Array 1 63429-62728 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAXYQ010000135.1 Acidithiobacillus sp. CV18-3 Contig135, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 63428 29 100.0 32 ............................. CGTTGCCGCCCTTACTGCTCGAGGCGTTGGAA 63367 29 100.0 32 ............................. GATTGACGCCTAGCGCTTGTGCTGTTGATGGC 63306 29 100.0 32 ............................. TGTACTGATGAATAACGGGTTCAACCCGCAGA 63245 29 100.0 32 ............................. CATGGGAATTAGCTGCATACGGCACCCGCCCA 63184 29 96.6 32 ............................T TCTCGTGAAGGTGGCTACACTTGTGTAAGTCC 63123 29 100.0 32 ............................. TTCTGCGACGGATTGTAGGGATTAACGCCTAG 63062 29 100.0 32 ............................. CTGTTCCACTAGCCCATCAGCGGATGTGCCTG 63001 29 100.0 33 ............................. CACGGCTATATCATAAAAACAAAAAAGGGTGCA 62939 29 100.0 32 ............................. GGAAACTACACGGTTAACATAGGCGACCATCC 62878 29 100.0 32 ............................. CAGAATCAGCCATCGCCAAGGCCGTAGGCAGG 62817 29 96.6 32 ............................T ATATCTAACACGATACAAACCCCAAGTGGGCC 62756 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 12 29 99.4 32 GGGTTCCCCGCGCGAGTGGGGATGAACCG # Left flank : GCCATATTGCCTTGTTGCAAATACGAGGCT # Right flank : GTCACCGAGGACAGATGACCACCTCTGATTATGGATTCCCAAAGACTTCTTGGCCCGAAATATGGGCCAAGGCCAAGGATGAAAGCTATACCAGAAAACGACGTCCGACGTTGAAATCTGGTATAGCTTTCTCGCCGAAAACAGGATGCGCCAGAGCAAAAATTGGTGATGCCCTGACCGCAACCGTCACACCGACCGCGCAAGCTGGAAGGTGGGGCTGGGCGCGGGAATCGCCATCACCGGGGTGTCCAGAGGGGGCTTGCCCCCCTTGGCCTACGTGACGTAACGATAGTTACAGCTAGTAGGTTATGCCTTAAGGCGCATCCCAACCTACCGGGCAACGCGAAAACAGGCGTATCCTAGGGGCAGGCGGAGCGTCGCCCGACAGGCCGGAAGCCACCCCTGCAAGGCAACCGTCGCGACCGCTGAAGGCTGGGAATGACCGGGCGCATTGCTGATGGCGAAGGCCGCAAGGACCGGCGCGAACTCGAGGTTCTCCC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGGTTCCCCGCGCGAGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCGAGCGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.40,-11.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: F [50.0-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 16293-18279 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAXYQ010000192.1 Acidithiobacillus sp. CV18-3 Contig192, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================== ================== 16293 29 100.0 32 ............................. TAGTGGACGCGGCTGGAGAACTAACTTCAACC 16354 29 100.0 32 ............................. GAGCCATGCGTCATAGCCAATGCCAGCGGTCC 16415 29 100.0 32 ............................. GCAGCGGCTCGCTTGGGTTTGCCGCTGTGCCG 16476 29 100.0 32 ............................. CTGGCAAGCGTTCTGTTGCCTGTTCTAGATCC 16537 29 100.0 32 ............................. GTGCCATCGGGTACAACGGCAGTGGTTTTTGA 16598 29 100.0 32 ............................. CAATCCATATCCCCTGACGGAAAATCGCTCAC 16659 29 100.0 32 ............................. GCGGCAAACTCCGCGTCCGGCTCGGCTATGAC 16720 29 100.0 32 ............................. CAGCACTGACCGGGACATCAGATCCATCTTGC 16781 29 100.0 32 ............................. AGCTAAAAACGCCTTGGGGTCGATCATACATT 16842 29 100.0 32 ............................. GTGTCAATTCCGAACAGCCCCCCGGCCATGGA 16903 29 100.0 32 ............................. TTCTCCCGTCCATATCGAGCACGGCCTGCTTT 16964 29 100.0 32 ............................. ACTCAGATCGCGTACTTGACTAAGGCGTTAGC 17025 29 100.0 32 ............................. CGTCACCAGCAGTGCGTCAATGACCGTTGCCA 17086 29 100.0 32 ............................. AGGAATATTGTCGCTTGGCATCTGTATCTCCC 17147 29 100.0 34 ............................. CAGCAGGAATGGAGTACCCGCCGCCGTTATTCTC 17210 29 100.0 32 ............................. GGATTTTACGGTGGGCTGGTATTCCTCACCGA 17271 29 100.0 32 ............................. GAAGGATACGAATACGGGTACCAGAGCGCCAT 17332 29 100.0 32 ............................. CCACCCTTGCTGCGCTTCTTGCCCAAGTCGCG 17393 29 100.0 32 ............................. GTTTCACTTTTTACGTCGTCCTTGTGTATGCC 17454 29 100.0 32 ............................. CATCAGCCGGTGCTGGCGTCTGATTATGCGGC 17515 29 100.0 33 ............................. TACGCTCCCATGAGTAGGCAGGAAACCGCTGAT 17577 29 100.0 32 ............................. TAGCTGGGCGTGGCAATAGTGAAAGTGCCGCC 17638 29 100.0 32 ............................. ACACGAAAAACTGAAGATCTAATGCCGCCATT 17699 29 100.0 32 ............................. TATCAAGCGACATTGCGAAAAACCGCAGCTTC 17760 29 100.0 32 ............................. CGATGCCGCATATGCCTCGCCGTTGCCGTTGT 17821 29 100.0 32 ............................. TAGCATTCGCCAGCCGCGATCCGTTCTATGGC 17882 29 100.0 32 ............................. TGGTGGCATCAGTCTATGCGTGGCATACCGTA 17943 29 100.0 35 ............................. AAGTTTTATTGGCGCAGTATAGACGAATATAAAAA 18007 29 100.0 32 ............................. CGGACCAGACAGAAAACCGCTGGTATACATGC 18068 29 100.0 32 ............................. GTATCCATCCCCTTTTTAACCGCCTCCTGCGC 18129 29 100.0 32 ............................. TCGCATTCGTCGGCCCGGGCGCTGCGTTGTGC 18190 29 100.0 32 ............................. TGCCATATTGCCTTGTTGCAAATACGAGGCTT 18251 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= =================================== ================== 33 29 100.0 32 GGGTTCCCCGCGCGAGTGGGGATGAACCG # Left flank : ACGCTTGCTGGAGCGTATCATCCCTGGCATAGAAGACATGCTTGCGGCAGGTGAAATCACGCCACCAGAACACTTTAAAGAACAGATTGGTCCCGCCATTCCCAACCCGGAGTCTATTGGTGATGATGGTCATCGTGCTTGAGAACACCCCTGCGCGGCTGCGCGGACGCTTGGCCATCTGGCTGCTTGAAATCCGTGCTGGAGTCTATGTTGGAAACTATTCTTCCAAGGTGCGCGGCTATATCTGGAGCCAAGTGGAGGCTGGCATTGGCGATGGAAACGCTGTCATGGCCTGGCGAGCGAACAATGAAGCTGGTTTCGACTTCATTACAATCGGTCAGAACCGCCGTACCCCTGCGGAGATGGACGGTGCGAAGCTCGTGAGTTTTCTGCCGCTGGACGATCAAAATGCTCTTTGACAATTTGCGCAATCAAACCAAAAAATCGGTAGATTTTGGTATTGTTATTTTTCTATGGTAATTCATAATATTGCAAGAAGA # Right flank : CGTTGCCGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGGTTCCCCGCGCGAGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCGAGCGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.60,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [75.0-3.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //