Array 1 33773-37163 **** Predicted by CRISPRDetect 2.4 *** >NZ_AYKG01000069.1 Salinisphaera japonica YTM-1 contig9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 33773 28 100.0 32 ............................ ACGACAAAATATTTCGCGACGGGTCACTGCTC 33833 28 100.0 32 ............................ GAACCGGTATTTGCGCGCAGATGAGGTGGAGA 33893 28 100.0 32 ............................ CTAGAGAGCATCGTCAGCAACTTTAGAGGTGA 33953 28 100.0 32 ............................ TGATCGCCGTCTCGGTAATCGTGATGCTCACG 34013 28 100.0 32 ............................ AAGAACGCTTGCGGCTTTCTCGTCGCCCATCG 34073 28 100.0 32 ............................ GCTGGCAGGAATGTCGCTAATTGAATCCAGGC 34133 28 100.0 32 ............................ GCTGTATCTCGACACGTCAACGTATTCGCTGT 34193 28 100.0 32 ............................ TGGACTGGGCGGGCGTGCTGACGCAGATGATC 34253 28 100.0 32 ............................ AACGTGATGGCGTATGCCGAGCTGGTGAGCGA 34313 28 100.0 32 ............................ AATCGCGGGTGGTGTATTTGTTACCGAGAGTA 34373 28 100.0 32 ............................ AAACCAAAGAGGCGGCCTGAGATGCAGTGCTC 34433 28 100.0 32 ............................ GCGCGCGCATGACGACAACGTCCACGACAAAA 34493 28 100.0 32 ............................ ACTACGCAAATCTGTGCAGACCATGTGGTAGT 34553 28 100.0 32 ............................ ACGATCAATGCCAAGCATGTCGGCGATGAACG 34613 28 100.0 32 ............................ GCGTCTCAGTCATCGCCCGCTGGGCGTAATGC 34673 28 100.0 32 ............................ TCCGTGATCTGCACGACCAGCATGTCGCCGGG 34733 28 100.0 32 ............................ TGATTATAGGTTCGGATCGCCTTACCGTTGGC 34793 28 100.0 32 ............................ AAAGAGATGGCCGAATCCCTCGAGCGCGAGCC 34853 28 100.0 32 ............................ GAGATCGGCGCGCTATCGATCGTGACCGTGCG 34913 28 100.0 32 ............................ ACGCGCAAGTGGGCGGTCGTTACCCCGGCCGG 34973 28 100.0 32 ............................ ACATTATCGCAAACCAACCGACGTGGCATAAG 35033 28 100.0 33 ............................ TTTGTACAGCGGGGCATCGTCGAGCTTTGTTTC 35094 28 100.0 32 ............................ AACACGACCTGGGCTGATCTAGTCCAGCCTGC 35154 28 100.0 33 ............................ AATCGTTACCGGAGCGAGCACGGATACTCGTAT 35215 28 100.0 32 ............................ CGAAAGCGCTGATCGATCGGGTCATCGAGCAG 35275 28 100.0 32 ............................ AGCGTGCCGATGCGCGTCGCCAGGATATTGGC 35335 28 100.0 32 ............................ CGTGGGCTGGCGATACGTGATGCTGTGCATGC 35395 28 100.0 32 ............................ GAAGCCCGCGATCACGCGGAATCGGCAGTCAA 35455 28 100.0 32 ............................ ACGGGTTGCACGTTCGACGCATCAAACGCCTA 35515 28 100.0 32 ............................ TGGGCGTGCGGGTCCATCTGGCCCGTGGTCAA 35575 28 100.0 32 ............................ AGCGCAATCTGACGCGAAGCCTCGTATCGCAA 35635 28 100.0 32 ............................ ATGTAGCTATCGGCTGCGCGCTGCATCGTGTT 35695 28 100.0 32 ............................ AGCGCGCGGACGCCCGCCGGGCCATGTCCATC 35755 28 100.0 32 ............................ GCTGGCCTGAACCGCCCGGGCGTCAACGCCGA 35815 28 100.0 32 ............................ TGAAACGCGTTGACCCAGCCGATGCCCGAATC 35875 28 100.0 32 ............................ TGCATAACCTCCGCAAGTTAATCGAGCGAGAG 35935 28 100.0 32 ............................ ATGTCATAGCTGAGATAGATCGAGTCAAACCG 35995 28 100.0 32 ............................ GCTTGGATTCTGTCATCGGAGCACTAGGCGGG 36055 28 100.0 32 ............................ AACTGGGCGCGCCACCACGAGCAGATGGCCGA 36115 28 100.0 32 ............................ GATCTCATCGATGAGATCAATGCGCTCAAGCA 36175 28 100.0 32 ............................ TGCTTGAGCCGGTGTATGCCATCCAGATCGGC 36235 28 100.0 32 ............................ TGCGCGGCACGCGATTGGACAAGGGCACCTAC 36295 28 96.4 32 ........T................... GTTGACGCGTTTCGCGAGATGTTGGTGCGCGG 36355 28 100.0 32 ............................ AGCGCCTCACTCTCGATGTGTAGGACTGCATG 36415 28 96.4 32 ...............A............ ATCACAAAACACGAGATCGTGTCGTGCTCGAG 36475 28 100.0 32 ............................ GAGACGTGGGCCCGCTGGGCCCGTGACGCGAT 36535 28 100.0 32 ............................ TTCGCCGTACGACGCCGGCGGCCAGGGCCGGC 36595 28 100.0 32 ............................ TCGATTGCCTGTGCAACAGCATCTCGCTCGGC 36655 28 100.0 32 ............................ ATCGAAAAACTCGACGTTTGCGGACGAACTCC 36715 28 100.0 33 ............................ GACATGGCCGACTTCTGTACCTGCATTGTTGAT 36776 28 100.0 32 ............................ CAGACGCAGGACAAACTGGTCAACCCGCCAAT 36836 28 100.0 32 ............................ TGGTTGACGCGTGGCAGTGCTACTGCCGTACG 36896 28 100.0 32 ............................ CGGCGAAACCGTCCACGAGCTGCTGGAGCGGG 36956 28 100.0 32 ............................ ATCAGTGACGACCCAAACCGGAAAGCCGCAAC 37016 28 100.0 32 ............................ GGCGATTCGTCGGCGCTGGCTTCGCCGGACGG 37076 28 96.4 32 .............C.............. AGACGAGGGCACGTAATTGACGGCTTCCTGAG 37136 28 92.9 0 ......................C.A... | ========== ====== ====== ====== ============================ ================================= ================== 57 28 99.7 32 GTTCGCTGCCGCGTAGGCAGCTTAGAAA # Left flank : CGGCCGACATCCGCACCAACGCCGCCATCCAGTTCATCGGCGCAGCACTCGTCACCGCCCCCGTCGCCGCCATGCTGGAAACCGGCCACATCGCCCTCGTCTGGCAAACCGTCATCGGCCTGGCCTGGTCCGTGCTGGGCCTGTCCGTCGGCGCCATCTCCCTACTGCTCATCATGATCCACCGCGGCGCCGTTACCCGCGTGGCCAACCTGTTCTACCTCGTGCCCCCCGTCGTCGCCGTACTCGCCTGGCTGCTGTTCAACGAGGCGCTAAGCGCGATACAAATCACCGGCATGGCCATCGCCGCGGCCGGCGTGGCGCTCGCCAGCCGAGCCGGACGCTGAAACCCCGCCAAACGGATTACCGCCCGCGACCCTTTTTTCAACCGGCCGCCTATATCTTTGATAATCAATAAGTTAGCGAACGCGCTCAAAAAGGGTTATTCTGAGAAGAATAGCGATAGCTCTTTCAAAACATGGATTTATCGTTTTAATCTTCTA # Right flank : ACCGCCGTGCCCCTCAATCTCGTCCTAGCTGAAGTTAGCTGCTTCAGCCTGGCGATTTGCGCAATGTTTTCCGGATATTTACGTTATTTATTTCGGGGGACACAAGTCGGGGGTTTGGCGTGGATGATCTGGCACCAGGCGATCTGAAAACGATACTGCATTCCAAGCGGGCCAATCTTTACTACTTGCAGTATTGCCGGGTGCTTGTGAAGGGCGGCCGTGTGTCCTATGTCACCGACGAAGGACGCGAATCGAAATACTGGAATATTCCGATCGCCAATACGACTTCGATGCTGTTGGGCACGGGCACGTCCATCACCCAGGCCGCCATGCGCGAGTTGGCCAAAGCCGGTGTGCTGGTCGGGTTTTGTGGTGGCGGCGGCACGCCGTTGTTTGCGGCCAATGAAGTAGATGTCGACGTGGCGTGGTTGTCGCCACAAAGCGAATATCGGCCAACGGCCTATTTACAGCAATGGGTGAGCTTCTGGTTCGACGACACA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCTGCCGCGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCGCTGCCGCGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 46781-49079 **** Predicted by CRISPRDetect 2.4 *** >NZ_AYKG01000069.1 Salinisphaera japonica YTM-1 contig9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ============================================================================================================================================== ================== 46781 28 100.0 32 ............................ GACAGCGTCACGATCAACGTCGGCGACACCAG 46841 28 100.0 32 ............................ ATACATCGCACCATAGGAACTGTCAATGCCAA 46901 28 100.0 32 ............................ GTGCGTTGTTCGAGATCAAAGGACGGCACAGC 46961 28 100.0 32 ............................ GTACAGATCCTGATCATTCGCGTATGCCGTGA 47021 28 100.0 32 ............................ AACAACACGCGACGCAGCAGCGAGGCATCGGA 47081 28 100.0 32 ............................ TCGATCGCCGTGATCTTGGTGTCGCAGATGAT 47141 28 100.0 32 ............................ AACGTGGATATCGAGTCATGAGCAGCATCAAC 47201 28 100.0 32 ............................ ACTGATCGTACGGCCGGTGTTTCGGTCCATGC 47261 28 100.0 33 ............................ GAGATCCAGGCAACACACCGGACGCGCCTGGAG 47322 28 100.0 32 ............................ TGGCATACCGTCCACTGCCCACTGCCGCCAGA 47382 28 100.0 32 ............................ ATAGCGCTACAACGCACGCTCTTGCCCTGCGT 47442 28 100.0 32 ............................ GATCGGGACAGCTTCGTCACCGTCGTGTAAAT 47502 28 100.0 33 ............................ GTCTGGCCGGCTGTTGGGCTCGAAATACTGCGT 47563 28 100.0 32 ............................ GTCCGGCAGCTCGGTGCTCACGTAGCCGAGGA 47623 28 100.0 32 ............................ TTCGTGGCCGACCTTCGCGCCGCTGCGCCGCC 47683 28 100.0 32 ............................ CTTGTGATCGAGCGCTCGGGATCCACGGCCGT 47743 28 100.0 32 ............................ ATCCTCGGGCCTCCGGGGCTGGATCAAGGAAA 47803 28 100.0 32 ............................ AGCTGGGTGAGCAGTTCTGGCCGACGCGCGAT 47863 28 100.0 32 ............................ ACCACCGCTGCCACCAGCCGCTGGTTTGCAAC 47923 28 100.0 32 ............................ ATCGACGAGCCGGGTTTCTTCCCGCCGTCGAA 47983 28 100.0 32 ............................ AGAACAAGCGCGACGGCCCCATCGGCCCGGCG 48043 28 100.0 32 ............................ GTGGGTGGCTTGCATGGTGGAAGCGCGACAGC 48103 28 100.0 32 ............................ AGGGCCACGACCTCGCGCGCCAGCCGGTCGAT 48163 28 100.0 32 ............................ GGTACGGATTCGCCTGTATCGCGGTGCCATAC 48223 28 100.0 32 ............................ ATCCAGCCGGGCCGGGTGCTGGATATGGATCG 48283 28 100.0 32 ............................ GCTGACAGCCCAAGCGGTGGCTGATCGTGCCC 48343 28 100.0 32 ............................ TGTACGAGCTGCAAGGCCGCGACGTAGAGCTA 48403 28 100.0 32 ............................ ATAGCTCGGGCGGAACACATCAACCTTGCAAG 48463 28 100.0 32 ............................ AACACGCACCGGCATAAAACGCCTGGCGCCTG 48523 28 100.0 32 ............................ ACGAGTCATCCATGTAGCGCTTGTCGCGCTCG 48583 28 100.0 32 ............................ CAGCCGTCTCGTTCGGCGATGTTGGTCATGGC 48643 28 100.0 32 ............................ AGCGGGCGATCGCTCGGATGCTACGCCCGGTC 48703 28 100.0 32 ............................ GCTTTACGGCTCGCTCGTCGCGGCTCATGGCG 48763 28 100.0 32 ............................ TCGATACGGCTCATCGTGACATCGGCGCCGAG 48823 28 100.0 32 ............................ GGAAAGCTGAAAGCCGAGGGCGTGCGCGCCAG 48883 28 78.6 142 .........G...T...T..T..GT... CCGATGATGTATCGGATGTCGGCCGGCCAGCTATTTACAGTTGCGTACACAGCTTGGAAATGGAAGGCAGTTACGATAGGCCTAACCGATTTGGGTGCTGTGCCGCATAAAGCGCGAGGGCGCACTACGCCCTCTCAGGAGA 49053 27 71.4 0 ..CG..G.T...A.G.....G.-..... | ========== ====== ====== ====== ============================ ============================================================================================================================================== ================== 37 28 98.6 35 GTTCGCTGCCGCGCAGGCAGCTCAGAAA # Left flank : ATAGGCTGAACACGCTGATGGCCATGTCCTGGCTGAACGGCATGCGCGATCATTTGACGGTGGAGGCGGTAAAACCTGTGCCGCCAGACGCCCGGCATCGTACGGTCAGGCGCCGACAGTTCAATACCGGCGGGCCCAGCCGCATACGTCGCTACGCCAAACGTCATGGCGTATCCGAACACCATGCACGAAGCCTTATGGCTGGCCCAGCGGATCGGAAAATCACCCTGCCCTTCATCCAGATCGCGAGTCGCTCAACCGGTGAACGCTTTGCCCTGTTCATAGAGCACGGCAACCTGCAGCGCGAACCAGTCGATGGCACATTCAATCACTACGGCCTCAGCCAGCAGGCCACCATCCCATGGTTCTGACCCTTTTTTCCGACGGCTATTTACCCGTCGGAAAATCAACAACTTATATAGGCACCATAAAAAAGGGTAACTCACCGTGATTCAATCGATTCTCCCTTGGAAACAGGGCGTTAAGAGGATATAGCGCTA # Right flank : AATCGTTGCCGTTTATTTCGACCGGGGTGCGGGCCGCTTGTTGAGGGCCCAAAGATTTTAAAGCGGCTGAGTCGCTCAGCCGTTGTCCGATTCCGCATCGCCGCGTCCGAGGGCCAGGCCGACGGAGACGGTCAGGGCTTGGGCGAGGCACATAGAGGCGGTCAGGGAGCGGAAGTTATGGAGTTCGGCGTCGTGTATTTCCAGGCATACGGTGGCGTGGGCGGCTACGGGGCTCAGGGGGCTGTCGGTGAGCACGACGATCGGGACGTTGTGCTCATCGGCGCGACGGATGACGTCGGCGGTTTCTTCGGCGTAGGGATGGAAGGACACGGCGAACAGGACGTCGGCGGCGTTCATGCGCACGGCCTGTTGGCCGAGCATGCCGCCCAGGCCGTCGAGCAGAACGGCATCGGCATCGATCTGGCCGAGTGCGTAGGCCATGTAGGCCACGACGGGAAACGAGCGACGCTGACCGCAGAGGTAGATGCGCTGTGCGCCGG # Questionable array : NO Score: 5.92 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.26, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCTGCCGCGCAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCGCTGCCGCGCAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //