Array 1 2733-2945 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOFD01000002.1 Streptomyces griseus subsp. rhodochrous strain NRRL B-2930 contig2.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 2733 30 93.3 31 ...........T.................G TCCGGATCACGGCGGCGGGCCGCCGCCGGGC 2794 30 96.7 31 ...C.......................... TTCCCGGGCGTGAGCGCTGGACCCGGCAGGC 2855 30 100.0 31 .............................. ACAGCGTGAAGACCGAGCGGTAGCCCGTCGC 2916 30 66.7 0 ..A.........TGT.......G..GGGTG | ========== ====== ====== ====== ============================== =============================== ================== 4 30 89.2 31 GTGGTCCCCGCGCACGCGGGGGTGGTCCCC # Left flank : CCGACAAAATCCCACCCCACCTCCCCACGACGACAGAAGCCCGATCGCCGGACACCAAGGAACCAACCCACGAAGCGCTACTGGTCGAATGCACCAACTGCCGCCGCCCAGGCCCACCACAAGCCCTCCCCGACGGCCTCTGCCACCCCTGCCACCACGCCCACACTCACGACGGCGACCCCACCACCCCCACTCCGGACGAGGTCGCCGCCGTCAAAGCCCACATCGCCAACCTCCGCAACCTCCTCAAGCCCGTCTAACCCCTGCCCCACGGCTCCCGGTTGGGCAGGGCAGAAACGCCGCATCCCCAGGACCAGCCCCACAGAGAGCAGAACCGCAGCCCACCCGCCGAAGCCAGGCCCAGATAGGACCGGCGGCGGACAGAATGAGCATCAGCCGAACCACACCTGACCACTTTGCGACGGAAGGCGAGATATGCCGGTTCCTCAAGAAGTAAGCAAAAACCGCCTTCCCGCCACCTAAACCCCCAGGGCACGAAG # Right flank : GCCCCGAGCGGCCCGGGGTCCACTTGGCCCTGACACTGCGCGCCTGCTGTTCGCGCGACCCTCCCCCGGCCCGCAGGCATCTGCCGCCTGCCGAACGGCAGAGCGCCCGGTCGCCGTACGAGGGGTACGGCGACCGGGCGCTCCGGTTCCACGGGTCAGGTCGGGGGAAGCGGCATCGGGGGGACAAGCCGCTTCCCCCGGTGGGAACAGCGCCTGCGGTCGGTCGTCGCGGTCAGGGGGAATCGCGCGGCGGGCCGACCCCACAGAGAGGCCCTGTTCCGGCCTTCCGGGTCCTGCCAGGTCCCGTCGGGCTCGGTATCCATGCTGCCGGGCGGGACGGCTCGGCGGGGCGGGCGAAAGGCCCCGATGGCCGGGTCGTAGGTCCTTAAAAGGTGCATCAGTGATCGAAAACAGCCATCAAATGCGGTCATGCGTACGGATAGAATCGCCCGACCGCACATGGGGCCGACGGGGAGGCAGGATTGTGGCCAAGGCAAAGA # Questionable array : NO Score: 3.51 # Score Detail : 1:0, 2:3, 3:0, 4:0.46, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 401182-401758 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOFD01000016.1 Streptomyces griseus subsp. rhodochrous strain NRRL B-2930 contig16.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 401182 29 100.0 32 ............................. TGCGGGATCGGGATACTCTGTTTGGACACGAT 401243 29 100.0 32 ............................. CATCTACGAAGGCCGCGGATGGGACCGCCAGG 401304 29 100.0 32 ............................. AGGCCGACCAGCGGGCGGGTCTCCAGCGCGAG 401365 29 100.0 32 ............................. ACCCACTGGAGTGCCGACTTCACCGTGGACAC 401426 29 96.6 32 .................T........... TGGAGTGGAAGGCAGCCACCGTTCGTCAGTTC 401487 29 100.0 33 ............................. ATCCCGGTGAGGACGCAGGCGCAGACAGCGCCG 401549 29 100.0 32 ............................. GTATCGCGCGTGAAACGGGCGCGCCATCCGGT 401610 29 100.0 32 ............................. GGAATTGCCACTCGTATGCTCGTGGATTACGA 401671 29 100.0 32 ............................. GCCGCCGCCCTGCGGATGCTGCTCCAGGACGG 401732 27 82.8 0 ........--.....A.....T...C... | ========== ====== ====== ====== ============================= ================================= ================== 10 29 97.9 32 GTGCTCCCCGCGCGTGCGGGGGTGGTCCC # Left flank : CGAGCGCGGGCATGCGTGATGGCTCCTGTGACGGACACGGGGACGGCCGACGACCGGGGAGGGGAGAGCCCTGCGCGAGCGAGCGCCGGCGGTGCCCGCGCGATGACCGCGGGCCCCCGGCTGCCGGGTGGCCGAAGTTGACGCGTCGAAGTCTCGCCGCGCACCACCCACGGGGTCGTCCCCCCAGCAGCCGAACCACGCCCTGCCCGAAAGTGCCACACCCCGCCGACCGACACCCCTCGGAAGTGCTACCGCCGGGCATCCTTCTTCTGGCCGATCCTGGCGACCCGGGGGGCGACGGGCTGCCGCCAACAGTCCGGGGTACGACCGAAGCACGGGACAGGGCGCTGGGTGAACTGGCAGGCTGGGAAGCAGATCCCGGGGGGTGCTGACCTCGGCCTACCTGGCAGCCCATTCGAAACTTGAGGCCACATATGCCCGACTCTCAGGAAGTTCCCCAAAACGACCCCTCGGCCGGATAAACCCGCAGACCACGAAGG # Right flank : CTCCACACCCCCGCCCGACTCCACCCAGCCGGGCCCCCTCCCCAGTCGCGATACGTACCCCCACAGCCCCCGTCCACCCGGCAACACCGCAGGTCGCGTGCCCTATGGTCTCCGTTCATGAGCCGAACCACGCCGCCCCGCCCGGTGAACATCGAGGCGCTCTTCCCGAAGCTGGGCGCGTTCCGCGGTACGACGACGCGGCTGCACCCGCGGCCCGGCCGTCCGGACGCGGCGGCCAGTTCGGTCGGCGGCCCCGTGCTGTGGCCGGCCGACGAACCCTGGCCGGTCTGCACCGAGCCGCACAAGCGCAGCAGCGGGTACCGCATCGCGGACGTACGACGTGAGCGCCAGGTGCTCGCGGACGCCTGGGCCCGGGACCGCCCCACCGATGAGGAGCGGGACCTGCTCAAGGAGCTGGGCCGCAGGCACCGGCAGCGCGAGATCGCCGACACCGATCCGATCCCGCTGGTCGGCCTGGCCCAGTTGTATCGGCGGGACGT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCGTGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGTGCGGGGCTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [40.0-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 406038-407226 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOFD01000016.1 Streptomyces griseus subsp. rhodochrous strain NRRL B-2930 contig16.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 406038 30 100.0 31 .............................. AGGGGTGGGGCGACGCAGCGTGACCCCCGCT 406099 30 100.0 31 .............................. CTCGGGCAGGGACGACACGTGCATAGCGATG 406160 30 100.0 31 .............................. GGTACATCACCGTCACCGCGGCCGGCCTCTG 406221 30 96.7 31 .............................G TCTGGCTGATCTCCCCGGTCATGTCGCCGTT 406282 30 100.0 31 .............................. GGATCCGCACCAGCATCACCGTGCAGATCCA 406343 30 96.7 31 .............................G CGGCGGGTACCGGACGGCGGCGGCGGAGGAG 406404 30 100.0 31 .............................. CGAGCAGCCCGTATGCCCCGTGGGTGCGGCG 406465 30 93.3 31 ............................AG ACTCGGCCGTTGCGAAAGCCGGAAAGTAAAT 406526 30 96.7 31 .............................G GCCTACACAGCTACATGGCGGGTCACGAGGA 406587 30 96.7 31 .............................A CTCGTAGGGTTCACCTCCTATATTCCCCCTA 406648 30 93.3 31 ...........G.................A TGGATGTGGCGACGGGCCCGGAGGGGTGGGA 406709 30 96.7 31 ...........G.................. AGCTGGCCCGGCCGGCACGAGCCGATGGTTG 406770 30 93.3 32 .T.........G.................. CTTGCTCCAGCTCACCACCGCAGACGACTTCG 406832 30 90.0 31 .T.........G................A. CCCGGACCCGGAGGTGGCGCCCGTCCCGTAG 406893 30 90.0 31 .T.........G.................T GAATGGACACTGCCTACACACCCCCGGCGCG 406954 30 86.7 31 .T......T..G.................A CCGCCCACACCTCGGCGCAGAGCGGGGCGGA 407015 30 90.0 31 .T.........G.................G TTCCGTCGCCGTTCGTGAAGCACTCGCCGCC 407076 30 83.3 31 .T.........G.......A........TG ACCTCGGCCTTGTAGAAGCAATCCTGTTGAA 407137 30 86.7 31 .T.........G......A..........G CTCTCGGCCTCGGTGAGCAGCACGGCCAACA 407198 29 86.7 0 .T.........G.............-...A | ========== ====== ====== ====== ============================== ================================ ================== 20 30 93.8 31 GCGGTCCCCGCACACGCGGGGGTGGTCCCC # Left flank : ACCGACAAAATCCCACCCCACATCCCCAGGGCGACAGAATCCCGATCGCCGGACGCCACGGAACCAACCCACGAAGCGCTACTGGTCGAATGCACCAACTGCCGCCGCCCAGGACCACCGCAAGCCCTCCCCGACGGCCTCTGCCGCCCCTGCCACCACGCACACACCCACGGCGGCGAGCCCACCACCCCCACCCCGGATGAGGTCGCCGCCGTCAAAGCCCACATCGCCAACCTCCGCAACCTCCTCAAACCCGTCTAACCCCCAGGCGATGGGTCGTTGTTGGGCAGGACGGCCACACCGCACCCCGGGGCCGACTCCACGGAAGACAGAGCCACGCCCCTTCCACCGAAGCCGGGACAATGACACCAGTGGTGCGCAGAATGGCATCAGCCGAACCACACACGTGACCACTTTGCGCCAGAAGGTGAGATATGCCGGTTTCCCAACAACATGGTAAAAACCGCCTCCCCGTCACCTAAACCCCCAGGTCACGAAGG # Right flank : ACGCGCCATCGCTTACGTGAGATCACGGCCTCGAAGCCTGGAAGGGCGGCACCTACGGCCCCTGCTCCGGCGGGTTCCGTGACCATCCGAGCCCCTGCCCGCCGGCCCCGATCCGGCGCTCCGGAAGGCCATAGATTCCGAAAGGCGGGAACAGGTCGACGCGGCGCGGGTAGCCGCCCTCCACGCACGCCCGACACAACAGATCACGGCCCCGATCGGTGTGCCGCACGGCAGTCACCGGAGCGCGCCAACATGCCTCGCACGTGCGGACATCCGTGGTCGACAGATCGGGGCTCATCCAGCACCCTCAAGCGCAGTGGCCCCCTCGTGACACGGACAGGCGCACGTCGGCAGACGGCACAGGGCGTGCACACCGGCCAGGTCTGTCACCAACGCGCTGCGACACACCACGCTGCACGGCCCGTCCGCACCGGCCGTCAACGCGTCCAGCGCTACAACCGGCTCCCCGGCCTCATCGCCCCCGGTGATCGGATCACCTC # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.69, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.36, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCGGTCCCCGCACACGCGGGGGTGGTCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-22] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 410511-411457 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOFD01000016.1 Streptomyces griseus subsp. rhodochrous strain NRRL B-2930 contig16.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 410511 30 93.3 31 .......T.....................G ATGCGTTGCTCGGTGACGACGCGGTTCGTCG 410572 30 93.3 32 .......T.....................G ACCCCGACGACACCCTCACCAACCAGAGAGAC 410634 30 96.7 31 .............................A TGGTCCGCGACGCCAACCGGTCACTGAACAA 410695 30 100.0 31 .............................. GCTCCTGCTCGCTCTCCTCGCCCAGCGGGCC 410756 30 96.7 31 .........................C.... CGCCGCAGGCCGCCGCGCACACCTTCCGCAT 410817 30 96.7 31 .............................T GCGACACGGGGCTCCCGGCCGCCGACCCGGA 410878 30 100.0 31 .............................. AGCGGGCGCACTTCGAGCAGCGCCAGGCCGA 410939 30 93.3 31 ...............C.............T ACGACGTGCCCGGCGATGACCTCCCGGACTA 411000 30 96.7 31 .............................T TCGCGGCCTCTTCGATCCACACGATCATGTA 411061 30 96.7 31 .............................A CCGGGATGATCATCCCGAGGATTTCCGGGAG 411122 30 96.7 31 .............................G GCACGTTGCCGACGGTCAGGTCGAAGGTGCC 411183 30 96.7 31 .............................G GGTCGAGCGGGACCGCCAGCTCACGGCGATG 411244 30 100.0 31 .............................. ACTTCATGACCTCGCGGACGGTGGCGCCCTC 411305 30 96.7 31 .............................A CGCTCACCATCGGGGAAATGGCCCGGCATCT 411366 30 86.7 31 ............AT...........C...G GCGGCAGTGATCGGCGTACCTGTACGACGGT 411427 30 80.0 0 ...........C.GT...C..C.......A | G [411440] ========== ====== ====== ====== ============================== ================================ ================== 16 30 95.0 31 GTGGTCCCCGCGCACGCGGGGGTGGTCCCC # Left flank : TGCGTCGAGCGCGGGTTGAGCTTCGACCGTGGCGCCGGGAGGACTTCGTCGCCGACCTGGACGATCACTTGATGGACATCCTCGGGGCCTGACGACGGGCATCGCTCACTGCTTCCTGGCTAGTCCCTGGCAGGAACGACGAGTTCCTTGAGCCGCCGAACCTCCGACCAGGAGTCGCGGGCACGCGGGCCCTGGGGGCGCGGGCCGAGCCGGTCGGCTCAAGGCACCGGTAGTGGTCGTCGTAGTCGAAGACCTCACTGATGTCGGCCACCAACGTGTTCGCACAGCGAGCCCAGAACACAACGCCCCTGGCCGACACCTGCGGAGGGCCGGTCCGCTTCACTTCCACCGAAGCCCGGCCGACGAGATCGACGGCGGGCAGAATGACATCAGCCAAGCCATGCACATAAACCCTTTGCGACAGAAGGTCGGATATGCCGGTTTCCCAAGAAGTGAGTAAAAACCGCCACCCCGCCACCTAAACCCCCAGGTCACGAAGG # Right flank : ACGGATGTTCGCGGTGCCGCTTCGGCCGTCCCGTGTTCCGTAGCCGCCCCCGGGCACTCGGCGCGACACCGGGCCGCCCTCCCAGTGCCCTACGGAGAGGCTCCCCGACCGCTCAGCCCAGCCCCTCCTCCACCAGGGTCGCCCACTGCGCCACCACCCGGGCCCGGCGGGCCGTGTCGTCGGTGAGGAGGTTGGCGAGGCCCAGGCCGCGGGCCATGTCCAGGAGGCCCTGGACCGTTTCGCGGGCGCCGGGGCGGGACTCGTCCGCGCCCAGGAGTTCGACCGCGATGCGGTGCGTCTCGCGGCCCACCCGCGCCTCCAGTTCCGTGACGCGTGGGCGGAGCTGGGGCTCGTTGGAGGCGGCCACCCAGAGGTGGAGCGCGGCCCGGAAGAGGGGGCCGGTGTAGAGGTCGACCAGGGCCGCGACCACCTCCGCGCGGCCCTGGACGGGGAGCGCGCGCAGGGCCGCCGAGCGTTCCTCCGCGACATACTCCACCGCC # Questionable array : NO Score: 5.30 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.29, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 7918-8324 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOFD01000042.1 Streptomyces griseus subsp. rhodochrous strain NRRL B-2930 contig42.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================== ================== 7918 30 93.3 31 ............................CG TCACCCGGCCGGGAAGCGCGGTGATGAACCT 7979 30 100.0 31 .............................. CGGGGATGCCGTATACGGATATCTCGCGGGC 8040 30 93.3 31 ............................CA CCTGCTGGATGCGGGCCCGCAGCTCGGGCAC 8101 30 96.7 31 ............................C. CGGCGACGGTGCGCCCCTGGTGGTTGGTCAC 8162 30 90.0 42 ................T...........CG GGTTCGCCGTGCCGTAGTCGACCCCGACCCAGTGCCGGCGCA 8234 30 100.0 31 .............................. CTCCGTGGCAACCTGACCCCACTCACGGCCT 8295 30 86.7 0 ...........T...A.........C..C. | ========== ====== ====== ====== ============================== ========================================== ================== 7 30 94.3 33 GTGGTCCCCGCGCACGCGGGGGTGGTCCTT # Left flank : CACCGACAAGATCCCGCCCCGCCTCCCCGGGGCGGTGGAAGTCCGTTCGCCGGGCGCCACGGAACCGATCTACAAAGCCCTCGTCGAATGCACCAACTGCCGCCGCCCAGGCCCACCACAAGCCCTCCCCGACGGCCTCTGCCGCCCCTGCCACCACGCACACACTCACGGCGGCGAGCCAACCGCACCCACCCCGGACGAGATCGCCGCCGTCAAAGCCCACATCGCCAACCTCCGCAACCTCCTCAAACCCGTCTAACCCCTGCCCCAAGAACCCCCGTTAGGCAGGACGGACACACCGCATCCCCAGCACCAGCCCCACAGAGAGCAGAACCGCAGCCCACCCGCCGAAGCCAGGCCCAGACAGGACCGGCGGCGGGCAGAATGAGCATCAGCCGAACCACACGTGACCACTTTGCGACAGAAGGCGATATATGCCGGTTCCTCAAGAAGTAAGCAAAAACCGCATTCCCGCCACCTAAACCCCCAGGTCACGAAGG # Right flank : TGCGCCCCGAGCGAAGTGGCAGGTCACACCCCGCGCGGGTACTCCCCCTTCCCCGTCCCGATGATCCCGCCCGGGTCCCGCAACCACACCTGCTGACCCCGGTCGGTCACCGTCAACCCGAACTCCTCCGCACCAGGGCGACCGGCCGACTCGTACTCCCACCAGGTCTGCTCGATCTCCTCCCACAACAGCCCGATCCCGTACTGCCACACCTCCTCTCCCGAAGCCGTCGAAGCGCCACCGACCTCGCTCGTCACCCACACGCGCACCCCGCCACCGGCGACACTCTGGTGAACCATCCGCACACCGGGCAGTCGCGCCCCCGCGAACAACGCGAACCCGAGGTCCAGCAACCGGGCCGGGTCCAGACCGGCCGCCCGCGCTCGCCCCCTCCCCCGTACCTCATGCAGATCGGGCACGCGGTGCGAGCGCATCGGCATGTACGTGGCCCCGCCGCAGAACGGCCCGACCGCGCTGCCGTCCCCCTGAACCCGTAGCCG # Questionable array : NO Score: 5.53 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCTT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 13610-13761 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOFD01000042.1 Streptomyces griseus subsp. rhodochrous strain NRRL B-2930 contig42.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 13610 30 100.0 31 .............................. TGCACCGTCGCCAGGCGAGCGCGCAGGACGA 13671 30 93.3 31 .........................C...G AGCGCGCGGTATCGTAACAGGGCTCGGCCGA 13732 30 90.0 0 ........C...................GT | ========== ====== ====== ====== ============================== =============================== ================== 3 30 94.4 32 GTGGTCCCTGCGCACGCGGGGGTGGTCCCC # Left flank : ACGTCACGGAGTTGGGCAAGCTGGGCGGGGTCGGTCACTCGCTCGCCCTGAACGAGCACGTCGGTGGAGCCCTCAACCTCGTAGAGGGTGGGGCCATCCCCGTCGTCACTGGTGGTGCCGAGAAACCTGAGAACCGTCATGACGCCCTCCGCGTGCACTGAGTGGAAGTCCAAGATGTGATGGATGGTGAGGGGGTGCCGCCGGATCGCGGATGGAATTGCAGATCGCTCAGGTGGCCCGGGAGTTGAGCGCGGCCAGCAAGGGCGGCCCGGACAAGCGTAAGCAGAAGGGCTACCACGCACACGCCAGGTACAACGCATACGGAGCACGGCGCCCCAGCTCTCACGCTCAAGCCGGACCGGCCGAATCAGCGCCAGGCACAATGACACCAGCCGCACCGCACATGCGTGAACGCTTCACACGAAAGGCGAGAAATGCCGGTTTTCCAAGAAGTAAGCAAAAACCGCCGGTCCGCCACCTAAACCACCAGGTCACGAAGG # Right flank : TCGAGCGACCCGCCGCACCTGCCCCCGGCCCGGGAGCGTCCAGGCGCGGCCCGCCCGAGGCCGCCGCCCTCGCCCCCGGAGCACCGCCCCTACGCTTCCGACGTCCCCGACACCGCCACCCGGAACCCCACCCCGATCGCCGCCAGGTCCTCCTCGTACGCGCCGTGGCGGCGGGCGCAGCGGGCCAGGTCTCGGTCGTGGCGGAAGGCGCCGCCGCGGGTGATGTGGGGGTCGAAGGCCCAGTCCTCGGTCTCCGGGACCCTGGCGGGCGCGCCCGGGTACGGGGCGTAGAGCGTGGACGTCCACTCGTCGGCGTTGCCCGCCATGTCCAGGACGCCGAACGGGCTCGCGCCCTCCGGGAACGAGCCGACCGGCGTCGTCGTGCCGACGCCCAGGTCCACCAGGTTGGCCAGGCCCGTGCGGTACTCCTCACCCCACGGGAACTCCCTGCCGTCGTCGCCGCGCGCGGCACGTTCCCACTCGTCCTCGGTGGGCAGGCG # Questionable array : NO Score: 3.89 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:-1.5, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCTGCGCACGCGGGGGTGGTCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.80,-6.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-15.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 4557-4830 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOFD01000052.1 Streptomyces griseus subsp. rhodochrous strain NRRL B-2930 contig52.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 4557 30 100.0 31 .............................. CCGCGCGCCTGCATCCGAAGACGGCTGAGCG 4618 30 100.0 31 .............................. CCAGCTCGACCAGGATCAGCCGCTCGACCAG 4679 30 96.7 31 .............................C AGGTCACGGGGGTTGTGCTCCTGTCGGGGAT 4740 30 96.7 31 .............................A GGTCCTGCCAGTCGGTGAGGGGCCGGACTTG 4801 30 76.7 0 .....................TCAACAG.. | ========== ====== ====== ====== ============================== =============================== ================== 5 30 94.0 31 GTGGTCCCCGCGCACGCGGGGGTGGTCCCG # Left flank : CAACCGGGAGGTGTACTACCCGAACTGGGCAACCGCCGAGCCGGGCGAGCACGTGGCCGACGTCGCCATCCCCTTCCGCAGCGTCTCGATGCCCGACCTCTGAAAGTCAACCGACGACGGGCGACACACACCGCAGGTTGCAACCGCCGCCCTGCGCAAGCACCTCGGGAGACCGCCATACCGGCCCCGAAGGAATAGCCGCGCCCCAAGCGCACACCATCAGCCTCCGCCACCCCCTCAACCCGTCGAACCCGTCGAACCCCAACCACGAAGCCCCTCCCGAAACGGGGTAGGCACACCGCACACCGGGGCCCAAAGCCACGAAAGACAGAGCCGCACCTCTTCCATCGAAGCCGGGCCGATGAGACCGGATGGTGGGCAGAATGGCATCAGCCGAACCACACGTGTGACCACCTTGCCCCGGAGAGCGAGATATGCAGGTTTCTCAACAAGTTAGCAAAAACCGCCTCCCCGCCACCTAAAACCGCAGGTCACGAACA # Right flank : GCGAATGGTCGCGCGGCTCGCACCGCTGCCTGGACGAGGAACAGCCCAACCGGTCAGTACGTTTGGTCGTCTCCATCGTCATCCCTTGCGCGTTGGGCGTTGTGTCGGATGTGTGCGTGGTGGGCGTCGCGGAGGGGGTCGGTGATGTGGAAGCTGTGGTTGCCGGGGTGGTCCTCGTACAGTCCGCACGCCCGCACTCGTCGCCCACAGGAACCACAGGCTCGCGGGTGGTTCGGTCTCCGCGGTCCACAGGCGGGACGCGTGCTCGGCGGTCTCGTCATGCTCGCCCAACTCGCATAAGACATAGGGCTTGTCTTCGAGGAGGTCTTCGGCGTCGTCGGGGCCGTCGTCCATGGCGAGCAGGGCGGGGAGTGCTTCGTCGGGCGGGAGGTTGGTGATGGCGGTGCATTGCAGCACGGGGGCGAAGGTCCCTCTCGTGGAAGTCCGTGGAGGCCGGGTCGGATCGTGCGAAGTCCCGCCCGCACGCGCACAGGGGCGTG # Questionable array : NO Score: 5.68 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 8237-8388 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOFD01000052.1 Streptomyces griseus subsp. rhodochrous strain NRRL B-2930 contig52.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 8237 30 96.7 31 .............................G ACACCGAGCTACGCAAGAGCATCACGACGCA 8298 30 100.0 31 .............................. ACGGCAACTGCGTCGAACTCGCCCAGCTCCC 8359 30 93.3 0 .CA........................... | ========== ====== ====== ====== ============================== =============================== ================== 3 30 96.7 32 GTGGTCCCCGCGCACGCGGGGGTGGTCCCA # Left flank : CTACGGGGCGCCCGCAGTCGAAGGCCGGGAGTGGTGGCGCGAGAGCCTGGATACGCCGCCGGAAAGGTCTCGGACCTTCTCCTACTCCGAACTGGCCGTCCACCCCGAGAAGCGGAAGCAGGGGCTGGCGGATGCCCTCTCACGGGCTCTCCTGGCCGGGCGGCCCGAGGATCTCGCAGTCCTCCTGGTGGACGTCAAGCACCCCCGCGTGCAGTCCCTGTACGAGGGCTGGGGCTTCCGGAAGGTAGGGGAGCGTCAGCCCTTCCCGGACTCGCCGGTCTACGCCGTGATGCTGGCCGACCTCCCGCTTGACGAGAGCCACGGAAGGTAGAGCCGCGCCTCTCCCATCGAAGCCGGGCCGATGAGACCGGATGGTGGGCAGAATGGCATCAGCCGAACCACACCTGTGACCACTTTGCCCCGAAGAGCGAGATATGCCGGTTTCTCAACAAGTTAGTAAAAACCGCCTCCCCGCCACCTAAACCCGCAGGTCACGAACA # Right flank : AAGTCGACGCACTGGAAGTAGCTGGGGTACGTCGTGGCCCCCCAGCACGCGGGTTCCCCCGCCACAGCGGACGGCCGCAGGCAGGGCAGGCACCGCCGTACGCGGTGGAGGCTGCCCCTCGCCGCCGCCTACGAACGGGACCGGCGGTCGCCCGTACGTCACCGCGCCCAGCGGACTACGTCGCAGGTACCGGTTGGTCACCGTCTTCCGCCTGATACGCCCCCGGGGCCCGCTGGCTAGCGTCGTCCTCATGCGTATCGGACTGCTCGGCACCGGAAATGTCGCCCGCGCCCTGGCCCACGGCTGGCGCGCCGCAGGGCATGACGTCCTCCTCGGATCGCGCCACCCGCAGGAGCGGGGTAACCTCGGTCTGCCCGTCGCGGGGCTCGGCGAGACCGCCGCTCGCGCGGACGTCCTGGTCAACGCCACCCCCGGTGGCGTCTCTCTGGACCTGCTCCGCTCCATCGGAGCGCCGGTCCTGGCCGGCACCCTGCTGATCG # Questionable array : NO Score: 4.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:-1.5, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //