Array 1 22425-24596 **** Predicted by CRISPRDetect 2.4 *** >NZ_PGEK01000018.1 Castellaniella caeni strain CD04 NODE_18_162.506, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 22425 29 82.8 32 ..AA..................AC.C... GACATGATCGCCGAGGCCCAGCGCCGCGGCGG 22486 29 79.3 30 T.CA..................C.G..G. CGACATGAACGGTGAGTTCTGGCACGACGG ACA [22508] 22548 29 69.0 32 T.CA..................AC.CTTC GTGAGCGGCGGCAGCAGCGGTGTGATGGCCGG 22609 29 89.7 33 T.CA......................... CCCTTGAGCAGCGTTTCAGCCTCGGCCGTGTTC 22671 29 100.0 32 ............................. TGGAACTGGCTGACGCCATGATTCGCATTCTG 22732 29 100.0 32 ............................. GCGTGGTGGGAACAGTTGACCAGCCTGGAACT 22793 29 100.0 32 ............................. CCGTTGAATACAGCCGTATGTTCATCCGTGAC 22854 29 100.0 32 ............................. AGAAAACAAGGTTGAAACCTATCTGAATGACC 22915 29 100.0 32 ............................. CCACGAATATGATGCACGTTGGCGCTCAACTT 22976 29 100.0 32 ............................. CTCGGACTGTCGGGAACCGCCGCTGTCGCCGC 23037 29 100.0 32 ............................. TTATCGTCGATTTCCTCGAATCGGGTGTTCCA 23098 29 100.0 32 ............................. GCCGCATTCTCCGGTGCCGGGGAACTGCAGGC 23159 29 100.0 32 ............................. CCACCACTTTGCAAGAACACCCCCAGCCATTG 23220 29 100.0 32 ............................. CCGCACCGTCCGCCTACCAGGCGAGCAAAGTA 23281 29 100.0 33 ............................. GCAACCGGCGTAACTCCCGAGGTTGATGCCGCC 23343 29 89.7 30 ......................C..C..A ATACTGCGCCAGGTCGGCGCCGGCGTTCGG ACA [23365] 23405 28 79.3 34 T.CA..................-AC.... AGAAAAAGCTGATAGCGCCTGCCCACAAGTTCGG 23467 29 72.4 32 T.CA..................AC.CG.C TCTTTCTTATCGGACACCCAGATGGCCGTCGG 23528 29 75.9 29 T.CA..................C.GG..A GCATCGGGGCCGTCATACCCTGCAGGCGG ACA [23550] 23589 29 72.4 32 T.CA..................AC.CAT. GCCCTCGTCTCTCCGAGGTGTCACGCCTACGG 23650 29 89.7 32 T.CA......................... ACGGCAGCCCAGAAATATGCCCTGACCTTCGC 23711 29 96.6 33 ............A................ TATTCGAGCATCGCGCCCAGGACAGTCACCTTC 23773 29 93.1 33 ...........A..T.............. CGACAGTCGATGACTGACAAATACAACGACGAC 23835 29 75.9 33 ...........ATG........AC.CG.. CACGTCGCCCGCCATGTCCTCACCGCCGAGCGG 23897 29 72.4 29 T.CA........TG........C.T.T.. ACCTTCAAAGCCATTAAGGGCGACGACGG AAC [23918] 23958 29 82.8 32 T.CA........TG............... CCGGTTGATGTTGGCGATTTCGTTGCCCTTCT 24019 29 93.1 32 ............TG............... AACCCGGCGTTGCGCGTGAACTGGCTGGTCAG 24080 29 93.1 32 ............TG............... CAGTCCCAAATTTCCCATGAAGCAGTACCAGA 24141 29 93.1 33 ............TG............... CTCCAGGTGTACTCATCACCGCCCACGACGAAC 24203 29 72.4 32 ............TG........AC.CTTC TTCGTCCACTTCGCAATTTCGGCCCAGGTCGG 24264 29 72.4 31 T.CA........TG........AC...T. AAGAAACCCAAGGAGAATAACCATGTCGCGG C [24289] 24325 29 69.0 30 T.CA........TG........AC.G..A CACACTAACGGATGTGCGTAATAGTCACGG CA [24350] 24386 29 82.8 32 T.CA........TG............... GCGTCGGCATGTTCATGCAAACACTGCAAGGG 24447 29 93.1 32 ............TG............... ATCAGAGTATGTCGCGCAGGCTGCTGATGAGC 24508 28 79.3 32 ............TG........-AC..T. CAGCAATTCTGCATGGCACTGTCAAACAGCGG 24568 29 65.5 0 T.CA........TG........AC.CT.T | ========== ====== ====== ====== ============================= ================================== ================== 36 29 87.1 32 GTGTTCCCCACGCACGTGGGGATGAACCG # Left flank : ACAGCCAACATCAGGTTGGAACGCTGGTAGGGCCGGCGCGTCAGCAAGGGCCCAAACACCGCGATGAACAGCGGCGTGGTGCCCAGGCAAATGGCCGCCACCGAAGCATTGGTGAGCTTGACGGCCAGGTAGAACAGCGCCCAGGTGATCGCCAGAAGCACACCGGCCCCGCTGCAGGCCGCCACCAGCCGCCAGGGCAGCTTGCGAATGCCGCGCCACGTGGCGGGCAGCAGCAGCAAGGCAGCCGACGCCAGCAGCATGCGCCACCACACCAGCGTGACAGCATCCAGCGTGATCAAGCGCCCCATGATGGGCGTAAACCCCCACAGCACCACGCAGAAATGGATGAGCAGATACCCACGCGCCGCCGATGGTTTGGGTTTTGTTGAGATGGCGAACATGGGAAAGAATGTGAGGTGCGGGGGATGGAGTTTAGAACACATCGAATAGCGTGCATGATCCAGAGGCTTGCTGGGCGGGGTGAAGCGGGGGCAGGACGG # Right flank : TAAAAGCAAGCCATTGATTCAAATGAAGAAAAATGGCATGAAAAATTCTACCGGCTTTTTTGTTAAAGATCGGCACTCACGAAACAGCAACCTTACACCAACCTTCTTGCATCCCACAAAGAACCCGCGCACGCGGGACACACCCCCTCACCCCCACATTGAACGATAATACCGACTCTCCTCCGCAACTCCTCGCCACGCCTTCCCGCATGACCTCCCCCGATCTCTCCGGCCACACCCCCATGATGAAGCAGTATTTACAGCTCAAGGCCCAGGCGGGCTCGCATCTGCTGTTCTATCGCATGGGCGACTTCTACGAGATGTTCTATGACGATGCCGAGCGTGGGGCCAAGTTGCTGAACCTCACGCTCACCAAGCGGGGCACGTCCAACGGGGCGCCGATCCCGATGGCGGGGGTGCCGCATCACGCCATGGAAGGCTATCTGGCGCGGCTGGTGGCGCTGGGCGAATCGATCGCCATCTGCGAGCAGGTGGGCGAC # Questionable array : NO Score: 5.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.35, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGCACGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGCCCGTGGGGATGAACCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [15-50] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //