Array 1 328125-332301 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRCP01000001.1 Aggregatibacter kilianii strain PN_516 NODE_1_length_484958_cov_70.9074, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 328125 32 100.0 35 ................................ TTGTATACTCTGCACTGGTCGAACGACGTCCCAGT 328192 32 100.0 34 ................................ AGGCGTTCCAACAACCAACCGGTGGTCACCTTGT 328258 32 100.0 35 ................................ CTTTATCTGTCGTTAGACTATACACTTTGGCGTGG 328325 32 100.0 35 ................................ CACCTTGCGCATCGCTTTAATGGCTTTCCACAAGT 328392 32 100.0 35 ................................ TGCATCGGGTCGGTAAAATAGATAATCGACCCCGC 328459 32 100.0 34 ................................ GTCGAAGGCACACGAGAGATGACCGCGAACAAGT 328525 32 100.0 35 ................................ TACGCCGAAGGTGATGGCTCAGCGCTGATTATTGA 328592 32 100.0 36 ................................ GTCTATTGTAGCCATTAAAACCTCAATCTAAAAAGG 328660 32 100.0 37 ................................ AGCAAAGCCAGGATCTATTTATTCAAAATTTATGACC 328729 32 100.0 35 ................................ TTTACAAATTCTAATTTCCCAATAGCAGCATATTG 328796 32 100.0 35 ................................ ATCGCAAAGTTGTTGAAGCCTTCAATAATTTCAAG 328863 32 100.0 33 ................................ CGGATACCAAATAAAATAATAAAAATAAAATGC 328928 32 100.0 33 ................................ TGGTTCTGTGGTTAGGGTTGATGGGAATCCTAG 328993 32 100.0 35 ................................ TCCACCTGCTGATAATGGAGGTTTTGACACTTCAA 329060 32 100.0 34 ................................ CTATCGTAAGCCAGTCAATATGAAAATTCATTTT 329126 32 100.0 34 ................................ CCTTTACCATCACCGGAAGATGAAGAACCATTGC 329192 32 100.0 35 ................................ TTTACCTAATTTATCAATGATATAGCCTGTTATTG 329259 32 100.0 34 ................................ GATATTTTGAGTAACTATGCCGTCACTTGTCGTT 329325 32 100.0 33 ................................ GGATTATGTTACAATTCGTAGCGCGGTAAAATC 329390 32 100.0 33 ................................ ACTATCCCCATCTTTTACTATATTAGGATTTTG 329455 32 100.0 33 ................................ TCGATGAAATTTAAAGACTTGAGCGAAGCTGAA 329520 32 100.0 35 ................................ AAGATCGCCCAAGCGATCCGGTATGGACTTACACA 329587 32 100.0 36 ................................ TACCGCTGGTGGAAGATTGTTTAGCAATGCTCTTGG 329655 32 100.0 36 ................................ TACGGTGATTTTGGCATCTGTCACGTTATCCCAATC 329723 32 100.0 35 ................................ CACACAATTTTGCGTTTTTCCACTTCCGTTGCTGT 329790 32 100.0 35 ................................ TTTTGCTGCGGGTTATGCAGACGTTGCCGGAAGCA 329857 32 100.0 36 ................................ ATTAAAGACCGCATAGAAACAACTTTTTTGATGTCC 329925 32 100.0 35 ................................ ACAATAAGAGAGACCCTAGGCAATGCCTAGGGTTT 329992 32 100.0 36 ................................ AAAGGGCATCGGTTTAATGAATCAACGTGGCGACTT 330060 32 100.0 34 ................................ GCGCGGATAAACAAGCACCATTACAGACTTACCT 330126 32 100.0 35 ................................ CAACCATGCCAAAGTCAAAAATAGAACGAATCACG 330193 32 100.0 35 ................................ TAAGCCACGCAAGCGCACCATCATTTCCTGACGGC 330260 32 100.0 34 ................................ TCCCTATATTAGCCCGCTTTAGCGGGCTTTTTTT 330326 32 100.0 35 ................................ AGAATCGGCGAATTGTGCGGCAGAATATTTATGCT 330393 32 100.0 35 ................................ CCCAAGTACGTGATCGGGAAATAATCGTTGTTTAT 330460 32 100.0 38 ................................ GACTATGACCGCGTCCGAACAGCTCGAAGCCATGAAAG 330530 32 100.0 36 ................................ ATTGCTCGCTTAAAATTATCAACGCGCAAAAAATAA 330598 32 100.0 35 ................................ TTGGAACCAGGGTTCGATTAAGTCATTTACGGCGG 330665 32 100.0 36 ................................ TAGTATTGGAAATGGTAAAGGTGAAGGTGAAGGTGA 330733 32 100.0 35 ................................ ACAATCTCCGGCGGACGCAATTCAATGTGAAATTT 330800 32 100.0 33 ................................ TCGGAGTTTATAGCCCCGTGAATATGGGTCTAA 330865 32 100.0 36 ................................ TTTGTATAGCCCGATCCCTTCTAACGGGTTCCCGCT 330933 32 100.0 35 ................................ AGAATCGGCGAATTGTGCGGCAGAATATTTGTGCT 331000 32 100.0 34 ................................ TGCAATTAAGCTGTCTGATAATGATAGTTTTGAT 331066 32 100.0 36 ................................ CGCTCGTTGCGCGGATAAAAGTGCGGCCTGTTTTTG 331134 32 100.0 34 ................................ CATTTAGTGCTGAGTGTTCTCAACTTGCCACTCG 331200 32 100.0 35 ................................ CATATAATCCAAGCTAACATACCGCTGAAAATCAG 331267 32 100.0 34 ................................ AATAAGGAGGCTTGACATGAGCAAAATCATCGAA 331333 32 100.0 33 ................................ AGCAGGGAAGAAATCACGCTTAGCCCACGTTCC 331398 32 100.0 35 ................................ GGCGTAAGTGTCAAATTTAGAATCACTTGTCATGA 331465 32 100.0 35 ................................ ATATAAAATAACGGAGGCACAACAATGACATTTAA 331532 32 100.0 37 ................................ TGGCCCCCTTTGATTGAATTGCATTAAGTAGCTCCAA 331601 32 100.0 35 ................................ TAAACAAAAATAGGAGAAACATAATGAATCAAGAA 331668 32 100.0 37 ................................ TGGCCCCCTTTGATTGAATTGCATTAAGTAGCTCCAA 331737 32 100.0 36 ................................ AAGTATTGAAATTATGCCGAACTTTCGCAATAGCGG 331805 32 100.0 34 ................................ GTTCGTCTCGCGGTCTGAACCCGGTGCGGTCAAC 331871 32 100.0 35 ................................ TCATCAATAAGACGTTGTGCATCTGAGAACAAGGG 331938 32 100.0 34 ................................ GGGTGTAACAGAACGCCCCGAACTTCTTCGAGCG 332004 32 90.6 35 ..........T..G.T................ GCCAAAGGTGACCGTGGCAAGGCACATGAAATCGC 332071 32 90.6 34 ..........T..G.T................ CAGTATTTAAGTTAAGGTGTTTAAATTTTATAAA 332137 32 93.8 35 C......T........................ AGGGTACCACACCACCCCGCCGTGCCAGCCTTTAT 332204 32 93.8 34 ..........T..A.................. TCAAAGTAGATCACAAAGGTGGTGAGCATACCGC 332270 32 96.9 0 .......................A........ | ========== ====== ====== ====== ================================ ====================================== ================== 63 32 99.5 35 GCAGCCGCCTCCGCGCGGCTGTGTGTTGAAAC # Left flank : TTGATGAGATAAACCATGTTAATGCTGATTACTTATGATATTTCTTTTGACGATCCAAACGGGCAAGCGCGATTGCGTCATATCGCAAAACATTGCTTAGATTACGGCGTACGCGCGCAATATTCGGTATTTGAATGTGATGTCACGCCTGACCAATGGGTCATGTTGAAAAACAAACTGTTGGAGACCTACGACCCTACATGTGACAGCCTGCGTTTTTACCATTTAGGCAGTAAGTGGCGCAATAAAGTGGAGCATCATGGGGCAAAAGGGGCAGTGGATGTATTTAAAGACGTGCTTGTCATTTAGTTCGCTAACCTGTTGCTCTCATTAAAACCCTGATGGGATAGCGATCTTTATTTTCTTTAACAATTTGGATAAGTTAATTTATTTGTATAACGGCGGTATGGCCGTTATGCTTACTAAACTCCTTATCATAAAATCAGTTAGCGAAATACAGTGTTTAATCTGCTGATTTTTCTTGCTTTTTTAGCTAGGGA # Right flank : CTAACGCTTATATATCAATAAGATCAAGTAAGATCGCAGCCACCTTTGGGTGAGTATATATTTTGTCTTTACGAAAAATAAGTGATGTATAAGTTTCAAGCTTTTCTGCAAAAACGTCTGGAAAATCCACCGCACTTTTCTTTCATAAAAATAAAAAGCTGAACCTCTTTCGAGATTCAGCTTTTCTTTTTGGGTTAGATCATTTTAACCGCTCTTTTTATTTATCTACGCTGAAATATTGTTACATTTTCGGAATTTCAACGCCTGAAGAGAGCAGGTCTTGAATATCCGATTTCAGTACATCAGCTTTTGGCCCATAAATGGCTTGAATGCCAGTGCCTTTGACGATAAAACCCATTGCGCCTGCTTGTTTCCAAGCCGCTGCATCGCCCACTAATTCAGGATTATGCACAGTGATACGTAAACGGGTCATACAAGCATCTACCTCGGCAATATTGTTTCGTCCGCCAAGAAGATTGATGATTTGTACCACTTGCGCA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCCGCCTCCGCGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCAGCCGCCTCCGCGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-4.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //