Array 1 265729-266671 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHTKP010000001.1 Kitasatospora aureofaciens strain CPD02 NODE_1_length_484525_cov_73.408377, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================================================================================================================================== ================== 265729 29 79.3 30 ........TT..T...........CA.T. CGGATACGACGTCAGCCACGACGCCCAGGT T [265748] 265789 29 79.3 152 AC...T...................A.TC GGCATAGACCGCGCAACCACCGGCCATGCGGCGTGCGACCTACGGGGCCGGGAGTGTGTCGTGGTTCCCGAGGAAGGTCATAGGCCTAATCCAGTCCGCCCCACAGCCGGGGGTGTACCCAGACCGAGGGTGTACGCCAGAGCGGCCGGGTC 265970 29 86.2 32 A.................A....A....A CCTGCGCCCGGGACGTTCATCGAGGTGCTGAT C,C,G [265979,265988,265990] 266034 29 86.2 32 ..........T..A....A.........T GCCCACTACACCGATGCCGAGGTGGTGCGGGC T [266051] 266096 29 86.2 31 ...TA......C................C AGCCCATGCCGTCCCGCTAGCACGGGACTTC G,T [266105,266123] 266158 29 100.0 31 ............................. CCGTCCTCGAGGTAGACGCTCTGGCCAGTCG 266218 29 79.3 31 .G.T....T..............T.A..C GTGCCTTCTACGAGATCGCCCTCACCGACTC 266278 28 93.1 32 ................-...........T GCCTCGCGCGCCTGCCACGTGATCGATTGGCG 266338 29 89.7 32 .A..............T........A... AGCCAGGCGACCCGGTCCCGGTCCCACCGGGT 266399 29 86.2 32 ...........T............CA..C CGCCAGTCTCCGCCCAACTTGACGGCGGGTAG 266460 29 93.1 32 ......G.....................C GAGTACGGATATATCTTCAACGCCGGTGCTGG 266521 29 93.1 32 ........................C...C GAGCGGGAGGAGGCATGGGCACCGGCCCAAGT 266582 28 82.8 32 .........T...AA.....C.-...... AGGCATGTCTCCAGGCCGAAGGTGTTGTGGAT 266643 29 75.9 0 CC..AG................A....GT | ========== ====== ====== ====== ============================= ======================================================================================================================================================== ================== 14 29 86.5 41 GTCCGCCCCGCGCGGCCGGGGGTGTGCCG # Left flank : TGCAGTAATACATGGGGAGCAGGTCGATCCCGCGACGCCGACGGCGTACCCCAGCGGTTGGTGCCAGCGTCCCGCGAGCTGTAGCCCGCCCTGCGCGGCCAGTGTTGCGCCGAAGGGAGCGGCCGCGGTAGAGACGGTGTACAGGCCCGGCGCGGCCGGGGGTGCGCCCTTGTTGGGCTGTCGCCGATTCGGCAGAGCGGGTTCGCCCTGCGTGCTGGGGGTGTGCCCCCGTAGGAGGTGTTCAGCGAGAGGGACGTGCAGTGTGCCCCACGTGGCCGGGGGTGTACAGGCCTTCTGACTCCCGGGCTCCTTCCATTGGAGATCCACCGCCCCGCACGGCCAGGGGTGTGCCAGTACGGGTCGGCTGGTAAAGGTGATCCCGGTCATCCGCCCTGTGCCGCCGGGGGTGTGCCGGTGTCGGAGATGCGGCGAACCTCGCTCTGGCGGTCGGCCGCCGCGCGGCTGGGGGTGAGCCCGATCTCCGACTGGCGCACCGAGGA # Right flank : TGTCTCTGTACCCACGATGGCTCGGCTTCCCGGTGGGGAGTGCCAGGATGGATACCGTGATCGACACAGACGCGACCGTGCCGACGCAGGGACTCTGGGCTCCGCTCTCACCGCAGGAGGTGGCCGAGCTGCTGGCCGAGGCGACCTTCCCCTGGTGGATCGCAGGTGGATATGCCATCGAGCTGACCGTTGATGAGGCGTATCGCGAGCACGGTGATGTCGACGTGCTGGTGCTTCATCGCGACCAGGCGAGGGTCCGCCGCCTACTTCGGCAGGTAGGATCTCTTCCTGTGTCCCTGTCAGCGACGAACCGCTCCACGATAGCTCCGACCGTGCGCCAGGAGGTGCGCATCAGCTGCGCGACGGCGGACTTGGAGCACTCGGTGGCCATCCAGGCTGCCTGCTGGTCGAAGGCGTGGGTGTGGCCCTCGCCGTGCCGGGCCCAGGGGACGGCGGCCGTGACCACCCCGTGCTCGCGGCAGGCCACCCGAGGCAGGTCG # Questionable array : NO Score: 3.41 # Score Detail : 1:0, 2:3, 3:0, 4:0.40, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.25, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGCCCCGCGCGGCCGGGGGTGTGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,2] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCCCCGCGCGAGCGGGGGTCTACCG with 87% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.70,-4.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [8-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,1.01 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], //