Array 1 8850-8700 **** Predicted by CRISPRDetect 2.4 *** >NZ_SIXH01000315.1 Streptomyces kasugaensis strain AM-2504 315, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 8849 28 82.8 32 .TC..T-C..................... GTAGGCGACTCTGCCGGGTGCGGCGTGGACAC 8789 29 100.0 32 ............................. GGCGCCCTTCCCCCACAACACGCCGAAACTCT 8728 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 3 29 94.3 32 GGGGTCAGCCCCGCGTGCGCGGGGAGGAG # Left flank : TCGCGTGATGGCTCTGCCCGGCGTCCAGGCCCTCATGCCCGGATGGCTGCGCACCGCCCCACACCCCGACGATGAGCTGCACGCCCTCGCCCCTCGCCGGGGAGGTGAGGGGTGACCGATCCGGCCCCGCACGACCCCGCCGCGGTCGCCCTCGAACTGGAACGCCTCCGACGCTCCGTCGAGGTCGGATTCGCCAAGACCGACGGCGCCCTCGCACTGCTCGTACAGCGCAGCGACCAGACCGACGCACGCCTCGCCGACCACGAGCAGCGCCTCGACGGCCTCGAACGCGCCCGGTGGCCCATACCTAGCCTCGCTGCCCTGGTCAGCCTCGCCGCACTCGCCGTCACACTCTGGCAAGCCACCGCCGCACACTGAACACCACGCCCCCGCCCCGGCTCCATGCCGAGGCGGGGGCGCTTT # Right flank : CGTACGTGACCAGGGACTTTACCGCCGCCGACCACGGATTTCAGCAACTTTCGCTGACTTAGGCATTCCGGCCTCGTGCCGGTGGCAGGGGCGCCTTCGTTGTTGGAGCGGCAAGCAAAGGCACCCGCGACGAGGAGAGTCGTCGCGGGCGCCCTCGGGGCACCACCGAACGCGTAACCTATGCGGCCACGGATTCGGGATGTGCCCCCGGTCCGCACTCCGCCCCCACGTTGGGAGACGACCAAGGGCGGATGCGGTCGCGTAAGGGCGTGCGTTCGTCGCGTGCGTGCCGACGGCGCCCTCGTTCTGTGCGGATCGTGACCGTCACGGGGTCACGCCAGCAGTGACAGCGGTACGAGTAGCCCTCTCGGTCGGTAGGCAGGGCCGTTTCCGCGCGGTGCGGACTCGGCATCAGCGCCCATACGACAAGCAGGGCGAGCAGGGCCACACAGACGCAGATGATCACGATGCCAAGAGCGGCGCGGTACGTTCCGTCCATC # Questionable array : NO Score: 5.07 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGGGTCAGCCCCGCGTGCGCGGGGAGGAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,0.74 Confidence: LOW] # Array family : NA // Array 1 2501-2350 **** Predicted by CRISPRDetect 2.4 *** >NZ_SIXH01000334.1 Streptomyces kasugaensis strain AM-2504 334, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2500 29 86.2 32 .A.CGT....................... CTTCGGATACGGGTCCTTGCCGTCACCGAGGT 2439 29 93.1 32 ............T...............T TGAGCTACGGCTACGCAAGCCGGAAGCCGCCT 2378 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 3 29 93.1 32 GTGGTCCCCGCGGGTGCGGGGGTGGTCCC # Left flank : GTTGCCGGTAACCGTGCTCACGATGCCGGAACGGTCGCTCATGTCGTACGCCGAGTCCGCCAATCGAGGCCATCTTGAGCGGGACAGTGCATCAGTGCTGCCGATCCTGGCGGACTACCATCAACTACAGGCCGAAGCACTGCCGCGAGCGGCATCCGTGGCCATGATCAGCCAGTTACGAAAGGGCACCCCGTGACGACCACGACCGATACCCCACGTTGGATCAAGTCCTCATTCAGCGAGAACGGCGGCCAGTGCGTTGAGGTCGCCGCCAACCTCGCCGTCTCGCGCGGCGTCGTCCCCGTCCGCGACTCCAAGGACCCGCGCGGTCCCGTACTCACGATCGCCCCGGCCGCCTGGTCGGAGTTCGTCGGCAGCGTCAAGGCCGGCGAACTCTCCGCGTAGCCGCTACTCGCCCCCTCCATCGGTGAGGGGGCAAGGGACGGACAGCCCCGTCACCCTCCACCAGGGCGACGGGGTTCTGTCATGGGCTGCACGGC # Right flank : AGCGGCTGTGATCTCCGATATCAGTGAGTGTCTGGTCGATGAGACCCCTGAGTACGGAAGGTGGGCTAACGGGCTCGGTGTTCCGTGGAACACGTACGCGGCGATGTTCGGAGCTGAGAATTATCAGTGCGGAAAAGCCAACTACGTGCCTCGACCGTGGAGAAGAAGGCAATCTCCGACAGCCCGCCGACGTGCAGGTAGGGCGAAGGACGGTCAGCGATTCTGGAAGCGCTGGGATACCGAGCGTCCCATGCAAGTCAGTTGCGGCGCGTCCGGTGACAGCGGCTCCTGACGGCCGATCGTCACGTACCCCCAACGCTCATACAGCTCCTGGACTTTTCCACCTCCGGCCGCTCCGTTCACGCAGAGAGTGGCGTAAGGCTCCGCGCGTGATTCCAGTAGGTCGTCATGGATCCGTTGAGCGACACCCTGACCGCGCCGTTTCTGCACCACACCGATTTCCTTGATGGCGACTACCGGTCCGCTGGTGTAGATGTTCG # Questionable array : NO Score: 3.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:-1.5, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGGGTGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,0] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCGTGCGGGGTTGGTCCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,4.87 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 2 8749-8109 **** Predicted by CRISPRDetect 2.4 *** >NZ_SIXH01000334.1 Streptomyces kasugaensis strain AM-2504 334, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 8748 29 100.0 32 ............................. ATCCTGCTGTGCTCGACGCCCACGTCGAGCCA 8687 29 100.0 32 ............................. CCGGCGGCTACGTCTCCGAGTTCGAGGCTATG 8626 29 100.0 33 ............................. GCGATGGTGGCCGGGGCGAGTTCAGACGATTCA 8564 29 96.6 32 ...............A............. GCCCAGTAGGACACCCACCGGTGGACACCAGG 8503 29 100.0 32 ............................. GGGCCCAGCCGGCGGGCACCAGCTCCGGGTAG 8442 29 100.0 32 ............................. TCGGCGTTCGCCGCGATGTTCAGCTCTTCCAG 8381 29 100.0 32 ............................. GTGGTCGTGCACGCGGTGACGATCGGCGCGGA 8320 29 100.0 32 ............................. GCCCAGTAGGACACCCACCGGTGGACACCAGG 8259 29 100.0 32 ............................. ATCGTGAGCCCGGCGTCTGGGCCCGGTCGGTG 8198 29 96.6 32 ............................T CGGGCAAGCGGATCGGTTCCATTGCCGTCCTG 8137 29 89.7 0 ...........A.....A...A....... | ========== ====== ====== ====== ============================= ================================= ================== 11 29 98.4 32 GTGGTCCCCGCGGGTGCGGGGGTGGTCCC # Left flank : | # Right flank : TGGCACCAACGCAGGCCGAAGCCCCGCCCGCTGTGCTTGAACGGAACGGCACCGGACGGGGCGGCAGTCATCGGGCGTCAGATGGTGAAGCGCCATGAATCGTCGGGGGTCAGCAGGTGGCTGCCGTCGGGGGAGAGTTCCGCGCGCATCGAGTGCAGAGAGAACCTGTTGTTCTCCTCCCACCTACTGCGGACACGTTCCAGGTCATCCCACAGTCGGCGGGGGCCGCCCTGGTGCACCAGGGGCGACGTTCCGTCCTCGGCTCGGGCCCATGCCCCGTCCGCAGCGAGCAACCACACCACGCGCCGCCCGTCGTCCGGGTAGGTAGCCGCGCGGGTCTCGACCCCGGGCGTGTCCAGCTCGAACAGCCACCGGAGCGGCCATTCCTGCCACAGGTCGGGAATGGATCCCTCGGGGGGCCGCACGTCCTCGCCCTCCCGCACGCGGGCAGTCACGAACACGTCGTTCAGCTTCGCCGGATAGTCCGCTTCCCGCCTGGT # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGGGTGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,0] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCGTGCGGGGTTGGTCCC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [28.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 7967-8421 **** Predicted by CRISPRDetect 2.4 *** >NZ_SIXH01000347.1 Streptomyces kasugaensis strain AM-2504 347, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 7967 29 100.0 32 ............................. GGTGATCGCCCACCCGCTATCCCAGCCGCAGG 8028 29 100.0 32 ............................. GACTGGGTTAGGGGCCGGGCCTTTGCTGCCGG 8089 29 100.0 32 ............................. TCCTGGCACTCGGCCAGGGAGTCGCGGTCGAC 8150 29 100.0 32 ............................. TCACGGGGGGCGCCCGGGAGGTCGAGACGCAG 8211 29 100.0 32 ............................. ACCACAGCAGCGGCGGGGGTGATTTCCTTCTT 8272 29 100.0 32 ............................. GGGTACCACGTGGCGTCGAGGGCGTCGTCATC 8333 29 100.0 32 ............................. TGACGTCGTGGAAGCTGGCCCGCAAGGTCGGT 8394 28 89.7 0 ..............C.....A...-.... | ========== ====== ====== ====== ============================= ================================ ================== 8 29 98.7 32 CTGCTCCCCGCGTGTGCGGGGGTGACCCC # Left flank : GGGTGCCCAGGCCCGCTGAAGAGGTCAATGCGCATCTTGTGGCCGGTGAGTTCATCGAGGTTCTGAACATGCAAAGGCCCGGCGGCACAGAAGATCATTTTCAGGCTGGGCGTATGGAGTTGACCGTTCTCAACTCGTCTGACCCAGGAGACTGACATTCCGATCAGGCCGGTGAGGGCCATTCTCGACATGCCTCGACATTGGCGCAGGATCTGCATTCTCTGCCCAAAACACTGGCGGTGTGGCGTATGGGTCGGGGGCGTCTTCGGCAGGCACGGCCTCCCCCTCTCTGAACAGCTCGGCACTGTCAGGTATGGGCGGGGCCGGTTTCGCGCTTGAATCTTTTGTCGGGGGACTAGGCAGGACGATACGACTGGGGCGACACCATACTCGGCGCGTGATGTGGCGGGGTTGCTGACGCCCCCATGTCCGGAATGTCTGAATCGATGAAAGTTGCTGAAACTCGTGGCCGGCGACGGTAAAGTCCCTGGTCACGTAGC # Right flank : TGCTTCACGGTGGTGTCCA # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGTGTGCGGGGGTGACCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-13.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 1635-1363 **** Predicted by CRISPRDetect 2.4 *** >NZ_SIXH01000134.1 Streptomyces kasugaensis strain AM-2504 134, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1634 28 100.0 33 ............................ TCAGGCACTGGCGGCTCTGATGCCAGTGCTGCC 1573 28 100.0 33 ............................ GGGCGAGACCCCGACCGGCCCGGCCTGGTACGC 1512 28 100.0 33 ............................ CGAGGTTCCCGCCTCGTCGGTCCCGCCCTCGTC 1451 28 92.9 33 .....................T..A... GACCGTGGGCACCAGCGAGGGCGGCGTAATCCG 1390 28 89.3 0 ....G........TC............. | ========== ====== ====== ====== ============================ ================================= ================== 5 28 96.4 33 GTTGTCCCCGCGCCTGCGGGGATGGTCC # Left flank : CGTCCGAATCCCCTTCCCTCCGTTGGGTCAAGTCGAGCTACAGCGGCAGCGGCGGTACCTGTGTCGAGTGGTCACCGATCACCACCGCCGTGACCGGCGCTGTCCCCGTCCGCGACAGCAAGGACCCGCACGGCCCCGTGCTCAGGATCGCCCCGGCCGCCTGGTCCACGTTCGTCGGCAGCGTCAAGACGGGCGAACTGTCCGCGTAGCCGCTTCTCGTCCCCTCCGGCTTCCCGACGGAGGGGGCGAGGGGCGAGAAGAGCCCCGCCGCCCACGAACAGGGCGACGGGGCTCCGCCTTTGGGCTCCCATGTGTGGTGACGGGGCAGACGCGCAGAACGGTTGGTTGAGAGCGTTCAGCGAACAGGGATGGGCGGTGCCCGCCGCAGGACGTGACCGCTGGCAACCCGTGGACTTCGATGAACTGATCCTCTCAGCCCGCCCAAAGAGCAACTGAATGAAAACGGCCACCCCACCCGGTAAAGTCCCAGCTCAGGAAGT # Right flank : GGCGAGCGGTCGTGAACGTCGTCGACCCAATTGTCGGCCCTGTGCCTACGAACGCCCCAGAGTCACCGTTCTGGAGTGATGCGCCACCGCAGCAACAGGCACCGCAGTTTTCAATGTCCAACGCGTGAGCAAGGGGTGGACCGAGACCCTGCGTCGTTCCTGGTAGCGCCGCAAGGCCCTACCGGCCAAGGAACCACGCGACGGCGGGAGCGCGGATGCGACGGCGGCGAGGACGGTTCCGGGCAGGGGGCGGGGATGCGGCACAGTCAAGTGTGGGCACCAGTAGAGGAGTTCGAGTTCGGTAGTGCTGGCTTCGTTTCCTTCGCTCTGCGTAGGTTCACGCACCGTGGCAGGAAGAGCGGCAGCAACGAGGCTCGGCGTGAACTTCGTGAATCCTGCGGGCTCTCCGTGAAAATCCGTGAATCAGGACCTTCTCTGTCCGCTGTGCCCGCATTCCGGCGTATGAGGGCGCGCCGCTTGCTCCCGGGGCGGGAGGCGCC # Questionable array : NO Score: 5.88 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTCCCCGCGCCTGCGGGGATGGTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCATGCGGGGATGGTCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 23603-23815 **** Predicted by CRISPRDetect 2.4 *** >NZ_SIXH01000006.1 Streptomyces kasugaensis strain AM-2504 6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 23603 30 100.0 31 .............................. CGGCCTGCCCAGCGGTGTGCGGCACGTGGTC 23664 30 100.0 31 .............................. GGCAGGTGGGCGGTGGCTTTCAGCCGGTCGA 23725 30 93.3 31 ..T.........C................. AGATCGACCTGACACCGGGCAAAGAACACCT 23786 30 86.7 0 ............C........A..CT.... | ========== ====== ====== ====== ============================== =============================== ================== 4 30 95.0 31 GTGGTCCCCGCGTGTGCGGGGGTGGACCCG # Left flank : TCAAGGTCTGCAACGGCCTCTCGGGCGGCGCCAGCGGCGGCCCGTTCGTCGTGAACTACCAGCCCGACGGCTCGGCCGTACAGACCGCCAGCTACATGGGCTCCTGGGGCGACGCCTACTGGGCCTACTACCGCGACGCGGCCTGGCAGGTCTACAACGGCGCCCAGAACGCCTGACGCACTGCTGCAACTGTGCTTGCGGCGACGGGGCGCAGCGGGACGGCTGCGCCCCGTCGCTGGTAGTGGCTATTCCTGCGCCGAGGCCGGGACGGCGTTGAATTCGGGACCTGTACTGCGCCCTGGCTGGGCCGGGGATAGGGTCGGTGGGGGCGGTTCGGGGTGGCAGGTTGGATGGTTGGCGGGTTGGCTTGGGTGTATCCGCTTTGGTGGCCAGGATGGGCGGAGGGGGGTGCGGATGTATCCGCTATGTCCTGTTCGGCGGATTTCGTGAAAGTGCCTGAAAATCGCGTCGGCCGGAGGTGAATCCGCAGGTCGCGCCTT # Right flank : GGCACACGGAGTGCATGCAGCCCCCAGCTCAAGTGCTCCCCACGCACGTACACGTGGGGCACTCTCGGCCGCGTCGCCACCGCTGGGCGCAATAGGGATCGGGGCGCAACGTCCGCCACGATCTGACGGGCGTGCTACGGGAGACAGGGGTGCCGCACCGGCCGGGCAGAAGGGGGCAAGCAGTCCGTGAGACGGTGCTAAAAATCCTCGCTTTTCCCTACAACAACCACCCTGGATGCAGGGAGGGGCAGCGACTGAGACCACGCGGACACACGATCCGCACCGAGCCGAGCAGCAGGGACTGAACGCACCTGTCGGAGGCCGGCCGATACCCTCCCAGGGCTGGACGGCCTGTCGCGCCTACGGTGGTCTCGCCGAGTGACTGCGCGAGTGCGCTGACGAAGGCTCAGCTACCCCAACCCCCTTGAGAAGAAGGAGTGTTTGTCGTCCCAAACCGCAGAACTGAATGTTCAAGCTCTGAGCCGGTGCGACCTCGGGAG # Questionable array : NO Score: 5.61 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGTGTGCGGGGGTGGACCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGTGCGCGGGGATGGACCCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 25827-26648 **** Predicted by CRISPRDetect 2.4 *** >NZ_SIXH01000006.1 Streptomyces kasugaensis strain AM-2504 6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 25827 29 100.0 32 ............................. AGGACGACGGGCCCGCGCGTCTCGGGGGCGCG 25888 29 100.0 32 ............................. GCGGACCCGCCGCGCTCAATCCAGTCGACCAC 25949 29 100.0 33 ............................. CGACGTGATCGCCACGAGCGGGGACACCCTCAG 26011 29 100.0 32 ............................. ATCAGGGCCTGGTGGAAGGGCAGCAGGGACCT 26072 29 100.0 32 ............................. AGTACCGGTACTGTCGATGGTGAGAGGATTAC 26133 29 100.0 32 ............................. ACCGCCGGTGACGCGCTCGTGAGCCTGATCAA 26194 29 100.0 32 ............................. CGGCCACCGAGGAACACCAAGGCGTTCAGGTG 26255 29 100.0 32 ............................. CCGATGCCGCCAGAACCGCCGCCAAGGCCGGT 26316 29 96.6 32 ...T......................... GGCGGGTGGTCCCTGTGACGATCAGCCTCGAC 26377 29 96.6 32 ...T......................... TCCCGCTTGCCCTTGTGGTTGAGGTGCGGTGC 26438 29 96.6 32 ...T......................... GACGGTGATTGTCGTTCACGTGGTTCACGAAC 26499 29 96.6 32 ...T......................... AAGGCCGGAGACAAGGCGGTCGGGGCGACGAC 26560 29 93.1 31 ...T........................T CCGCGCCGGTATGCCCGTGGAAACGGCCGGT 26620 29 75.9 0 ..TT.....A.CA.G.......C...... | ========== ====== ====== ====== ============================= ================================= ================== 14 29 96.8 32 GTGGTCCCCGCGCACGCGGGGATGGTCCC # Left flank : CCACTGCTCTTGACATCGATCACACCGGCGATGCGATCGTTCGCCGCGACAGCAACCTTCAGGTGCTCTCCTCATGGCGCCGAGAGAAGAAGACTGCGGGATTCGGCGACTGCCCGGCTGCCCGGCGGCGCGGCCCTCGACTGTGACGCGCCAAGCCGGCCGAGGTACACCGCGGGGAGACGTAGCGGCTGGGGGCGTCGGTGATGTCGTTGATGGCAGGTGGACAGATCCCCCCCCCCGTAGAGCTGAGTTCGGAGCTTTCGTCGCTACTGGGTAGCGGATGGCGTGAGCAGTTGGCGGATGCCTTCTTCTGGATGCCTCTCGGGATTGGGCGGAGGTAGTGTCGATGCATGCGGATGTGGTTGGCTCGGGCACACCCACTCGACTGGTCAGGACTAGCGGGAGAGTGCCCGCATGTGTCCGCTATGTCTCATTGGTCGGACTCTGTGAAAGTGCCCAAAATCCGTGCTGGCCCGCGGTGAAACCGCAGGTCGCGCCTT # Right flank : CGATGCAGGAAGTGCTCAGCGACACGCATCTGGGCAGTGGTGCCGCGCATCACAGCATCATCCGTATCGTCATCGGAATCGGCAGCATCGAGTTTCCAGTACCGGCGGCCCACTTGCCACTTGCCCTTTGCGTCCGGCGCCGTCTGTATGTGGAGGGTCGAGAGCGCCGCGCACTCCCTCGGGCGCTCTCGCGCGATCTCCAGCTGCCCGCTACGTCGGCAATCTTCTGGCCGCGGATCGCAGCTACACCCCCAGGACGACCGAGCGATCAGGGACCGGTTTCTGCGTCGCTTGCGTGATGGACCGGGAGGCAGATGGGAGAGGGTCTTGCGAAACCAGGCTTTCTCGGCGCCTGACCAGAGCCGATTTCGTCCGACTTCGAGGGCCTCACGCGACCCATACAACCGGCGTATCACCCCGCCGAGTCGCCCGCGTCGGCGCTCAGTACGCCCGCTCCGACCAGGGCGAACAGGGCGATGCCGAGGAGGATTCGGTAGATG # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGATGGTCCC # Alternate repeat : GTGTTCCCCGCGCACGCGGGGATGGTCCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2354-1960 **** Predicted by CRISPRDetect 2.4 *** >NZ_SIXH01000092.1 Streptomyces kasugaensis strain AM-2504 92, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2353 29 100.0 32 ............................. GACGTCGTCCGGCACCTCTTGCGCCCGGGTGA 2292 29 96.6 32 .............A............... TGGTGGTCCATCACGTGGCCGAACGCGCCGTC 2231 29 100.0 32 ............................. CGTGGCATACAAGACAAGCGGAGCGGGATACG 2170 29 100.0 32 ............................. ACCGACAACTTCATGCGATCGATGAGCCCCGA 2109 29 93.1 32 .............A..............A GAGCGCACGCACCACTGGCTCGTAGAGCGCAT 2048 29 93.1 32 .............AT.............. AGGTCGCGGATGTGCCACTCGCGGCGCTGCGA 1987 28 79.3 0 ...........GT.........A-..GA. | ========== ====== ====== ====== ============================= ================================ ================== 7 29 94.6 32 CTCCTCCCCGCACGCGCGGGGGTGACCCC # Left flank : GTCGACCACGCCGCCGAACCGGACTGGGCAGAGTTCATCGATCCGGCGTACCTGCACGGGGAACACGCGAATACGTTCCGCGACATGGGCGACGCCAAGGCGGCCGAGGAACACGCCCGCCGCTCGATCGGACATGCCCATATGCAGCAACGGGCGCGACGCGGTGCCATGTCGCACGCTGCACTTGCCGTGTCCCACCTGCAACGGCGCGAACTTGAGGCCGCGCACTCGGCGGGTCTGCGGACGCTGAAGCTGTCGGGACAGGTGAAGTCGTCCCGTGCGGTTGAGGCTGTGCAGGATCTACAACGGCGCATGCAGCCTTTCGGCAGTCACCGCCTGGTCGCAGACTTCAACGAACAAGCCCGCGAGTTGATCGCCGCAGCATAGGCGCTGGAATCCAGACAACGTCCCCCCGCCACCGGCTCAAGGCCGGAATGCCTAAGTCAGCGAAAGTTGCTGAAACTCGTGGTCAGCGACGGTAAAGTCCCTGGTCACGTAGG # Right flank : GAAAGTGCCCCCGCCTCGGCATGGAGCCGGGGCGGGGGCGTGGTGTTCAGTGTGCGGCGGTGGCTTGCCAGAGTGTGACGGCGAGTGCGGTGAGGCTGACCAGGGCGGCGAGGCTTGGGAGGGGCCAGCGGGCCCGTTCGAGGCCGTCGAGGCGCTGCTCGTGGTCGGCGAGGCGCGCGTCGGTCTGATCGCTGCGCTGTACGAGCAGTGCGAGGGCGCCGTCGACCCGGGCGAAACCGACCTCGACAGCACCACGGAGCTTCTCCAGTTCGAGCGCGACCGCGGCCGGGTCGTGCGGGGCCGGATCGGTCACCCCTCACCTCCGTGGCGAGGGTCGAGGGCGTGCAGCTCATCGTCGGAGTGCGGAGCGGTGCGCAGCCATCCGGGCATGAGGGCCTGGACGCCGGGCAGAGTCATCACGCGGGCCAGGCCGCCGGCGACGGCGAGGGCTCCGGCGACCCAGGGTAGGGCGGCGGGGATGCCGGAGGCGTCGACGATCG # Questionable array : NO Score: 2.84 # Score Detail : 1:0, 2:0, 3:0, 4:0.73, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCCTCCCCGCACGCGCGGGGGTGACCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA // Array 1 790-29 **** Predicted by CRISPRDetect 2.4 *** >NZ_SIXH01000107.1 Streptomyces kasugaensis strain AM-2504 107, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 789 29 100.0 32 ............................. CGGCCGCACTTCTTGGCGGATGGACGACCGGT 728 29 100.0 32 ............................. ACAGCTCCAGCGGCCGGACCATCAAGGAGTCG 667 29 100.0 32 ............................. CGGCAAGACCAGATATGGGCAGGCAAGATCCA 606 29 100.0 32 ............................. TTCGACCAGCGCGGCGAGACGTGGCGGGCGCA 545 29 100.0 32 ............................. CGGTATTCATCTGCCATCTCCCGCGTGGACAG 484 29 96.6 32 ............................T TGCAGGACGGGGCTTGCGCATCGCCTAATCAC 423 29 100.0 32 ............................. CTTCCGGAAATCATCATCGTCACGGACGAGGC 362 29 100.0 32 ............................. CGGCTCCTCGGGCAGGGGCTCGCCGAGGAGTA 301 29 100.0 32 ............................. CCCCGGGGCCGGGTCCGGGTGTAAGCCCGGCC 240 29 100.0 32 ............................. GTGAACAGGCGGACGCGGCCGGTTTTGCTGTC 179 29 100.0 32 ............................. CTGCACCGTGACTTCCCGCAGGGCCCGAGTCA 118 29 100.0 32 ............................. GCTCCAGCACCAGGGGTCCACGGTGACGGGCA 57 29 93.1 0 ........T....C............... | ========== ====== ====== ====== ============================= ================================ ================== 13 29 99.2 32 GTGGTCCCCGCGCGTGCGGGGATGGTCCC # Left flank : TCGATGCGCGGAAGATGAGACTCAGTGCGCGGACGAGAAGCGCATGGAGGAGATCGTCAAGCTTGCTGCGGAGAAGAAGATCGGGATCGGGGGGCCGGACATCCTGCCGGACAGGTATTACCCGACGCGGAAGTCCTACCAGTTCATCGAGAAGTACAAGAAGCAGCTCCCGGTCGTCGCCATGGCGGTCCAGGAACCCACCCTCAAGTATGAGGACCCCAAGAACCCGGGCCACCTCTATACCCGGGAACGATTCACGGACTTCGCGCGGGACAGGCTCGGCGCAAGTTCCATCTTCTGGACCGTCGAGGCGGACTGGCTGAAGAAGCCCGCGATGTGACGGATGGAGTCCTGGCCTCAGCTAATAGGGCATGAGCTGCGTTCGAGGGTGGAGGCGAGCGGCAGAGGGCATCCATATGCCCGCTACGTCTGATTGGCCGGACTCTGTGAAAGTACTCAAGAATCGCACAGGTCCACGGTAAAGTTGCAGGTCGCGCCTT # Right flank : CTACGCCCACCACTGCGGCAAGGGCGGTG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCGTGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCGTGCGGGGTTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [13.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //