Array 1 5376-6990 **** Predicted by CRISPRDetect 2.4 *** >NZ_SGBK01000015.1 Salmonella enterica subsp. enterica serovar 4,12:d:- strain LBMM 890 NODE_15_length_89140_cov_19.6667, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 5376 29 100.0 32 ............................. CCTTGTGTTGCTCTTTGAATTGCTGCGCCATA 5437 29 100.0 32 ............................. AGGCGCGGGAGGCGGCAGCGGCGGCGCAGTCC 5498 29 100.0 32 ............................. CAGATGATCATCAAAAATATCTGAACGTCTCA 5559 29 100.0 32 ............................. TGCACATTCCTTCGTCCAGATAACCAGCAGCG 5620 29 100.0 32 ............................. ATACAAAACCGTTCAGTGGGGAAAGATCTAGT 5681 29 100.0 32 ............................. CTGACCTCCTGTTTATCCTGCCCGACGTACAC 5742 29 100.0 32 ............................. GCGGTCAACGCTTGACGGCCAAATCATGGCGG 5803 29 100.0 32 ............................. CCGCCCGTGTTGCGCAGTATCGGGATTGATAT 5864 29 100.0 32 ............................. GCGTTTAACGTACTTTTCCACGCCGTCCGCTA 5925 29 100.0 32 ............................. GGGCAATTCGCGGCGGGCGATGTCGCGCAGCG 5986 29 100.0 32 ............................. TAAGCAAGGAGTGGAGAAATGATTGATTTTAG 6047 29 100.0 32 ............................. ACGGGTATTCCAGATTAATTCCGGTCGGTGTT 6108 29 100.0 32 ............................. CCAACGGACAACCAGTGTGCTGGAGTGAGGCG 6169 29 100.0 32 ............................. GCGTTGAACTTGATATTCTCTACACCGATGCA 6230 29 100.0 32 ............................. TACGGGCGCAAAATCACTGAACATCTGCGCAG 6291 29 100.0 32 ............................. CTTCAGCCTGCCATTTTCTCGGACCTGTAGCG 6352 29 100.0 32 ............................. TCGGTCAGCTCGCCTTTTCGGGTCCAGGTATC 6413 29 100.0 32 ............................. CGCTGGCGCGCCACTGCATCAGTACACGCAGT 6474 29 100.0 33 ............................. GCGGCGGCATTGTTCCCGCAGATGGATACCGAC 6536 29 100.0 32 ............................. CCGGTAAATCCGGCTTTTTTTACGCCATCTGC 6597 29 100.0 32 ............................. TGGACGCCACCACGCTGTCAGAATACCAGTCA 6658 29 100.0 32 ............................. GAGGGGGGCGATCCGGGGTCGGGTAAAATCTG 6719 29 96.6 32 .........A................... GGTTCGGGCTGGTTTACGGTGAGCTCAATTTC 6780 29 100.0 32 ............................. CCAGCTCATCGATAAAGCGACCAACCCGCCGT 6841 29 100.0 32 ............................. TCCTCGCTTCGCTGCGGGGCCTCCGGCGCGTT 6902 29 100.0 32 ............................. AGCGGCTAAACCTGCCGGTTATCGCTGAGCAG 6963 28 93.1 0 ............T..........-..... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTAATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGACCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATATGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCTGATTGG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 23673-25715 **** Predicted by CRISPRDetect 2.4 *** >NZ_SGBK01000015.1 Salmonella enterica subsp. enterica serovar 4,12:d:- strain LBMM 890 NODE_15_length_89140_cov_19.6667, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 23673 29 100.0 32 ............................. GCTGGTGGGTCACTATCGGCAAAATTGAACAC 23734 29 100.0 32 ............................. GACGAATGATAGTGACATTTATTTTGACGGTC 23795 29 100.0 32 ............................. GCACGCGTGCAGGATGCTCCAGACGGCCCCGA 23856 29 100.0 32 ............................. CGTCAGCGGTTGACATGGCTAGCAGCTTACGC 23917 29 100.0 32 ............................. AAAATGAAAAGCTGGCTAGCGCCGGTGAAATA 23978 29 100.0 32 ............................. CACCCTGTAAAAATAAATTACTGCCCGTTTTG 24039 29 100.0 32 ............................. GGAATTTTAAACAGAAAAAGGTAAATGTATGA 24100 29 100.0 32 ............................. GCGAATGGACAGTGCAATTCGGCGATGAAATT 24161 29 100.0 32 ............................. CCCCGGCGGGTGCCAGGGCTTGGGAGGTTAGC 24222 29 100.0 32 ............................. GCATTAATCAGCTCAATACGGACGTAGTTCAG 24283 29 100.0 32 ............................. CGGCATAATTTCAGGAATAAAAAATATGGCTG 24344 29 100.0 32 ............................. GCAGGGATTACCCGCCAGGGCCTGGAGCATGG 24405 29 100.0 32 ............................. ATCGCTATATTTAGCCCGCAGCTCACTAATAA 24466 29 100.0 32 ............................. GTTTTACAACTCAACAGACCATGAAACTGTTC 24527 29 100.0 32 ............................. TCGCCGTGAGGCATCCAGATTTAAGCAACTGC 24588 29 100.0 32 ............................. CGCATTCATTTTCAGTCTTTATCAATCGCGGG 24649 29 100.0 32 ............................. GCTAGCAATGATGCGGATTTGATGGGCGCAGG 24710 29 100.0 32 ............................. TCTTGTTTGTTTCTGATTCTTTTTCTGAATGA 24771 29 100.0 32 ............................. CCTCATAATTAGTTAAGTGGTGGCGGTATTGC 24832 29 100.0 32 ............................. CCGGATCTGGAGATAACGGGGATGTTGACACA 24893 29 100.0 32 ............................. AACTGGATTTGAATTATTTATTTCACTTTCAA 24954 29 100.0 32 ............................. CCATTAACGCCGGAAGAGTCTATAGAAAAATT 25015 29 100.0 32 ............................. GCAGGCCGAATAAACGGCTTAGCGGGAATACC 25076 29 100.0 32 ............................. CCGAACAGCAGGCGATGATTGAAGCGTACGCC 25137 29 100.0 32 ............................. TATGGGTATAATTCTCCATTTGTATGCTAATG 25198 29 100.0 32 ............................. GCGTTTTTATCGTGGACGGCGCCAGCAGCGGT 25259 29 100.0 32 ............................. TGGGGTCGGTGTCGGCTATTGTGGCCGATCCG 25320 29 100.0 32 ............................. ATTCCCCAGCCAGTACCCGTGTCAGTGGGCGC 25381 29 100.0 32 ............................. TAACTGGTGAGGGTGAATTTGTTTGCATCCGT 25442 29 100.0 32 ............................. TACGCCGGGATGATTTCAACTACGTTGGACTG 25503 29 100.0 32 ............................. CCCGCGTGACGGTCTGGGGTGATCATTGATAA 25564 29 100.0 32 ............................. GGCTTTTCCTGTCAGGAGTACACAGGGTGGGT 25625 29 100.0 32 ............................. TTGATCCGGGCATTTGAATATTGGGCTAAAGA 25686 29 100.0 0 ............................. | A [25713] ========== ====== ====== ====== ============================= ================================ ================== 34 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //