Array 1 953239-952478 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP020114.1 Nodularia spumigena UHCC 0039 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 953238 36 100.0 40 .................................... GGTTTTGTACTTGAAGAAAAAGATAACCCTATTCAAGTAG 953162 36 100.0 36 .................................... TCTACAAAAAACTAAAACATATACTGCGGTAGAAGG 953090 36 100.0 39 .................................... TAAACCTTAGATTGAGATATGTATTATGTCTTCTCTTAA 953015 36 100.0 36 .................................... CAAGGTTATGGAGCGATAAACCCATGAAGTTGATGC 952943 36 100.0 37 .................................... ATTGGCGGTGGGTGAGTATTACCTTGCTTTCCCTCTG 952870 36 100.0 32 .................................... GCTTTTCGGAACAAAATCAAACGCCATAGCAA 952802 36 100.0 36 .................................... CCTCCATCCAAATGGAATGACAACCTGCTACATAGA 952730 36 100.0 32 .................................... GATTACCCTTAAGCGTGTTTTTCGCTTATCGG 952662 36 100.0 39 .................................... CACTTTGATGGGTGTTTGGCTTACTTGGGTTGATGGAAA 952587 36 100.0 38 .................................... GTGTTTTGTCTTTCTGGTTTTGGGAATTATTCCCTATC 952513 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================== ================== 11 36 100.0 37 GTTTCCATCCCCGTTAGGGGAAGAGGTTATGGAAAG # Left flank : TATCCAAACCAGCAAAATCCCAGCTTGAAGATAATAAGTAGCTTTTTCAATCATGTCTCCAAAAGTTTGACCAGGAGAAATAATTTCGATAACTAATTCTGGGATAACAGGACAAGCTTCATCTTTAAGCCAGTCAGCAGGAAGACGGTTATAAGAAATATATGTTAAATCAGGGACGGGTAGCCAATTTTCTTGATTTCTTGTTAATTTTATCCCCCATTCCACTACAACGCGACCTTTTTCTTGCGCCCATGTGGATAATAGGATAAATAATGCTCCTGTGGTTGCACCATGAAAAAATTTAGGAGACATTTGCTCATTTTTATATTTCGGTACAGCTTCACCGTCAACAAACTCATAAGCAAGTTCACTTTCGGGAAGTGCAAGAAATTCTTCGAGAGTGAGTTTGGTTTTTAGTTGAGTCATGGTTAGTTTTGGTGGGTTTAATATTCCCGACTTCTATGATAACTAAAGTTCGGTTTAAACCCAGATTTCTCACT # Right flank : AGTTCACTTCTGGAAGGCTTGCTAGGAGAGGGTTTGAGATACCCGAATCCACACCAGTTTTTGCAGTGTCAATAAGTCCCAACAAATTCTCAATAACTTGTGAACTTTACAGGCTGGAAAGCTTACTGTGTAAGCAATCGACACCAGTTAACGAAATTATGCGGTTTTCAAGGTTCGGGGGAGTGGTGTCGATGAGTTTTAACTCACCTCATAAAATGTAAAATATATAACCGGAAATTGTCAAGAGATTATAGCAATTTCTATTCAAGTGAGGTACAAGCAGTAATAATTAAACGCAGATGGACGCAGATAAACGCGGATAGTTTTGTACTTGATTTTTCTTCCTACCTTTGCGCCTTTGCGCCTAACGTACTTCGTACTTCGCTTCGCTAATGCGTGAACCTAATTCCTCACGCTTCTGCCTCGGACAAGGCAAAATAAAGATAGTATGAGTGCCAAACTTCCATGAGTTATTGCCTAAATTCCCATTGTCTCCAACC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATCCCCGTTAGGGGAAGAGGTTATGGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [9,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-9.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [51.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA // Array 2 4037322-4035454 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP020114.1 Nodularia spumigena UHCC 0039 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================== ================== 4037321 37 100.0 37 ..................................... GTTGACATATCTTCTTGTAAACAGAAGCGGAGTCCTA 4037247 37 100.0 37 ..................................... AATTTTATATCGTCCTGCAAAAAGTCCTTGACCTTTG 4037173 37 100.0 40 ..................................... GTTGTAGCCAAAATAGAGGAAAATTTGAAAGCTTAATATG 4037096 37 100.0 38 ..................................... ACGCCATCAGCTTCCAATACTGTTTCTAATTTTGCTTG 4037021 37 100.0 39 ..................................... CCAGTTATACCAAACTCTTCAAAGCTTTCTGTAACATTC 4036945 37 100.0 39 ..................................... GCTACGCAGACATAATTGGAAAGAAGTCGCCATCCCTTT 4036869 37 100.0 39 ..................................... ATCAGAAGGCACTTTAACTGTAATCCTAGATGAGGTGAT 4036793 37 100.0 40 ..................................... TGGTTTTCTTTTCTGGCTAACAAAGCAGCTTGCATAAAGC 4036716 37 100.0 41 ..................................... ATAAATAAAAGCATTTTCTCTTAAAGGTGTAAACCCTAATT 4036638 37 100.0 42 ..................................... CAGGATGACCTAAACCTTGTCCAGAACCATCTTCAACTAATG 4036559 37 100.0 39 ..................................... CTTGTGAGCGATCTCACTCAGCTATCCAACAGTTATCAG 4036483 37 100.0 38 ..................................... ATATTGTCTTTGGATATTTAAATCCAATTGTTTTTTCT 4036408 37 100.0 42 ..................................... AATGCCCAGTTATTACAAGATATTAAGGGTGTCTCTTGTATC 4036329 37 100.0 37 ..................................... GGTTGAGGATAAATACTACCCTCAGACCACTTTAGAT 4036255 37 100.0 39 ..................................... CCTTTCGTGGCTTTAATCAGTTCGTAACCCATAACGGAA 4036179 37 100.0 46 ..................................... TCCTTAGTGTGTTTAACCGTGTCAAGCTGTGCTACAGCGATTTGCT 4036096 37 100.0 38 ..................................... ATTGTATGAGAAAACTGAGGGGGTTAACCCCCTCAGTT 4036021 37 100.0 46 ..................................... TGGGAGGGTATTAAAAAACTGTTTGACCTTTTTAAGGCTGAGTTTA 4035938 37 100.0 39 ..................................... CTTGCCATTAAAATGCTCCCACACCATCTTGGATAATGA 4035862 37 100.0 38 ..................................... TTGGCTTTTAATTTGTACTCTCTAATAAATTGAGCAAC 4035787 37 100.0 38 ..................................... GTTCCTATTAGGGCTTCTAAGCATCCCTACTAAACTTC 4035712 37 100.0 37 ..................................... TAGATTGTTGAATCCGGCTTTGCTTTGGGGCGATCGC 4035638 37 100.0 39 ..................................... TCGTCCACTTTCGTCAACCTCCGTTTTTTGGTGCGTTTA 4035562 37 100.0 36 ..................................... GAATACACCTAAACTTCCCTGTGAAGCTTTCTTGAG 4035489 36 89.2 0 .............................-.AA...A | ========== ====== ====== ====== ===================================== ============================================== ================== 25 37 99.6 39 GTTTTTCATAACCATTTCCCCGCAAGGGGACGGAAAC # Left flank : TTAGATGAAAAGGCCTTGACACAACAGTTAGAAAATCGCTGGTTAAAGGTAATTAAAGTCAGTGAGGATAATTTGCGGATTTACCCGTTGGATAGTACAGCCAAGCAGCAAACGCGAGTCTATGGAAGTTCACCACCTTATGAACCGCCGGATTATTTAATTTTGTAAAGTTCAGTGTCTGAATTTTGCGGGAATACAAGTGCTGAAAGTGTTGTTTTTGCAAGCTTTCGGCACTATGTTACGGTATGTAAAGCAGTGGGAAATTTTGTCGCCGGGAGGTGGGAGGAATTAGATTGAGTAACGGTTTGTGAATAAGAGTAAATTTGTGGTTTTTGACTTGACTCGTTGGTGTTTTGCTGCTAAATTAAATATATCAGCAGATTATGCTGAATTTAATTCTTCAGTTATACTACGGTTAAGCTTTGATACTTATCGTTTTGCGTAGTCCGGCGCAACAGCACCTTGAAAACTAAATATGACAACGGTTTCCACTTCATGGG # Right flank : GACAGTAGCACCTTGAGAATTGCGTTCCCAGCTAGAGGCTAAGAAACGAGATTGTCAAACCGGATTGCTATATAATATTTATAGTGAGTAGGATACAAATAAAAATGTCAGAAAAAACTTTTGATATTGCTTACTTATCTGAAAATTTGCTTGATTTATTATCAGATATTCAAAATCATGTGGAAATTACGCTAACTCGTCAGGGCGTTCCTTGGGCAAAAGTTTTACCTCTTGAGCCAGAAGAGTCTACAGTTGAAAAAGCGGGTTTAAATCATGGCTCAATGGCGATGAATAGTGAAGAAGTCTTAGAACCAAGAGTTCCAGGGTTTTGGCAAGGAAAAGTTAAGATTTCTGAGGATTTTGATGACACTTCAGAAGAGGTGATTGCTGCTTTTTATGGTGAAGAGTAATGAGTTTTTTATTAGATACTCATATTCTGTTATGGTTTTTATAAAATGATTCTAAGTTGTCAAATCAGGTACGCGAAGTAATTATTAATC # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTCATAACCATTTCCCCGCAAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 3 4038998-4039178 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP020114.1 Nodularia spumigena UHCC 0039 chromosome, complete genome Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================================== ================== 4038998 30 96.7 44 .....G........................ AGATATCTTTACCCCAAGTAGTCCACTTAGAGGTGGAAGGAGAG 4039072 30 100.0 47 .............................. CTTGGAAACTGTTTCCCGTGGAAGGAGGCTTTCAACTTATTTGAGAG 4039149 30 96.7 0 ............A................. | ========== ====== ====== ====== ============================== =============================================== ================== 3 30 97.8 46 GGGGGAAAAGTTCTGGATAGATACTCTTTC # Left flank : TGGTGAAATCACTTAAACGGGAGGAATAGGAACTAATTAAATCTATGGCTTCGGCTAGTTGGCTAATTTCTCCTTTTGTCGCCCGGTTGCGACGTTGTAGCAGCACTCGTTGGTTACGAATTTTGCCTATGACCAATTTTTGAGCTATGGCCATGCCAAAGGTAGTTTCCACTGTACGATATTGAGCGAGGCGAATTATGGGGTTTGTGGCAAATTGTCCCTGGAGTCGTCCGCGAAATTGACCATCTTGGCGGAGAAATATGGTTTCTATGCCTTTGTCAAGTAGTTGGGCGATGACGACATCTGTTAGCTGTACTCCTGGTAAGACTACTACTAAGGTGATTTCGGCTATGCGGCAATTTTGAGATTTTTCTTGTTTGGTAATGGTTAAGGATTCGTTGCGGTAGCGAATCACGGTTCCGGGTTCGGTTAAATATAGTGTGGTCATTGGTGTTAAATTTGAAGAACCTCACCCCCAGCCCCTCTCCTTGGTAAGGAGA # Right flank : CCTCTAGAGAGCTATTAGAAACCCAGCCCCTCTCCTTGGTAAGGAGAGCTAATAACTGATTTTGTCCTTTTACAACACTTCTAAGCCTTAGCGCCCCAGCCCCTCTCCTTGGTAAGGAGAGGGGGGAAAAGAATGTAATTAACGTTTTTAGGATTCTGAAAAGGTCAAATATTTGTAGGTTGGGTAGAGGAACGAAACCCAACACCAAGAATCCCTGGTTTTGTTGGGTTTCTCAAGGCTTCAACCCAACCTACATTTGAAAAATTGATGAGTCAGGGAACCCAAGGCTCATCCGTTAATATTTACATTGTCGTGCTTGTGTGGAAGATGCCTCTTCTATACGGATGTCATAATAAGGGTATCCAAAAAAAAGCACATTTGTTTTTATGTCTTTATTTGTGGCGAAAAAGCTGGTAATGTACCGCAGTGGGATTGTTGCAGTGATTAATGCTGGGATTACCTGGATTATTTTGATTATTGCTCCCTTGGGATTGTTTTCT # Questionable array : NO Score: 2.56 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGGGGAAAAGTTCTGGATAGATACTCTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.80,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [50.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA //