Array 1 9989-10196 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHAMP010000022.1 Vibrio metschnikovii strain M27D Scaffold22, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 9989 28 100.0 32 ............................ TGAGGAAGTTAACCGATCCAACTTTTCCAAAT 10049 28 100.0 32 ............................ TTAGCTTTCGATTTAGCGTGGTATGCGTAGCT 10109 28 100.0 32 ............................ CCGAAATTAAAAAGCATTTCGAAGCGTCTTTT 10169 28 92.9 0 .............C..........A... | ========== ====== ====== ====== ============================ ================================ ================== 4 28 98.2 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : ATGGTAAAAGTGGTTATGTTTTAAGATATTTCGCCCCCAAGATTGGTATATCAGAAGACTTAGCGACAGGTTCAGCTCAGTGTTCTCTTGCACAATATTGGTTCAGTAAGCTTGGTTTGGATTTATTGAATGTTCATCAACTTTCCAGTTCAGGTGGTTATTTTGAAGTTGAGCGAATGTCAGAAAATTTAATCACAGTGCTCGCTCAAGCTAAGTTACGGTGTAATGCAATTTAACAAACGCTTCAAGAGGGACAGCCAACGCGTGGCATTTTTATTATGCGTTGGTTTTTGTGATTACAGTGTTATGCGGTAAGTTGGTAGTAGCGTTGTCTGCCCCTTAAGCGGGCGTTAACTGGCAATGAAATTACCCATCTTTTTTCGTTGAATTTTAAGTTATTGATTTATATTAATAATAAATCGAGTGAAAAATAAAAGGTTATTTTGAGAAATTTGATGTAATTACCATTATTAACAATAGGTTACTGCTAAAGTTTCATA # Right flank : AATGGGTAATTTTGGCATTTGGGATCGGCCAGTTAACAAAGCGTTCAAGAGGGATTCGCAACGCGTAGCATTTTCGTTATGCGTTGATTTTATTGGTTTTTAGTGTAATGCGGTGAGTTGGTAGTTGCGTTACTCACCCCTTAACGCGGCGTTATGCCTATCCAGAAGAATACAAAAAGGAGATGTTATGATTAATAAGATTCTTGGTTTTTTTAGTTGGTTATTGAGTTTTTGGAAAGGTTTATCCGACGAAGATAAGGAAAAAATTGTTGATATTGTGGTTCATTCTATGACACAAATATTCAAAACATACTATCGTTCATCAAAGAAATCAGAGGGCTAAATGAAAAATTTGAAAGAGTTTCTTCGTGCATCTTCAGAGGCCTCTCATTCTCAAGAATTAGCGTTTAAAAATGCATCTACTGAAATCGCAGCTTCAGCATTATCTATTGGTTTGGTCAGTGCTGAAAGTAAAGCGGATAAATTTGCAGAAGAAGTGA # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 439425-438787 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHAMP010000001.1 Vibrio metschnikovii strain M27D Scaffold1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 439424 28 100.0 33 ............................ TAATGGAAATAATCACTGATTTACACGATGGGT 439363 28 100.0 33 ............................ CTCAAAGACAACTTACGAGTGCATATATCGAGC 439302 28 100.0 33 ............................ TGGCATCGACAATACCAAGCTGATAAGAAGCAT 439241 28 100.0 33 ............................ TGACGATTGCGCTGGGCGGATGGGAGCTTAAAG 439180 28 100.0 33 ............................ CTGACTTGATGGCCATCGGCTTATCGAAAGAGC 439119 28 100.0 33 ............................ TATAGTAGTGAACATAAATGCAGCGCGTATAAA 439058 28 96.4 33 ...........T................ CTAGGAGGCGTTGACGCCAGTGTAAACACCGTA 438997 28 100.0 33 ............................ TGCAGTAGCTTGTGTCGCTGCTGGCAAAAGCTG 438936 28 96.4 33 .....................A...... TCCGGTGTTTACCAAGTCAACTACGACAACACT 438875 28 100.0 33 ............................ TATTTTTGTGAGACTTGGATTGTGTGAATGTTC 438814 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 11 28 99.3 33 GTCTTCCCCACGCCCGTGGGGGTGTTTC # Left flank : TGGCTGTTGTCATCGATCTGTTTGCACGAAAACCGATTGGTTGGGCAATGTCGCTATCACCAGACAGCAAGCTAACTGGAAAAGCATTAACGATGGCTTTTGAATCTAGGGGAAGGCCCAAAGGGATCATGTTCCACAGTGATCAGGGTAGCCATTATACCAGTCGCTATTATCGTCAGTTGCTATGGCGTTGTCAGATTAAACAAAGCTTATCGAGGCGAGGCAATTGCTGGGATAATGCGCCGATGGAACGCTTCTTTAGAAGCCTGAAAACAGAATGGGTTCCAACGGCAGGTTATCGTAGTTTTGCAGAGGCTCAACAAGAGATCATCCGATACATTATTGGATATTACAGCCAGCTCAGGCCACATCAGTATAACGGTGGGTTAACGCCCAATGAATCTGAACGCTTGTACTGGGAAAACTCTAAAACCGTGGCCAATTTTAGTTGACCACTACAGAGTTTCTTCGAAACCCCCACGCCCTAGCAAGCTTAATGG # Right flank : CTTTCTTCGGCGTTCCTACTTACTTTTATCGCTGTCTTCTGTCACCGATTATGCAAAACTGATCCACTTAATACTCTCAGTCCGCATGGATTCCCGCCTGCGCGGGGATGACGGTTTGGCTATTGTATGGGTGGTCAATTCGATACTCATCTTGCCAGGCTGTGCCTGTCATAGCTCTTCGTTAATCGGGGCAATACAATATTTTGCGCAGATTCGACAAGAAAATGTGAGTAAAGTAACAATATGAGTCTTTCATTCATTAGACACTATTAACCATAAACTTTGTGATTGGTTGAATCTATGAAAACGTTAACTTTACCTTGTCAGCGAGACGTTGAAATAAACGCCGCAGAGCTAAACGTCACCCTTAAAGGTCATGAGCTGCATTTTTCTTATCAAGGTGACCCATCAAAACCGATCAATGATCGTTTTATTCTTGCTCGTAGTTTACTCGAAATGGATGCTAATGCGCTTGTTGTTGGCGATGGCTTTCAAATGCT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCCCGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACGCCCGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 441667-440723 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHAMP010000001.1 Vibrio metschnikovii strain M27D Scaffold1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 441666 28 100.0 33 ............................ TGGACCGTCTTCGCATCCCGTTCGTTTCCTCGA 441605 28 100.0 33 ............................ TGACCGCAAAGGCTTGGTTATACGTGGAAAGTA 441544 28 100.0 33 ............................ CTACAACATTGCCGATCTAATGAAAATATATAT 441483 28 100.0 33 ............................ TTTCGCCAATCATGGCTTGATAATCATCAGGAC 441422 28 100.0 33 ............................ TAGCAGTAGCTAACGGAGGTGGGGTGTTTGCGA 441361 28 100.0 33 ............................ TGTACGTGCGGGTTAGGCTCGCCGTTTTCATTG 441300 28 100.0 33 ............................ CCATCACCGCCATCGGAACCATCACCGCCACCG 441239 28 100.0 33 ............................ CCGACAACGCAACCAGAACCTGAGTGCTCAAGG 441178 28 100.0 33 ............................ TATGGGACAAGGAAACTTACTGGCTACGGCTAG 441117 28 100.0 33 ............................ CATTCAAGCAAGTTATTGATGATTGTGGCACAA 441056 28 100.0 33 ............................ TGAGTGCATCATCTTCACTCTGTGCTTTGTAGC 440995 28 100.0 33 ............................ CAACGACTAATGATGCCAGTGTGATCTTAGATA 440934 28 100.0 33 ............................ CACCGAGCGACACTTATCCAGCAGCATGTCGGA 440873 28 100.0 34 ............................ TCACCGCAACCCCGGCAAACTCTTCGACTTTTCG 440811 28 100.0 33 ............................ TCTGCCCATTCATAATTACGCACCTTTTGGTGA 440750 28 92.9 0 .........................G.A | ========== ====== ====== ====== ============================ ================================== ================== 16 28 99.6 33 GTCTTCCCCACGCCCGTGGGGGTGTTTC # Left flank : CTTTACAAAGAACACCTTTGTATTGATTTAGCTTTCTCGCTTACCCGAGATATGGCCGGTCACTATGACAAACATAAGGTTTCTGATGCGTTTCGAAAACGCGTTATCAGCATGAATCTGTTACAGCAAGTCTCCTCGGATATTAATGAGTTGATGGGAGGGGGAAATGCTCGTCGTACTAGCAAATGATTTGCCCCCAGCAGTTAGAGGGCGTATGAAGCTATGGTTTGTTGAACCAAGAGCCAATGTGTTTGTTTCTGGCGTAAAAGATTCAGTTGCACTGACGGTCGTTGACTATTTAATGCAGCATTGCCCTGTGGAATCTGGCTTAATGTTATTTCGCAGTATTCCAGAACCACCCGGTTATGAGATTCGCTACAAAGGTGAAGTGCGCAAACCCGTGATTCAGATTTCTGGATTACAATTGATAGTCGAAACCCTTATTTCGTCAAAATAGCAATATATGGGTTTATTTTTGCGATCTTTAACAATATATTGGT # Right flank : GTGGTACAGTAAATTTGGCCACCTAAATAGAGGTGTTAAAATGCATCTCAGAGACAAATAGGTGACTTTATGACAAATCGCACAAGACGAATTTTTAGTGCAGAGTTCAAACTTGAAGCAGCACAATTGGTAACAGAGCACGGCTATTCGGTTATCGAAGCCGCCAAAGCAATGAATGTCAGTAAATCAGCAATGGATCGCTGGGTACGACAGCTTAAGCAAGAGCAACGAGGTATACCACAGAAGGCTTCTCCGCTTACGCCTGAACAAATAGAAATTCGTGAACTCAAGAAGAGAATCGCCAACCTTGAGGAGCACAATGATATTTTAAAAAAGGCTACCGCTCTCTTGATGTCGGACTCACTGAACAATTCTCGATAATTGAGAAACTCAGGAAGAGCTTTAGCGTAAAAACCTTATGCAAGGTATTCAGTGTTCATCGTAGTAGCTACAAGTATTGGCGTAACAGAGACAAGCGAATATCGCCTGAGCAGATAGAA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCCCGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACGCCCGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1056-1865 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHAMP010000044.1 Vibrio metschnikovii strain M27D Scaffold44, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1056 28 100.0 32 ............................ TTGCGTTTAATAAGGCGCTGCCATGATTCATT 1116 28 100.0 32 ............................ TATCGTATAACGTGTACATGTCCGATAAATTT 1176 28 100.0 32 ............................ TTAAAGTTACTGATTTAGATATATCTTTAGAC 1236 28 100.0 32 ............................ TTTTCAGCCAATAGCATTCCAACCCAGTTAAT 1296 28 100.0 32 ............................ TGAGACAAAGCCGGTTTCAAAGCCGCGAGCTT 1356 28 100.0 32 ............................ TATTTGTACTTCATGACGAACCCAATCCGGAT 1416 28 100.0 33 ............................ AAGCAATAATCACGTCCGTACCTTCAACACCGA 1477 28 100.0 32 ............................ TTAATTATCGCGGCCATGGCTGCTACTGCATC 1537 28 100.0 32 ............................ TCACTCGTTCGCACTTTCCGCTCACATCACGG 1597 28 100.0 32 ............................ AGGCGAAATGCATCGATAGACGACGGCGTTAT 1657 28 100.0 32 ............................ GCCATTCAGCGCAAATTTTGGATTGGATACAA 1717 28 100.0 32 ............................ AGTCCATGGATAGCGAGGTGACAACTTTGTTT 1777 28 100.0 33 ............................ CTACGGGAGACGATCAAGCAACCCGCAACAAAA 1838 28 92.9 0 ........................A.G. | ========== ====== ====== ====== ============================ ================================= ================== 14 28 99.5 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TACCTAACGAACATTATCGTTTGGGCTCATTTAGCTGCTATTTTGATTTGGTTTACATTAATGGTTTGTTTCTCTGAGATTTATCATCAGAATCAATGGGTAAGCTTGAGCCAATTTAAAAATTAACTGTTTGTTTTTGTGCCAAAAGTTAGCTCAACTTACGTTAAGTAACTGATGTTATTTGCTATTTTTAAAGGTTGTTAGGTGTTTCAGTAGCTATCTGGAACTGAAATATAACAAACAATTCAAGCAGACCCTCAACGCGTGGCATTTTCGTTTTGCGTTGAGTTTAGTGATTACGGTGTTGTGCAGGAAGTTGGTAGTAGCGTTTCGGGCTACTTAATTGGGCGTTAACTGGCAATGAAATTACCCATATTTTTTCGTTGAATTTTAAGTTATTGATTTATATTAATAATAAATCGAGTGAAAAATAAAAGGTTATTTTGAAAAATTTGATGTAATTACCATTATTAACAATAGGTTACTGATAAAGTTTCATA # Right flank : ATATTGGTAATTTTGGCATTTGGGATCGGCCAGTTAACAAAGCGTTTAAGAGGGATTCGCAACGCGTGGCATTTTCGTTATGCGTTGATTTTATTAGTTTTTAGTGTGATGCGGTGAGTTTTTCGTTGCGTTGCTCACCCCTTAACGCGGCGTTATGCTTTATTGAACCTCAGCAAAATTAATATATAAATTTTAATGGGAAAACTCTGTCTGATTTAGAGGTTTTCCTATTCTAATTTATTGATATTATGAGTTTATTGTTCTTTTGGGTGGCTATTGAAAGTTGAACGAGGCTTTTGTGTTTTTGTCGGCTTTTGCTCTGATAAATTGTGTATGCAAAAGGTTCGATTATCGCTGAAAAGTCTCTTTCTTTGGTGTTACTGGTTCATTGATTCCACAGGCTATTTCGCTTCAGCATGTTTGGGATCTCATGAACATCTTGCTTGCTGACAGTGTTTGGTTAGTTCAAGTTTATCGATGATTTTGCGCTTTTTTCCGGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //