCGTTCCGGCAGAAGCTCAATCGTAGGGCGCAGGGGAAAGCTCGGACGAGCTGTTGTTCACCGGTCCGGAGGGCAACCGATGGGATGCCAGAACGTTCCGTAGGCTGCGCTGGGTGCCCGGCGCACGCCCCTCCTGCCGGGCGTCCCTCTTCCACAGCCGCGTTCAGAACAGCCAGCGCTCCGCGCCCACCCCACGCCAGTCGATCAGCGGTGACTCGACGGCCTCGTCCGCCTCCAGCTCCAGGCCAGCGCGGCGCAGGAACTCAACGAGGTCACCGAGGTTGTACGCCAGCCCGAGGATCTCGCCGTCTACGCGCACACGACGGCCGCCCGTGGGGGACGGCGGGTACACA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTCCGCGCGAGCGGAGGTGGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCTCCGCGCGAGCGGAGGTGGTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.10,-11.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [20.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 4085514-4085970 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP021748.1 Streptomyces alboflavus strain MDJK44 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4085514 29 100.0 32 ............................. TCCGCCGACCCGTCTTGGTTGATGCTCCAACC 4085575 29 100.0 32 ............................. AACGCCTTCATCTGCTCGCGGCGCTCCTCGGC 4085636 29 100.0 32 ............................. AACGCCTTCATCTGCTCGCGGCGCTCCTCGGC 4085697 29 100.0 32 ............................. CAGGCGGCGCCGAGAGCGGCGGCGGCCGGGGC 4085758 29 96.6 32 .................A........... TGCTCGGCAGTGGTGCCGCGGGCCACGCGGAT 4085819 29 100.0 32 ............................. GCCAGCGACACGAGACCGGACCCCACACCCAC 4085880 29 100.0 32 ............................. GCATGGACGGCTCCCGCATCGAGTCGACCGTC 4085941 29 75.9 0 ....C.........C.G.A...CA.C... | A [4085959] ========== ====== ====== ====== ============================= ================================ ================== 8 29 96.6 32 GTGGTCCCCGCGCGTGCGGGGGTGGTCCC # Left flank : TCCCGGGAACCTGTGCTCCACCGCGCGTCTGCGCGCGCTGCTCACGCTCGCCGAGGCGATGAAGGCGACCGAGTCATGACGGTCACCGACGGCGCGACAGCGCATGCGGACGAGCTGTACCGGATCCAACTCCGCCACCTCGACGACTGCCCGACCTGCCGCAAGGGCGTCGAGTGCAGCCAGGGTGTCCGGCTGCGCCGGGCCGTGCGCGCAGCGCGGCTTGCCGCCGACAAGGGACGTCCCCGGTGGACATGACCGATGCGGCCGAGGCCGTCCGGGCCTTCCTCATGCCCGCTGCGGATCCTCTCACCATCGAGCAACGCTAGGCATAGAAATAGGGCTGCCTGAGCTGAAATGCTTCGACAATTGGTCTTGGCCAGCTGGCGCGTACCCAATGCGCGCAAGATGCGTGAACTTGTGACTTCAGGAGCGAAATGCCGGAATCGAAAGAAGTGAAGAGAATCAGGCTAGCCGCCGCATAAAGCCGCAGGTCGCGGCCT # Right flank : CGCCACCAAACAGATCCTGCAAAGCAAGCTGCCAGGATGGACGAATGCCAGCGAAACCCGGGGACCCCCCAGCTCCCGTCCACGACGACCTCCTAGCCGCCAAAGCCCTCCTCTACGGCCCCCTCGGCCTCACCTGCTCCCAGCCGGTGCCCGAGGCAGAGAGCGCCGAGTACGGAGCGCACTCCTTCACGTTGGACGGGCTCGCCGTGCGGTTCCGGGTCGCCAAGACGACGCCCACCAAAGTCGGCCAGTTCGTCACCGTGTGGCAGCGGTCCGAGGCCGGGCCCATCCGGCCCTTCGACGACGGCGACCCCGTCGATCTGTTCGTCGTCAGCAGTCGGGACGGCGCGCACTTCGGGCAGTTCGTGTTCCCCCGGGACGTGCTGCGCGAGCGCGGCATCGTGTCCAAGGGCGGTGTGGGCGGGAAGCGGGCCTTCCGGGTCTACCCGCCGTGGGTCACCACCGCCAGCCGCCAGGCGGAGCGCACTCAGGGCTGGCAG # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCGTGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCGTGCGGGGTTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 4090595-4091297 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP021748.1 Streptomyces alboflavus strain MDJK44 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== =================================== ================== 4090595 27 88.9 32 C...........C.........A.... GTCTTGAGCCGCGGCTCGTCGGCCAGGATGTT GGT [4090607] 4090657 27 92.6 32 ............C......C....... GGCCGTATCCAGGTCCGTGCCAACCCGGACGA T,CT [4090668,4090671] 4090719 27 88.9 32 ............C.....A....C... AGGTGCCACTTCTTGTCCGGCGGGCAGGTGGC GT [4090730] 4090780 27 100.0 32 ........................... GTTAAGGACTTCGTCAAGGGGTTGATCCCGGG CA [4090788] 4090841 27 88.9 32 .C..........C.............G ATGACGCCCTTCGAGATGCTGGGCCGGATCGG T,CT [4090851,4090854] 4090903 27 100.0 32 ........................... CCATTGCCGTAGTGCCCGACATAACACTCGGC GT [4090913] 4090964 27 92.6 32 ......................T...A CCCAACAAGCCGAAGGGCACCGCGTGGGAGTA CA [4090972] 4091025 27 81.5 32 ...........AC..A..C...C.... CGGGCAGTTCGCCGAGCAGGCCTCCGCACGAG TG [4091031] 4091086 27 88.9 35 ............C.........A...A GAGTCGTCGGTGTGCAGCACCCCCGGCCGCAGAAG 4091148 27 88.9 32 ............C.........A...G GCCGGTAAGGGCACCAACCGCACGGCCTGCGT 4091207 27 85.2 32 ........T...C..A.......C... GATCCGTGCAACGCCTGCACGGAGATCAACGT AAC [4091217] 4091269 27 85.2 0 A..........CC..........C... | CA [4091276] ========== ====== ====== ====== =========================== =================================== ================== 12 27 90.1 32 GTGGTCCCCGCGTGCGGGGGTGGTCCC # Left flank : GCGGGAGTTCATCGGGCGGCACAACGGCCTGCCGGACGTGGTCCACGACCTGGCCTCCAGCCGGGCCTACCTCCAGGCGTACGCCGACAAGGCCGCCGCCGACACCGGCCGGATCTGCGGCATCCACCTGGACGGCGAGCTGGTCGGCGCGGTCATCCTGCGCACCATGGACGTGGCCCACGGCACCGCCGAGGCGGGCTGCTGGCTGGAGCCCGCGGCGGCCGGCAAGGGCCTGGTGACCCGGGCCGCCCGCACCCTCATCGACTGGGCCGTCGAGCACCGCGGCATCCACCGCGTGGACTGGTGGGTCTCCTCGGCCAACGCCCCCAGCATCGCCGTCGCCCGCCGCCTCGGCATGACCCGCGACGGCGTCCTCCGGGAGAGCCATCTGTACCGGGGGCAGCGGCACGACGAGGAGATCTGGTCGGTCCTCGCCCCGGAGTGGCGGGCGGCGAAGTCGGCGGCGGCGTCGGCGGGTTGAGCCCCGGGGCCGGGTTCCC # Right flank : CCGGCTCTGCACCTCCACGCTCAAGCGCGACGAGCGGTCCCCGCACCCGCGGGGCAGCGGGCCGGGCCGGGCCGCACCGTCGACCGAGCACACAGGCGAAGTGCCGCCACACACACCGAGCCAAGCCCGGCGACCTCCCCGGGACGGGGCCTCAGCACCGCCGCTCCGACCCCGGCCTCTCCGCCTCCACCACGCCGTCCACCTCGCCCTCGCCCCCGCCCTCGACCTCGACCGCCACCTTCGCCGCCACCGAACCCGCGGCGCCACCCCCGAAGCCGCCGCGAGCCCCCCACCGCCCACCGGCCCCGGCCGCACCTCCGCCAACGTCCCCACCAGCGTCAGGACCACCGTCAACGCGACCCCCGCCAGGATCGCCGTCGACGGAGTCGTGACGCTGAGGAGGGCCCCGGCCATGGACCCGCTGACGGCGTACCCCGCCCCCACCGCCGCGTACATCAGTGAATAGCCCGCCGCGAGCGCGCTCGGGGGCAGGACCTCGC # Questionable array : NO Score: 5.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.50, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.36, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGTGCGGGGGTGGTCCC # Alternate repeat : GTGGTCCCCGCGTGCGGGGGTGGTCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCATGCGGGGGTGGTCCC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.20,-8.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [14-19] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [25.0-21.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 5524518-5525002 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP021748.1 Streptomyces alboflavus strain MDJK44 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================================================================================================================================================================= ================== 5524518 29 72.4 183 .GA..T.TT...........CT...A... GGACGCGGTGGACCTGTCCGACCCGGTGTTGATCGAGTGGCGCGGGGGTGGGACGGGTGAGTGGGGGCTAGAGGCGGGTGGGTGATGCTGCGCGCATGCTGAAGGTGTCGGAGAGGAATGTCCGTTTCTCTGCAAGTGGTCGAAACTCGCGGTTCGCTCGGCTAACGTGCCTGGTCAGTTCCT C [5524530] 5524731 29 100.0 32 ............................. GAGAAGCCCGTCCCGCTGATGGCCGACCTGAT 5524792 29 100.0 32 ............................. TCGTGATCCCGCCGACGGGCTCCAGCTCAGCC 5524853 29 100.0 32 ............................. AACGGCATCCAGGCGTCCGGCGACAGCACGAT 5524914 29 100.0 32 ............................. CACGGCTACCCGCCGTACCGCTACATTGCGGT 5524975 28 86.2 0 ...........A.....-......T...T | ========== ====== ====== ====== ============================= ======================================================================================================================================================================================= ================== 6 29 93.1 62 GTGGTCCCCGCGCGTGCGGGGGTGGTCCC # Left flank : ACTACCCGAAGACGCTCAAGGAGGTCTACGGCGGCTACTACACGCTCGGCCGCGCCTTCGTGAAGCTCATCGGCAACCCGAAGGTCATGAAGATCGCCACCCAGCGGGGCCTCACGCACCCGATGCTGATGAAGTTCACCCTGAAGATGCTGGCGAACCTCACGGACCCGCGGGGCGGCGACGCGATGGACCGCATCATCAACGGCCTCAGCAAGGTAGCTCCGCGTTCGTGATGATTCAAGGTGGCCCCTCTCGGGCCCGCTGATTTCTCGTGGATACGCCTACGGTGCGACAGCGTCGCACCGTAGGCGTATCGCTGTCTCGTGCGGCCTTCGCGAGGCTCTCACCTCGCCGGATGCGTGTTCGGCGACGATGCATGATCCTGGATTCGTGTCTGTCCATCCGCGTGTGATCGTGCACCCGCCGTCCCCCACCGGAGGGCGGCGCGTGACGATCGGAGATCAGATAGCGGGCTTGGCGAGGGGGCCCGCAGACGTCCT # Right flank : TTCTTCAGCGGCGCCAACTCGCCCGCCAGGCCTCGGAAGTAGGCTCTGGCGGGCGGAGGACGGGTGGGCGGCGGGCTAGATGCCGCTCAGTCGTACGGCGTCACACGGTGTCCGGGGTGGTCCAGCCAGAGGACTTGTTCCTCGGGAGTGACCGTGATGCCGAATCGGGCGCGGTCGGGTTGCCCCCAGGTCACCCATTGCAGGTAGGCATCGGACACCTGCGCCCACAGGTTGCGTTGGCCCCACCAGGTGACGGTGTAGGCGTCTTGCCCGGCGGAGTAGTCGACTGCGGCCCATGCGCCTTCGGGGGCGTCGGCTTCGGACAAGAGCAGTGAAACGTCGCCGCCGGGGTCGGTGATCACGGTCTGTGTGACGCCGGGCACGTGGGCAGCGATAGCGAGCGCTGCTCCTTCGGGGGCGTTGACGATGGTCCGCGGGTCGAGGGTTGTCGGCTCGCTGGTGGCGCCCTCTGCGTCGTGCGGTGTCCAGCCGAACGCCCG # Questionable array : NO Score: 2.90 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:-3, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCGTGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCGTGCGGGGTTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-13.20,-13.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [9-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [28.3-28.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //