Array 1 63929-64437 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACGET010000020.1 Pectobacterium brasiliense strain NAK:384 MNCLAIFA_20, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 63929 28 100.0 32 ............................ TGGTGCCGCCATGTTTTGAGCGGACCATACCG 63989 28 100.0 32 ............................ CGACACATCCGCCACACGCCCGTCGGCGCTGC 64049 28 100.0 32 ............................ ACACGCTGTGCGCGTTGATTGCGCAGCACTGG 64109 28 100.0 32 ............................ GTAATACTGGGATCGGATTTCGTAAACAAAAT 64169 28 100.0 32 ............................ CTACCGCGCCCTTGAAACGCTGCGTCGTATTC 64229 28 100.0 32 ............................ GTTCACCATATTTCCCTGCTAATGAAATCCGT 64289 28 96.4 32 ................A........... TGAACTAGTAATGGCGACAAAACAGATAGTCT 64349 28 96.4 33 ...........C................ ATCGATATTAATGTCTACATATTCGCGGAATGA 64410 28 89.3 0 .............C......T.A..... | ========== ====== ====== ====== ============================ ================================= ================== 9 28 98.0 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : CTGACGTTCTGTCATAAAGTCGGCGTCAGCGCGATCTTCTTGCAAAAACGAATGCCAATTGGGCTTAACAGGACGCAGCATGATGGTATCTCCCTCACGCACAATCTCCAGTTCGTTGACCCCTTCAAAGTCCATATCACGCGGCAAGCGAATGGCACGGTTGTTACCGTTTTTAAATACCGAAACAATACGCATGAGCTCCTCCTCCTTAAAAAATACAGAAATTCAGCCAGCGACTTACCGTTTATTATTGCTGGCTAAAACATAGGCTAAGTATAGATATTAATCACTCGGTTGTATATCCATAGCATATGCAGATACCTGACATAGGCCTATCGTCAATAAATAAAATCTTTGCCATACGTTCATGACCCTTTTTTTACGCATCGTCGTAACTCATTGATTTTAAATTTAGACTATCAGCTCTGATAAAAAATGGTTCTTCGGGAAAAATGGTTTATTTCCTTTTAAAATTAGGCAACTACCGTAAAATATGAACG # Right flank : AATAAAGCTCTCCTAAGGTCAGGAATAAAAAACTCATAGGCAACGCGGCCTAAAAAGCTGGTAGTCTGTTTGGCCGACTGCCTGATACTGTTTAGGAAACGCGATGTACCACATTGATGACTTCGATCTGAAAATCCTGACGCTGCTACAGACGAACGGCCGCCTGACCAATCAGGAACTGAGCGATCTGGTTGGGCTTTCCGCCTCGCAGTGTTCCCGCCGCCGCATCGCACTGGAACAGGCACAGCTGATTCTCGGCTATCATGCCCGTCTGTCGCCGAACGCCGTCGGGCTGGAATGTCTGGGGTTGATTGAGGTGCGACTGATCAATCACACCAGCGAATACGTTGAGCGTTTTCACCAGATGCTGGGGGAAGTGGATGCCATCATCGACGCCTATAAAACCACGGGTGATGCCGATTACCTGTTAAAAGTCGCCGTGGCAGATCTGCCCGGACTCAGCACGCTGATTAGCCAAATTCTGTCGCAGAACAAGAGCG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 71831-70781 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACGET010000020.1 Pectobacterium brasiliense strain NAK:384 MNCLAIFA_20, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 71830 28 100.0 32 ............................ CTTGCCTGACGGGTTGCGGCACGCACTCGAAA 71770 28 100.0 32 ............................ GTCTGCTGCAAACAGACTGGCAAACATACCCG 71710 28 100.0 32 ............................ AGTCATAATACCCATGCGGAGCAGAGGAATTT 71650 28 100.0 32 ............................ AGCGCTCGTTCCATCTCATCAATCGCCGGGTC 71590 28 100.0 32 ............................ ATGAGCATGACATACACCCGCAAATCGGCGAA 71530 28 100.0 32 ............................ TGAGAAATACTTCACTGAGGTTGAAGGTATGG 71470 28 100.0 32 ............................ ACGCATATAGTCTTTCTGCGTGAGTGGGAAAA 71410 28 100.0 32 ............................ GTGAAAAAGTCGGTTTTCGTCTGGCTGATACT 71350 28 100.0 32 ............................ TACCTGAGGATTGTCAGTCCGAAATCCGGTAT 71290 28 100.0 32 ............................ AGGAGCAGTGATACCAGTTATCAATGAAGGAT 71230 28 100.0 33 ............................ AGCCTGGCCAGCATTCAACTTGAAAAAACGGAT 71169 28 96.4 32 ...........C................ TGGAATAAATACGTCGCCGATGCCAACTTTAC 71109 28 96.4 32 ...........C................ ACGCCAGGCAACTAGCGCAACTTCCACCTGAT 71049 28 96.4 32 ...........C................ ATGTTGAGGGCGTGCAACGCGTTGATTTGGAA 70989 28 96.4 32 ...........C................ TCCTTTTCCTGATCCTTTCGTTCATCGCGTGA 70929 28 96.4 33 ...........C................ GATATGCCGATGATCCGATTTAAAACGATTAGT 70868 28 96.4 32 ...........C................ ACAGGCTCTTTCGCCGCCCTGTCATAAGCCGC 70808 28 82.1 0 .............C......T...TCC. | ========== ====== ====== ====== ============================ ================================= ================== 18 28 97.8 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : TGCGTGACGGAGGTGCCGGTTCCCAACATCACCACGCTGGTATTGGCGATGGGAATATTCCAGTACAGAGACTGGTTTCCTTCCTCCGTCACATATTCGACACGTCCACCGTTAACGAGAATGCGGCAATGCTGGAGATAATAAACATTGGCGCGTTTGGAATGCAGAATGGTTTTTAAGTCCGAAGGGCTAAAGGCGTTATCCATAATGTATTTTCTGCCGCAATCGATAATAGCTGTGACGCCAGCGAAATAAAGCGCAGGCTAATTATTTGATAAGAAAAATATAATCTTCAGAAAACTAACGAAAATCAGATTATCACAGTTGTATATGAAAAATTCTGACCGCAAAAAATATTACCCAAACACAGACCCTTTTTATTTGGCCTATTTCACAGGCTTAATAATCAATGAGTTACAGATGAGCTGAAAAAAAGGGTTTTTGCAGGGAAAACGGCAATTGCTGCTAATAAAACAAACCGTTAGAGTGATCGGGCTACT # Right flank : CGCCTTAAGTGTCATTATCTGGCTATTATCGAGGTAGCACTATCGGCAGAGTTTGATACGTTATCGTCTTTAAATAACGTATTTTTGATTCCCCTTTCTCGTAACATTTTTAAGTAACGGGTTTCTTTGTGGGGAATGGAAAATTGCGGATTGGGCATTATTAACATTTAAAAACCATCATTTTTCCGTTAAAGTGCCTTTACAGGGAAATAGTGCGTTGACTTAAGTAAAATTCAAAGGAATGAGATGCTGTGAAATACGATCCGGTTTTAAAAACGCTTGTGGATGATGACTATCGGCTAGAAGATCATCTTGATTTTAAAAAGCAGCATGCTGATATTAACTATCAGAAATTACATGCTCAACTCAATGAAATAAATAACGATAACATTCATGCCATATTGACTGCGCAGGAAGCGACGTATTTTTTACAGACGTTATGCACCCCAAATCCCAATCAATCGTGGAAAACGGCCATATTTGGCTGTACCGATCCTGTT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 80777-81404 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACGET010000020.1 Pectobacterium brasiliense strain NAK:384 MNCLAIFA_20, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 80777 28 96.4 32 .................T.......... CGGCGCTGAAAGCCTATAAAGGACGCCAGAGC 80837 28 96.4 32 .................T.......... TTGACTGGACGCAGCGAATTAAAGAAGACGGT 80897 28 96.4 32 .................T.......... CGCCGCGAAATGTCACCAACATAAACCATAAC 80957 28 100.0 32 ............................ AATGGAAAATTGCTGCGATGTCGGCCATCACC 81017 28 100.0 32 ............................ TGATTAGAAAACGTCTGTACCATCTGGAAAAA 81077 28 100.0 31 ............................ TACAGAAAGGCTTCATTAGCCGGCCGCTGTT A [81102] 81137 28 92.9 32 .......A...C................ AGCAGTTGTAGAGAGCTGGAGGGTGGTTGCAT 81197 28 96.4 32 ...........C................ TGCCACCGGACCAGATGAAGGGGACCGACAGT 81257 28 92.9 32 ........T..C................ CGTGGGGTGCCACTTTGTTTGATGCTCCAGAC 81317 28 92.9 32 ...............A....T....... AGGGCGCGTGGGTGCGACTGGAAGATAAAGAG 81377 28 78.6 0 ............GC........C..TGC | ========== ====== ====== ====== ============================ ================================ ================== 11 28 94.8 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : GAGGCGCTCTCTACGTTGGAGCAAACGGCCTGGCTGAAAGGATTGCGGGATTACACGCAGGTTTCTGAATGTAAAACCGTACCTGACGGCGTGAAATTTCGCACCGTGCGCCGCGTTCAGCTCAAGAGCAGCGCAGAACGGCTACGTCGACGCTCGGTGAACAAAGGCTGGCTGACGGAGGCGGAGGCCGCAGCACGAATTCCTGATGCGGTGGAAAAACGTAGCGCACTGCCGTTTGTGCAAATTAAGAGCTTGTCCAACGGTCAGATGTTCTTCGTGTTTGTGGAACATGGCCCGCTACAGGATGCACCTATCGCCGGACGCTTTTCCTCCTACGGCCTAAGTGCAGAAGCCACCGTACCCTGGTTCTGACCCTTTTTTGGCGACCAACTGCAAGCTATTGATTTTTAATTGCGGTTGGTCGCTCTAATAAAAAAGGGTTTTCCGACAAAAAAGTCGCATTCTCTTTAACAATCTGGTGGTTAGCGTAAAAACTTAAC # Right flank : CTTGTCGGGATGCGTCGCTGGTGCGACGCATTTTGGAGGCTTATTCCCCGTGGAGGGTGACAACCAGCGAGCGATTGCCGCCGTGATTGCGGTGCTCGCACAGGTAGATGCCCTGCCAGGTGCCGATGTTCAGGCGTCCGTTGGTGATGGGGAGCGTTAGACTGTTACCCAGCAGGCTACCTTTTAGGTGCGCGGGCATGTCGTCGCTACCTTCATATGTATGGCGGTAATACGGCTCATCCTCCGGCACTAAGCGATTAAAAAAACTCTCGAAATCCTGCCGCACCGTAGGGTCGGCATTCTCGTTAATCGTTAGCGCCGCCGAGGTGTGTTTGATGAACACCTGCATCAGCCCGACGTTTATCTGGCGCAGTCCAGTAACCTGCGCCAGTATTTCGTCAGTCACCAGATGGAAGCCTCTGGCTTTCGGCTTCAGGCGGATTTCATATTGCATCCACATCGCAGTCCCCTGCTATCAGGCTTCACGTGCCAGAATCGGC # Questionable array : NO Score: 5.45 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.45, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGTATAGGTAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //