Array 1 212544-213670 **** Predicted by CRISPRDetect 2.4 *** >NZ_NLIT01000002.1 Escherichia coli strain MOD1-EC5666 MOD1-EC5666_2_length_240865_cov_39.2071, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 212544 29 100.0 32 ............................. GCAGCAATTGCCGGAGTTTTACTAATTGCCTC 212605 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 212666 29 100.0 32 ............................. TGCGCCGTAGCGTGTCCACCTATTGTAGTAAA 212727 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 212788 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 212849 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 212910 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 212971 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 213032 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 213093 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 213154 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 213215 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 213276 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 213337 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 213398 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 213459 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 213520 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 213581 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 213642 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 19 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATGGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 229172-230604 **** Predicted by CRISPRDetect 2.4 *** >NZ_NLIT01000002.1 Escherichia coli strain MOD1-EC5666 MOD1-EC5666_2_length_240865_cov_39.2071, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 229172 29 100.0 32 ............................. CCAGTGGAGCCGCCGCGAATTTACACACGATT 229233 29 100.0 32 ............................. ATATTCAGTCTAATGAAGCGCCATAATATTGC 229294 29 100.0 32 ............................. AATTTCTGGAAAAAAACAAATTCAAAAAATTG 229355 29 100.0 33 ............................. TTCTGCTGCTGGTTTGAAGAGGCGCTGGCACGC 229417 29 100.0 32 ............................. CAAAAAAATAGATTGGAAAACATTTAGATTCA 229478 29 100.0 32 ............................. TGACTGCGGTTCAAAATCTCCGGCACACGTCC 229539 29 100.0 32 ............................. GCCGCGCCGCACTGGCGCTGGCACGGTATGCA 229600 29 100.0 32 ............................. CCCTCACGGGCTATTTGGTTAATCGAAAATTA 229661 29 100.0 32 ............................. CCAGCCCTTGTTAACGTCTTCGCCGTTCGGGT 229722 29 100.0 32 ............................. GCCGTCATTGCCCGTTGAGATACCGCCCGGAT 229783 29 100.0 32 ............................. GCAAGGCGAGCTATCGCGAAATCGCAGCCCGC 229844 29 100.0 32 ............................. CCACCACCGCCCCGACACCACATATAGTAGCG 229905 29 100.0 32 ............................. GAAGTCATGAAGACTTCGACTATTTCTTGATA 229966 29 100.0 32 ............................. GCTGTTTGTAAATTTAGAATTGCTGACTGAGC 230027 29 100.0 32 ............................. GAGAAAAATGCTACAAAAATGAGCTACGAAAC 230088 29 100.0 32 ............................. CCATAATCAAAAGCGGCCAGAACTGCCATTTC 230149 29 100.0 32 ............................. ACAAAACGCGATCAATACAGTTTTGTTTTGCA 230210 29 100.0 32 ............................. GGGATGAAATTGAACTTCCAGGCGACCGACAA 230271 29 100.0 32 ............................. ATTGATAACTCGCGCTCATCCATTTTGAATTA 230332 29 100.0 32 ............................. GATTTTTCGCGAACTATCCCGGCGTAATGCGG 230393 29 100.0 32 ............................. AAAATTCCATTTTATTACTGTCGGCAATTTCG 230454 29 100.0 32 ............................. GCATATTTCATGCAGCGTTCTGAATGAGTAAG 230515 29 100.0 32 ............................. GCGTGGCGCGGGGCGTATTCCCCGGCGAGTAA 230576 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 24 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCCGGGAAGGCAGGTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //