Array 1 2944932-2946099 **** Predicted by CRISPRDetect 2.4 *** >NZ_UGUO01000001.1 Pseudomonas aeruginosa strain NCTC8058, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2944932 28 100.0 32 ............................ TGTCAGAAGGGATTACCGCGGACCTGGTCGCA 2944992 28 100.0 32 ............................ TCAGGCTCATTTCGTTGTCCTCGATGCCCCGG 2945052 28 100.0 32 ............................ GGGAGGGCATGTGATGCGAGCAGACGAGTACC 2945112 28 100.0 32 ............................ GGGCCCGACGGCTAGTAATTCGCGGAGGATGG 2945172 28 100.0 32 ............................ TGTCCGCAGCAGGCCGGTAATCCGGATAACTG 2945232 28 100.0 32 ............................ TGTCCGACAACCCGCATAGCATCCCTGAGCAA 2945292 28 100.0 32 ............................ AAGGACTCTGATCTCTTGACTCACCATTTCCT 2945352 28 100.0 32 ............................ CGCTGCCATCCGGCGCATTTCCCTCTCATAGC 2945412 28 100.0 32 ............................ AACATCCAGCCCGAGCTGAGCGATATCCCCCG 2945472 28 100.0 32 ............................ TGCTCGCTGATGACCAGCCGCAGCGCATGGTT 2945532 28 96.4 32 .......................G.... CGCAAAGCCCCGCAGGACAATGACTTGATATC 2945592 28 100.0 32 ............................ AATCCGAGGCGGAGTTCAGCCACTTGGCATAG 2945652 28 96.4 32 .....................C...... GCAGTGATCGAGCGCGCACGGTCGCGCAAGAC 2945712 28 100.0 32 ............................ AGAAGCGCATCCAGCGATACGAAGATGCACTC 2945772 28 100.0 32 ............................ AACCAGCGTGTCGATGCCGAAGCGAAGGCCCG 2945832 28 100.0 32 ............................ AGTGAGCACGATCATCATGTCGGCCTGCTGGC 2945892 28 100.0 32 ............................ ATCACCGGAGGCCACGGATTCGCTGTAGCTCA 2945952 28 100.0 32 ............................ ACCAGCTGCTGCGAGTGCTGGTTCGCGCTGGC 2946012 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA 2946072 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 20 28 98.2 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAGAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGAACTTCGTTGCGGACATGCCGATGAGGTGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 2956992-2954624 **** Predicted by CRISPRDetect 2.4 *** >NZ_UGUO01000001.1 Pseudomonas aeruginosa strain NCTC8058, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2956991 28 100.0 32 ............................ GGCAGCTGATATGTCCTGACACGGGAATCCGC 2956931 28 100.0 32 ............................ TGGGGCGAAACCCCTAGGCGCCGGGCTAGCTC 2956871 28 100.0 32 ............................ TCCTCAAGTTTTGTCAGCCGAGCCAGCATTTC 2956811 28 100.0 32 ............................ TGATTGCTGCGGCACCTGAACTGCTCTCCATT 2956751 28 100.0 32 ............................ TACCCCTCATTAGCCCGGCAAGTCCGGGCATT 2956691 28 100.0 32 ............................ TACCCCTCATTAGCCCGGCAAGTCCGGGCATT 2956631 28 100.0 32 ............................ ACTCTGCGCCTCGACGTCGGGATCTACGAAAA 2956571 28 100.0 32 ............................ AAAATGAAACGGATCAGCTCGCCGACAATCTC 2956511 28 100.0 32 ............................ TGGAGCGCTGCACCATTACCCGCGCAGCCCGA 2956451 28 100.0 32 ............................ ACCCGAATGCATCACCAACCCACGGCGTGCCC 2956391 28 100.0 32 ............................ CTCCAGAGCGGGTCCGACAATAGTCAAAACCC 2956331 28 100.0 32 ............................ AGGACTCAGCGAGCCTTCACAAGACGCCTCCA 2956271 28 100.0 32 ............................ ATCGAGCAGTGCATCGCCGTCTACAACCAGCT 2956211 28 100.0 32 ............................ TGATCGACATCAGGAACGCCCACAGAGGCCGC 2956151 28 100.0 32 ............................ ATCACGCCCCAGCCACTTTTCAACCCCGCACT 2956091 28 100.0 32 ............................ GGTGTGTGCGGCCAGCTCGGACCCGAACTTGA 2956031 28 100.0 32 ............................ AGTCACAGCCGCCGCAGCAGCCAGACCGCCCG 2955971 28 100.0 32 ............................ TTAGCGAGTCACCGGGACAAAGGTGACCACGG 2955911 28 100.0 32 ............................ TGTCCGAACTCCCATCTGTTGCCCTGATCAAC 2955851 28 100.0 32 ............................ AGAAACTGCGGAACCGGAAGTGCATTGATCAA 2955791 28 100.0 32 ............................ AAGTTCGTGACTGAGCACCGGCACCTGGGCAT 2955731 28 100.0 32 ............................ ATCACGTGTGATTTTCGATGAACGTGATTTTT 2955671 28 100.0 32 ............................ GGAACGAAGCGGGTGCGACACGTCGCAACTGC 2955611 28 100.0 32 ............................ AGACCATCACACCGGTGACGCTGCACATCGTC 2955551 28 100.0 32 ............................ GCATAAAAGTGCCAACGTCGACTTTGTAGCGT 2955491 28 100.0 32 ............................ AGGAGGTTCTGGTCCGTCGCCCAGTTCCCGGT 2955431 28 100.0 32 ............................ TCGCCCGTCACGGAGCCCGCCGCCTTGGTCAC 2955371 28 100.0 32 ............................ AGAATGGACTGCCGAGCGCCGGCCGCCAGTTG 2955311 28 100.0 32 ............................ CGGCATTGCTGAATGCCATAGCGGATCTGCTC 2955251 28 100.0 32 ............................ GGCATCCCCGAGCGCAAGCTTCCATCCCCGCC 2955191 28 100.0 32 ............................ AGCGGCCTGGACCTGGTTCGGCCCGTCCAGGC 2955131 28 100.0 32 ............................ CAGAAGCGCCGGCCGTTGGCGAAGAACCAGTA 2955071 28 100.0 32 ............................ GATACCTGACGGCCTGGTGCTGGATCACCTGT 2955011 28 100.0 32 ............................ TGTCCTTTCAACTCGGTCTGCTCGTAGAGGTT 2954951 28 100.0 32 ............................ TTGAGAAGCCGCGGGTGTCTAAGAAACTGGTA 2954891 28 100.0 32 ............................ AAGACGTGGCAGGCGGCCTACAACCACGACGA 2954831 28 100.0 32 ............................ TGACTGCGGGGCTGCACGACATAGTCGTCGAC 2954771 28 100.0 32 ............................ GTATGAAGTGTGTTACCGCGTGGGCGATTCCT 2954711 28 100.0 32 ............................ TCGTAGTGGCCCCACGTCGGCGGTAGCTCGCC 2954651 28 96.4 0 ...........A................ | ========== ====== ====== ====== ============================ ================================ ================== 40 28 99.9 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTAGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : CTCGAACCCACCTCGGCCACAACAGCCACCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTACCAAACATCCGAATATAAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //