Array 1 67308-68880 **** Predicted by CRISPRDetect 2.4 *** >NZ_FRXO01000007.1 Pseudoxanthobacter soli DSM 19599, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 67308 32 100.0 36 ................................ TTTCCCCCAGATGATTGTGCAGCGCGGGCAGACGAG 67376 32 100.0 36 ................................ CCGATCTATGCGCCGACGGCGGCCGAACTGGCGATC 67444 32 100.0 36 ................................ ATCAGATCAGCCCTTCGATGCTTTCGGCAATCGGCG 67512 32 100.0 35 ................................ GCCGGCCCGGTAGTCCGTGATTGCGATCTTGGCAG 67579 32 96.9 35 ....T........................... GCTCGGCAACAATGACAAGCCGAGAGAGCTGACGG 67646 32 100.0 34 ................................ TGGCCGCACTACGAGCGCGTCACTGGCGACGTAG 67712 32 100.0 34 ................................ CGTAGGGCAGACAAGATGGCCGGCAGGGAACGGC 67778 32 100.0 35 ................................ CTCCCGGCGCCGCCACCTGCCCGCGCTGCGCCTTT 67845 32 100.0 36 ................................ TTCAGGAAGAACGAATCCGCCGACATGAACACCGGA 67913 32 100.0 37 ................................ TCGATCAGCGCCGACAGCGAATCCACGGCGGCATCGC 67982 32 100.0 35 ................................ CGTTACACGCGCGTTCCGCCCACCGCTTGACGCTG 68049 32 100.0 35 ................................ TGTAGCACTGCATTAACTAATGCGTACGCCAATTC 68116 32 96.9 37 ..........G..................... GCGGCCGAGGCGGAAGCGGACTGGCAGGACGAAGCGG 68185 32 96.9 33 ..........G..................... TCGGCGAGGGCATCGAAGGTGCGGCCGGAGCGG 68250 32 96.9 36 ..........G..................... ATGGATAAGCAGCGCCGCCTCGCGTTTATTGGCGGC 68318 32 96.9 34 ..........G..................... GGGATCATCGCGGCACCCCATCGGTCTCGATGCC 68384 32 96.9 33 ..........G..................... GACGGAGACGAGATCGTGATCCGGCTGTGGAAG 68449 32 90.6 36 ..........G.......A.......T..... CGGCAGGCCTGTTCGATGGCGCCAATGCTGGGCCGG 68517 32 90.6 34 ..........G.......C.......T..... AGCTCGAACAGGATGTCAGCCTGCGACCGCTGCC 68583 32 96.9 33 ..........G..................... AACTGATAGGAGAGCTGCTGCATCTGCCATCCG 68648 32 93.8 34 ..........G..T.................. ATTTGAAGCGTGCTGCGCAACCACTGGCCGCTCT 68714 32 96.9 36 ..........G..................... TCTGCGCTCGCCAAGATCCAACCCGACACCGACCCT 68782 32 93.8 34 .C........G..................... ACGAAGGTCGCGATGACGCGCCGCATGGGCCGGA 68848 32 84.4 0 .....................G....T..GGT | G [68868] ========== ====== ====== ====== ================================ ===================================== ================== 24 32 97.0 35 GTCGCCTCCCACGCGGAGGCGTGGATCGAAAC # Left flank : GAGGCGCGGGCGCTTGCGGAACGGCTGCGCGCCGACATCGCCCGGACGCCCGTGACGACGGACGGCGGAACGATCCCCGTGACGGTGAGCATCGGCGTCGCCTTCGCGCGCAGCGGCGCCGGCACTTTCGAGGCGGTGCTCAAGCGTGCGGACGACGCGCTCTACGCGGCCAAGGCGGCCGGGCGCGACCGCGTGGCGGTCGACGGCGAAGACCGGCACGCGTTCGGGGCGTGAGGCCGGCCGGTGCACGCTGCCGCGCGTGCTGCACGGTGCCGCCGGTGGGGCGCTCGGGCGGATGCGCCTGTCGGGGCGGCGTCTTCCAGCGCGAACCCCAAGCGCGCCGGATTTCCCCGGCCGGTTCGCGCACGTCTCAAGCGATTGATTTTCCAGGGTGCGAGGCCTCACGCCGCCTTCCGCCGGCCCTCGATGGCCGCTCTGCGCGCGCGGTTCGCGCCGAGAGGCGAATTTCTCCCGCCTTCCCAATCTGCTACGCTGCCGGC # Right flank : TGATGGCGAGGCCGGGGGAGCGGCGTTGTCGTGCTGGCTCACCCGGCCTCGCGGGCGGCGAAGGCGTTGAGCTGACCGTATTGGGGGTTGAGCATGGCGAGGAGCGGCAGGATGGCGGCGCCGCGGGCGACGGCATCGGCGCCGAGATCGGCCTTCATCAGGCGCGGCACCTCGCGTTCGGTGCGGGCGATCGAGGGATAGAGCGGCGGCACCCGCTCGATCAGTGCCTCGATCAGCCATGACGGCGCATCGCCGCCGAACATCACGGTTTCCGGATCGAACAGGTTTTCCAGCGTGTTGAGCCCGATGCGCAGAGGCTCCACCGCCTCCTCGATCCAGGCGGCGACGGCGGGGTGTTCGGGCGAGAAGCGGCTTTCGAACGCGAGCGCATCGCCCGGCGCGATGCCGCGGGCGGCCAGAAAGCGGCTCAGCGAATCCATCGAGACGTAGGTTTCGAGGCAGCCGCGCTTGCCGCAGATGCAGGGCTGGCCGCCCGGCAC # Questionable array : NO Score: 5.80 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCTCCCACGCGGAGGCGTGGATCGAAAC # Alternate repeat : GTCGCCTCCCGCGCGGAGGCGTGGATCGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCCTCCCGCGCGGAGGCGTGGATAGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.70,-10.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-18] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [31.7-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 92945-91847 **** Predicted by CRISPRDetect 2.4 *** >NZ_FRXO01000005.1 Pseudoxanthobacter soli DSM 19599, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 92944 32 100.0 35 ................................ AGCGCCGGGACGGTCGCGGTCGACATCAGCGTCAG 92877 32 93.8 37 ..........A.A................... CAGCGAAGAATCCGGCGACGTCATCGACCTGTTGTCG 92808 32 100.0 34 ................................ GGTGACGCCGCTCGGCAGCTCGTCATCGGCGCGC 92742 32 100.0 35 ................................ GTACTCGTCGCACTCGGACTTGGCGCGGTCAGAAT 92675 32 100.0 36 ................................ TTGGAGACATCCGGCGACAGTGCCTTGGCCAGCAGG 92607 32 100.0 35 ................................ ACGTTCGGCGCTTCGATTGGCGGCGGTCCATCGAA 92540 32 100.0 32 ................................ ACACTCCCGGAGCGCAACCTCCTGCTTTATTC 92476 32 100.0 34 ................................ ATCTTCAAGCAGGCGAAAGGGCAGGGCTTCGACG 92410 32 100.0 35 ................................ ACGGCCCCGGCGGCTATCGCGACGTTTGGGAGGGC 92343 32 100.0 34 ................................ TTACCGTAGAGTACCCAGACAACGACGCCACGTT 92277 32 100.0 36 ................................ GGGGTCGCCAGTGCCAGTTATCCCGCGGATGGGAGC 92209 32 100.0 35 ................................ GCGTCCACGTCGCCGCTTTCGACGAGCGTCGCCTC 92142 32 100.0 36 ................................ CCCCAAAGGCCAAAGCGGCAGCCGTTAGGGGCGATG 92074 32 100.0 33 ................................ AGATGCTGCGACATGAGCCGCCCCAGATCAGCA 92009 32 100.0 33 ................................ CGGCAGCGCGGCGTCGAACTCCGCCCGCGTCAG 91944 32 100.0 34 ................................ GTATTTGGCGCCGGAGGCATATTCGACCGTGGTA 91878 32 96.9 0 ...T............................ | ========== ====== ====== ====== ================================ ===================================== ================== 17 32 99.5 35 GTCGCCCCTCCCGCAGGGGCGTGGATCGAAAC # Left flank : GGAAATAGGCGGCTGCGATGCTCGTGCTGGTCACCTATGATGTACGAACCTCGGAAGGCGATGGCGGCGCCCGCCTGCGCGCGGTTGCGAAAGCATGCCGAGACTATGGGCAGCGTGTGCAGTATTCGGTGTTTGAGATTGAGGTGGATCCGGCCCAGTGGACGCGGCTGAAAGCGCGTCTTGAAGGTCTGATCAGGCCGGAGAGCGACAGTCTGCGCTACTACTACCTCGGCGCGAACGGCCGGAGAAAGATCGAGCACGTCGGCGCCAAGCCGGCAGTGGATCTGGACGGCCCCCTCATTGTCTGAGGGCACACACGCGGTGCGAACCTGAAGCGTGCCGGCGAACCCGGTGAGGTTCGCACCCGTGGCAGACCCTTGCCGGAAAACCTCTTTTGCAACCTTCCTATCCTCAAGACCGCTTTGCGCGGCCAGTTTCCGCGCAGGTTCGCGCCGCACGCCCTCTTTGCTGAACGCGTGCATCGGCTTAGAAGTCAAGCG # Right flank : CACGGGCCATGACAAGTTCTGGTCATGACCGATCGCAAAGCAAATCGTCCTGAGCGACGGGCGAGGAGGCGTTTGACGCATGCCCCCGCCTACATGGTCGCGCCGATCTGCCAGGGCACGAATTCATGGTCGCCATAACCGAGCATTTCGGATTTGGTGCGGCGGCCTGAGGCAACCTCCAGAATCTGCTCGAAGATCTCTCGGCCCTTCTGCTTGATCGACACGCCGTCAAGGATGTCGCCGCAATTGACATCCATATCGTCGACCATCCGCATATACATCGGCGTATTGGTCGCCAGCTTGATCGAGGGCGTCGGCTTTGAGCCGAAGGCGGAACCGCGCCCGGTGGTGAAGGCGAGCACATTGGCGCCTCCGGCGATCTGGCCCGTGGCGGCGACCGGATCGAAGCCGGGCGTATCCATGAACACCAGCCCCTTCCGGGTGATCGGCTCGGCATAACGATAGACGCCGGCCAGCGGAGAACTGCCGCCTTTGGCGAT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCCTCCCGCAGGGGCGTGGATCGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCCCCTCGCGCAGGGGCGTGGATCGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.50,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-2] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [43.3-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 120910-121408 **** Predicted by CRISPRDetect 2.4 *** >NZ_FRXO01000005.1 Pseudoxanthobacter soli DSM 19599, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 120910 36 100.0 30 .................................... GCCCCTTCGCACTCGACGCATCGGCGGGCT 120976 36 100.0 30 .................................... ATCGAGCCATGGTTACAGCGCGGCCATCTC 121042 36 100.0 30 .................................... GTGACGCGGGCAATCGAGACGTTCCGGCTC 121108 36 100.0 30 .................................... CACCGCCATCGAAACCCACCGCCTCAACCA 121174 36 100.0 30 .................................... CGCGAGAAGACGGCCCATATCTGGGAGCGC 121240 36 100.0 30 .................................... CAAACTCTCGTGATGGTAAGCAATCTCCGG 121306 36 100.0 30 .................................... ATCTCGACGGTTGAGCCCGGCGCCGCCGTG 121372 36 83.3 0 A...................C.C........A.CG. | A [121404] ========== ====== ====== ====== ==================================== ============================== ================== 8 36 97.9 30 GGTTTAGCAGTTCAGAAATCGCAGGCCAACCGCAAC # Left flank : GGCGATGGAGTGGGATGCGGCTGGCCGTATCGACGATGGCAACCCGTGATGCGGGGCGAGCCATGATGCGGGGGCGACCCGTGAGCGCGGGCGATGCGGCACACCTGAGCGGGTACCGGCTGATGTGGATCTTCGTGATGTTCGACTTGCCGGTGGGCACGAAGAAGCAGATGCGGGATGCGACGCGGTTTCGCACGTTCCTGCTCGACGACGGCTACGAGATGAGCCAGTTTTCTGTCTATGCGCGCTTCTGCAACGGCCGCGACAGCTTCGAAGCACACTTGAAGCGGATCGAGGCCAATCTACCGGAAAAGGGAGACGTTCATGTGCTCACCTTCACCGACCGGCAGTATGAGGCGATCGTCCGATTCTCCAGCCAGCGGCGCCAGAAGCCCCGCAAGAATCCCGATCAGCTGGCACTGTTCTAGTTATGTCCGGCGGAACCTGCCGACCAGATGCCTCGATTTCCCGTTTGAAAACAAAGGGTTATCGACGCATCT # Right flank : CGCCTCAGCCTGCCTTGCCGCGCCCGGCCGAGGGCCAGGTCGCGAGGACGTGGTCGATGACGGCGATGAGGTCGGCGCGCGTCGCGCCCGCCTTGGCCTGGATGGCCATGCCCTGCGCTACCGTCATGACGAAGCGCGCCAGTGCCGCGCAATCGGCGCCGGAGGCCAGTTCGCCCTCGGCGCGCGCGCGCTCCAGCCGCTCCTTCAGGTCCGCCTCCGCGGCGACGCGGCGCCTGACCAGTTCCTGGCGGATGGATTCGGTCTCGTCCGAGCACGCGAGAGCGCCGTTGATGCCGAGGCAGCCGCGGGCGTGCGCGTGCATGGTCTGCACCTCCGCCGAGCCGACGAGAATGCGCCGGACCACGGCGCGGCTGTCCGGCTCGTCCAGCGCCTCGCGCATGAAGGCCATGTATTTGGCGTCGTAGCGCGCCACCGCGCGGCGAAACAGCGCCTCCTTGTTGCCGAAGGCGGCATAGAGCCCGGGGCGCGCCACGCCGGTG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTTAGCAGTTCAGAAATCGCAGGCCAACCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched ACGCTAGCAGTTCAGAAATCGCAGGCCAACCGCAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.50,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //